CircRNA Information

General Information
circRNA Basic Information
CircID chr19:10350841|10351089
Strand -
CircType exon
Host Gene ENSG00000105397.12;
Algorism CIRI2;
Sequence ACGCTGAACACTGAAGGGGCCTGGCCTTGGTACTTCTCATGGACTGTCTTCAGAATGGGTATGAGGTTCTCGAAGGTTGGGCGAAAGGACGCCTCTGTCTCCCAGCAGTTCTTCATGAGATGATAGACCTAGAAGGAAAAACCAGGGCTGGTGGGGGCTGCCCTCTCCACAGCAGGATAGTGGGGTCAGGGAAAGACAAAGGAAGTCTCACCTCACAGGGACATTTGTCGGGCCGTGGCAGCCTCTCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:10350841|10351089 hsa-miR-185-5p 0 0 1
chr19:10350841|10351089 hsa-miR-185-3p 0 0 1
chr19:10350841|10351089 hsa-miR-370-5p 0 0 1
chr19:10350841|10351089 hsa-miR-370-3p 0 0 1
chr19:10350841|10351089 hsa-miR-511-5p 0 0 1
chr19:10350841|10351089 hsa-miR-511-3p 0 0 1
chr19:10350841|10351089 hsa-miR-589-5p 0 0 1
chr19:10350841|10351089 hsa-miR-589-3p 0 0 1
chr19:10350841|10351089 hsa-miR-617 0 0 1
chr19:10350841|10351089 hsa-miR-660-5p 0 0 1
chr19:10350841|10351089 hsa-miR-660-3p 0 0 1
chr19:10350841|10351089 hsa-miR-1226-5p 0 0 1
chr19:10350841|10351089 hsa-miR-1226-3p 0 0 1
chr19:10350841|10351089 hsa-miR-1237-5p 0 0 1
chr19:10350841|10351089 hsa-miR-1237-3p 0 0 1
chr19:10350841|10351089 hsa-miR-1294 0 0 1
chr19:10350841|10351089 hsa-miR-1248 0 0 1
chr19:10350841|10351089 hsa-miR-1253 0 0 1
chr19:10350841|10351089 hsa-miR-485-5p 0 0 1
chr19:10350841|10351089 hsa-miR-339-5p 0 0 1
chr19:10350841|10351089 hsa-miR-125a-5p 0 0 1
chr19:10350841|10351089 hsa-miR-455-3p 0 0 1
chr19:10350841|10351089 hsa-miR-1274a 0 0 1
chr19:10350841|10351089 hsa-miR-125b 0 0 1
chr19:10350841|10351089 hsa-miR-1274b 0 0 1
chr19:10350841|10351089 hsa-miR-1300 0 0 1
chr19:10350841|10351089 hsa-miR-923 0 0 1
chr19:10350841|10351089 hsa-miR-4301 0 1 0
chr19:10350841|10351089 hsa-miR-4255 0 1 0
chr19:10350841|10351089 hsa-miR-3943 0 1 0
chr19:10350841|10351089 hsa-miR-4511 0 1 0
chr19:10350841|10351089 hsa-miR-8060 0 1 0
chr19:10350841|10351089 hsa-miR-6720-5p 1 0 0
chr19:10350841|10351089 hsa-miR-6854-5p 1 0 0
chr19:10350841|10351089 hsa-miR-7114-5p 0 1 0
chr19:10350841|10351089 hsa-miR-6746-5p 0 1 0
chr19:10350841|10351089 hsa-miR-3189-5p 1 0 0
chr19:10350841|10351089 hsa-miR-6742-5p 1 0 0
chr19:10350841|10351089 hsa-miR-6868-3p 0 1 0
chr19:10350841|10351089 hsa-miR-6763-3p 1 0 0
chr19:10350841|10351089 hsa-miR-30c-2-3p 0 1 0
chr19:10350841|10351089 hsa-miR-6830-3p 0 1 0
chr19:10350841|10351089 hsa-miR-425-3p 0 1 0
chr19:10350841|10351089 hsa-miR-4446-5p 0 1 0
chr19:10350841|10351089 hsa-miR-378a-5p 1 0 0
chr19:10350841|10351089 hsa-miR-146b-3p 0 1 0
chr19:10350841|10351089 hsa-miR-3922-5p 0 1 0
chr19:10350841|10351089 hsa-miR-4732-3p 0 1 0
chr19:10350841|10351089 hsa-miR-4758-3p 1 0 0
chr19:10350841|10351089 hsa-miR-605-3p 0 1 0
chr19:10350841|10351089 hsa-miR-6777-3p 1 0 0
chr19:10350841|10351089 hsa-miR-130b-5p 0 1 0
chr19:10350841|10351089 hsa-miR-4750-3p 1 0 0
chr19:10350841|10351089 hsa-miR-5585-5p 0 1 0
chr19:10350841|10351089 hsa-miR-6788-5p 0 1 0
chr19:10350841|10351089 hsa-miR-30c-1-3p 0 1 0
chr19:10350841|10351089 hsa-miR-7843-5p 0 1 0
chr19:10350841|10351089 hsa-miR-6864-3p 0 1 0
chr19:10350841|10351089 hsa-miR-6764-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:10350841|10351089
ORF Type ORF1
Protein Length 39
Nucleotide Length 120
Protein Sequence MNTEGAWPWYFSWTVFRMGMRFSKVGRKDASVSQQFFMR
Nucleotide Sequence CTGAACACTGAAGGGGCCTGGCCTTGGTACTTCTCATGGACTGTCTTCAGAATGGGTATGAGGTTCTCGAAGGTTGGGCGAAAGGACGCCTCTGTCTCCCAGCAGTTCTTCATGAGATGA
CircID chr19:10350841|10351089
ORF Type ORF2
Protein Length 30
Nucleotide Length 90
Protein Sequence MPSPQQDSGVRERQRKSHLTGTFVGPWQPL
Nucleotide Sequence CTGCCCTCTCCACAGCAGGATAGTGGGGTCAGGGAAAGACAAAGGAAGTCTCACCTCACAGGGACATTTGTCGGGCCGTGGCAGCCTCTC
CircID chr19:10350841|10351089
ORF Type ORF3
Protein Length 76
Nucleotide Length 228
Protein Sequence MALVLLMDCLQNGYEVLEGWAKGRLCLPAVLHEMIDLEGKTRAGGGCPLHSRIVGSGKDKGSLTSQGHLSGRGSLS
Nucleotide Sequence CTGGCCTTGGTACTTCTCATGGACTGTCTTCAGAATGGGTATGAGGTTCTCGAAGGTTGGGCGAAAGGACGCCTCTGTCTCCCAGCAGTTCTTCATGAGATGATAGACCTAGAAGGAAAAACCAGGGCTGGTGGGGGCTGCCCTCTCCACAGCAGGATAGTGGGGTCAGGGAAAGACAAAGGAAGTCTCACCTCACAGGGACATTTGTCGGGCCGTGGCAGCCTCTCC
CircID chr19:10350841|10351089
ORF Type ORF4
Protein Length 50
Nucleotide Length 153
Protein Sequence MTPLSCCGEGSPHQPWFFLLGLSSHEELLGDRGVLSPNLREPHTHSEDSP
Nucleotide Sequence CTGACCCCACTATCCTGCTGTGGAGAGGGCAGCCCCCACCAGCCCTGGTTTTTCCTTCTAGGTCTATCATCTCATGAAGAACTGCTGGGAGACAGAGGCGTCCTTTCGCCCAACCTTCGAGAACCTCATACCCATTCTGAAGACAGTCCATGA
CircID chr19:10350841|10351089
ORF Type ORF5
Protein Length 38
Nucleotide Length 114
Protein Sequence MKNCWETEASFRPTFENLIPILKTVHEKYQGQAPSVFS
Nucleotide Sequence ATGAAGAACTGCTGGGAGACAGAGGCGTCCTTTCGCCCAACCTTCGAGAACCTCATACCCATTCTGAAGACAGTCCATGAGAAGTACCAAGGCCAGGCCCCTTCAGTGTTCAGC
CircID chr19:10350841|10351089
ORF Type ORF6
Protein Length 42
Nucleotide Length 129
Protein Sequence MPRPDKCPCEVRLPLSFPDPTILLWRGQPPPALVFPSRSIIS
Nucleotide Sequence CTGCCACGGCCCGACAAATGTCCCTGTGAGGTGAGACTTCCTTTGTCTTTCCCTGACCCCACTATCCTGCTGTGGAGAGGGCAGCCCCCACCAGCCCTGGTTTTTCCTTCTAGGTCTATCATCTCATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab