CircRNA Information

General Information
circRNA Basic Information
CircID chr19:10252419|10252621
Strand +
CircType exon
Host Gene ENSG00000105364.12;
Algorism CIRI2;
Sequence CCAGGCCTGCACTGGGCGTCGATGAGTGGGTACCGGGAGCTCGACTTTGCGCAGCACGGGCTCCGGGAGACCTGGAGCGATTGCGGGGGTCAGAGGTTAGGGTCAAGGGTCAGACCTCTCTGTCGCCGCCCCTCCTGGAGCCACCCCGGTTGCCTTACCCTCGCTCGCCACCTGCTCCGGGTTCTCGGTCGCACGCGCTGCCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:10252419|10252621 hsa-miR-148a-5p 0 0 1
chr19:10252419|10252621 hsa-miR-148a-3p 0 0 1
chr19:10252419|10252621 hsa-miR-152-5p 0 0 1
chr19:10252419|10252621 hsa-miR-152-3p 0 0 1
chr19:10252419|10252621 hsa-miR-148b-5p 0 0 1
chr19:10252419|10252621 hsa-miR-148b-3p 0 0 1
chr19:10252419|10252621 hsa-miR-504-5p 0 0 1
chr19:10252419|10252621 hsa-miR-504-3p 0 0 1
chr19:10252419|10252621 hsa-miR-506-5p 0 0 1
chr19:10252419|10252621 hsa-miR-506-3p 0 0 1
chr19:10252419|10252621 hsa-miR-555 0 0 1
chr19:10252419|10252621 hsa-miR-589-5p 0 0 1
chr19:10252419|10252621 hsa-miR-589-3p 0 0 1
chr19:10252419|10252621 hsa-miR-608 1 1 1
chr19:10252419|10252621 hsa-miR-665 0 1 1
chr19:10252419|10252621 hsa-miR-1203 0 1 1
chr19:10252419|10252621 hsa-miR-1825 0 0 1
chr19:10252419|10252621 hsa-miR-885-3p 0 1 1
chr19:10252419|10252621 hsa-miR-423-5p 0 1 1
chr19:10252419|10252621 hsa-miR-124 0 0 1
chr19:10252419|10252621 hsa-miR-1273 0 0 1
chr19:10252419|10252621 hsa-miR-663a 1 0 0
chr19:10252419|10252621 hsa-miR-1268a 1 0 0
chr19:10252419|10252621 hsa-miR-1469 1 0 0
chr19:10252419|10252621 hsa-miR-3196 1 0 0
chr19:10252419|10252621 hsa-miR-3665 1 1 0
chr19:10252419|10252621 hsa-miR-3937 1 0 0
chr19:10252419|10252621 hsa-miR-1268b 1 0 0
chr19:10252419|10252621 hsa-miR-4467 0 1 0
chr19:10252419|10252621 hsa-miR-4479 1 0 0
chr19:10252419|10252621 hsa-miR-2392 1 0 0
chr19:10252419|10252621 hsa-miR-3960 1 0 0
chr19:10252419|10252621 hsa-miR-4651 1 0 0
chr19:10252419|10252621 hsa-miR-4663 1 0 0
chr19:10252419|10252621 hsa-miR-4751 1 1 0
chr19:10252419|10252621 hsa-miR-4767 1 0 0
chr19:10252419|10252621 hsa-miR-4780 0 1 0
chr19:10252419|10252621 hsa-miR-5090 1 0 0
chr19:10252419|10252621 hsa-miR-6081 1 1 0
chr19:10252419|10252621 hsa-miR-6090 1 0 0
chr19:10252419|10252621 hsa-miR-8072 1 0 0
chr19:10252419|10252621 hsa-miR-212-5p 0 1 0
chr19:10252419|10252621 hsa-miR-6089 1 0 0
chr19:10252419|10252621 hsa-miR-4655-5p 1 1 0
chr19:10252419|10252621 hsa-miR-6782-5p 1 0 0
chr19:10252419|10252621 hsa-miR-6772-3p 1 0 0
chr19:10252419|10252621 hsa-miR-6784-5p 1 0 0
chr19:10252419|10252621 hsa-miR-4640-5p 1 0 0
chr19:10252419|10252621 hsa-miR-4787-5p 1 0 0
chr19:10252419|10252621 hsa-miR-149-3p 1 0 0
chr19:10252419|10252621 hsa-miR-328-3p 1 0 0
chr19:10252419|10252621 hsa-miR-6859-3p 0 1 0
chr19:10252419|10252621 hsa-miR-4750-3p 1 1 0
chr19:10252419|10252621 hsa-miR-6759-3p 0 1 0
chr19:10252419|10252621 hsa-miR-10400-5p 1 1 0
chr19:10252419|10252621 hsa-miR-4763-3p 1 0 0
chr19:10252419|10252621 hsa-miR-6812-5p 1 0 0
chr19:10252419|10252621 hsa-miR-6816-5p 1 1 0
chr19:10252419|10252621 hsa-miR-6865-5p 1 1 0
chr19:10252419|10252621 hsa-miR-6775-5p 1 1 0
chr19:10252419|10252621 hsa-miR-1343-5p 1 0 0
chr19:10252419|10252621 hsa-miR-6743-5p 1 0 0
chr19:10252419|10252621 hsa-miR-6756-5p 1 0 0
chr19:10252419|10252621 hsa-miR-6803-5p 1 0 0
chr19:10252419|10252621 hsa-miR-6815-5p 1 1 0
chr19:10252419|10252621 hsa-miR-6722-3p 1 0 0
chr19:10252419|10252621 hsa-miR-6797-5p 1 0 0
chr19:10252419|10252621 hsa-miR-6879-5p 1 0 0
chr19:10252419|10252621 hsa-miR-4728-5p 1 0 0
chr19:10252419|10252621 hsa-miR-4649-5p 1 0 0
chr19:10252419|10252621 hsa-miR-6729-5p 1 0 0
chr19:10252419|10252621 hsa-miR-6795-5p 1 0 0
chr19:10252419|10252621 hsa-miR-6858-5p 1 0 0
chr19:10252419|10252621 hsa-miR-6883-5p 1 0 0
chr19:10252419|10252621 hsa-miR-6887-5p 1 0 0
chr19:10252419|10252621 hsa-miR-1914-3p 1 0 0
chr19:10252419|10252621 hsa-miR-10398-3p 1 1 0
chr19:10252419|10252621 hsa-miR-6785-5p 1 0 0
chr19:10252419|10252621 hsa-miR-3184-5p 0 1 0
chr19:10252419|10252621 hsa-miR-11181-5p 1 1 0
chr19:10252419|10252621 hsa-miR-3130-5p 1 0 0
chr19:10252419|10252621 hsa-miR-10397-5p 0 1 0
chr19:10252419|10252621 hsa-miR-6811-5p 0 1 0
chr19:10252419|10252621 hsa-miR-301a-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:10252419|10252621
ORF Type ORF1
Protein Length 65
Nucleotide Length 195
Protein Sequence MHWASMSGYRELDFAQHGLRETWSDCGGQRLGSRVRPLCRRPSWSHPGCLTLARHLLRVLGRTRC
Nucleotide Sequence CTGCACTGGGCGTCGATGAGTGGGTACCGGGAGCTCGACTTTGCGCAGCACGGGCTCCGGGAGACCTGGAGCGATTGCGGGGGTCAGAGGTTAGGGTCAAGGGTCAGACCTCTCTGTCGCCGCCCCTCCTGGAGCCACCCCGGTTGCCTTACCCTCGCTCGCCACCTGCTCCGGGTTCTCGGTCGCACGCGCTGC
CircID chr19:10252419|10252621
ORF Type ORF2
Protein Length 64
Nucleotide Length 192
Protein Sequence MGVDEWVPGARLCAARAPGDLERLRGSEVRVKGQTSLSPPLLEPPRLPYPRSPPAPGSRSHALP
Nucleotide Sequence CTGGGCGTCGATGAGTGGGTACCGGGAGCTCGACTTTGCGCAGCACGGGCTCCGGGAGACCTGGAGCGATTGCGGGGGTCAGAGGTTAGGGTCAAGGGTCAGACCTCTCTGTCGCCGCCCCTCCTGGAGCCACCCCGGTTGCCTTACCCTCGCTCGCCACCTGCTCCGGGTTCTCGGTCGCACGCGCTGCCT
CircID chr19:10252419|10252621
ORF Type ORF3
Protein Length 35
Nucleotide Length 105
Protein Sequence MTLTSDPRNRSRSPGARAAQSRAPGTHSSTPSAGL
Nucleotide Sequence TTGACCCTAACCTCTGACCCCCGCAATCGCTCCAGGTCTCCCGGAGCCCGTGCTGCGCAAAGTCGAGCTCCCGGTACCCACTCATCGACGCCCAGTGCAGGCCTG
CircID chr19:10252419|10252621
ORF Type ORF4
Protein Length 31
Nucleotide Length 93
Protein Sequence MTPAIAPGLPEPVLRKVELPVPTHRRPVQAW
Nucleotide Sequence CTGACCCCCGCAATCGCTCCAGGTCTCCCGGAGCCCGTGCTGCGCAAAGTCGAGCTCCCGGTACCCACTCATCGACGCCCAGTGCAGGCCTGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab