CircRNA Information

General Information
circRNA Basic Information
CircID chr19:1035830|1035977
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence TCCACACACTCCACACACCCATCATACAGCTGTTTCAGTTTTTTATTTTTATTTTTGAGATGGAGTCTGGCTCTGTCACCCAGGCTGGAGTGCAGTGGTGTGATCTCCGCTCACTGCAACCCCCTCCTCCCAGGTTCAAGCAATTCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:1035830|1035977 hsa-miR-122-5p 0 0 1
chr19:1035830|1035977 hsa-miR-122-3p 0 0 1
chr19:1035830|1035977 hsa-miR-494-5p 0 0 1
chr19:1035830|1035977 hsa-miR-494-3p 0 0 1
chr19:1035830|1035977 hsa-miR-609 0 0 1
chr19:1035830|1035977 hsa-miR-661 0 1 1
chr19:1035830|1035977 hsa-miR-766-5p 0 0 1
chr19:1035830|1035977 hsa-miR-766-3p 0 0 1
chr19:1035830|1035977 hsa-miR-765 0 1 1
chr19:1035830|1035977 hsa-miR-1228-5p 0 0 1
chr19:1035830|1035977 hsa-miR-1228-3p 0 0 1
chr19:1035830|1035977 hsa-miR-548e-5p 0 0 1
chr19:1035830|1035977 hsa-miR-548e-3p 0 0 1
chr19:1035830|1035977 hsa-miR-1262 0 0 1
chr19:1035830|1035977 hsa-miR-1272 0 0 1
chr19:1035830|1035977 hsa-miR-302f 0 0 1
chr19:1035830|1035977 hsa-miR-1322 0 0 1
chr19:1035830|1035977 hsa-miR-574-5p 0 0 1
chr19:1035830|1035977 hsa-miR-490-3p 0 1 1
chr19:1035830|1035977 hsa-miR-508-5p 0 1 1
chr19:1035830|1035977 hsa-miR-548a-3p 0 0 1
chr19:1035830|1035977 hsa-miR-542-3p 0 0 1
chr19:1035830|1035977 hsa-miR-548c-3p 0 0 1
chr19:1035830|1035977 hsa-miR-371-5p 0 0 1
chr19:1035830|1035977 hsa-miR-644 0 0 1
chr19:1035830|1035977 hsa-miR-548f 0 0 1
chr19:1035830|1035977 hsa-miR-220a 0 0 1
chr19:1035830|1035977 hsa-miR-147 0 0 1
chr19:1035830|1035977 hsa-miR-3149 0 1 0
chr19:1035830|1035977 hsa-miR-4455 0 1 0
chr19:1035830|1035977 hsa-miR-4683 0 1 0
chr19:1035830|1035977 hsa-miR-4739 1 0 0
chr19:1035830|1035977 hsa-miR-5684 0 1 0
chr19:1035830|1035977 hsa-miR-7703 0 1 0
chr19:1035830|1035977 hsa-miR-7106-5p 0 1 0
chr19:1035830|1035977 hsa-miR-6720-5p 0 1 0
chr19:1035830|1035977 hsa-miR-7851-3p 0 1 0
chr19:1035830|1035977 hsa-miR-3192-5p 0 1 0
chr19:1035830|1035977 hsa-miR-6849-3p 0 1 0
chr19:1035830|1035977 hsa-miR-6732-5p 0 1 0
chr19:1035830|1035977 hsa-miR-4793-3p 0 1 0
chr19:1035830|1035977 hsa-miR-30b-3p 0 1 0
chr19:1035830|1035977 hsa-miR-7109-5p 1 0 0
chr19:1035830|1035977 hsa-miR-4738-3p 0 1 0
chr19:1035830|1035977 hsa-miR-4695-3p 0 1 0
chr19:1035830|1035977 hsa-miR-1229-3p 0 1 0
chr19:1035830|1035977 hsa-miR-1273h-5p 0 1 0
chr19:1035830|1035977 hsa-miR-11181-3p 0 1 0
chr19:1035830|1035977 hsa-miR-6779-5p 0 1 0
chr19:1035830|1035977 hsa-miR-4728-5p 1 0 0
chr19:1035830|1035977 hsa-miR-6858-5p 0 1 0
chr19:1035830|1035977 hsa-miR-370-5p 0 1 0
chr19:1035830|1035977 hsa-miR-6807-3p 0 1 0
chr19:1035830|1035977 hsa-miR-4781-5p 0 1 0
chr19:1035830|1035977 hsa-miR-367-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:1035830|1035977
ORF Type ORF1
Protein Length 31
Nucleotide Length 93
Protein Sequence MRWSLALSPRLECSGVISAHCNPLLPGSSNS
Nucleotide Sequence TTGAGATGGAGTCTGGCTCTGTCACCCAGGCTGGAGTGCAGTGGTGTGATCTCCGCTCACTGCAACCCCCTCCTCCCAGGTTCAAGCAATTCT
CircID chr19:1035830|1035977
ORF Type ORF2
Protein Length 39
Nucleotide Length 117
Protein Sequence MFQFFIFIFEMESGSVTQAGVQWCDLRSLQPPPPRFKQF
Nucleotide Sequence CTGTTTCAGTTTTTTATTTTTATTTTTGAGATGGAGTCTGGCTCTGTCACCCAGGCTGGAGTGCAGTGGTGTGATCTCCGCTCACTGCAACCCCCTCCTCCCAGGTTCAAGCAATTC
CircID chr19:1035830|1035977
ORF Type ORF3
Protein Length 34
Nucleotide Length 105
Protein Sequence MNLGGGGCSERRSHHCTPAWVTEPDSISKIKIKN
Nucleotide Sequence TTGAACCTGGGAGGAGGGGGTTGCAGTGAGCGGAGATCACACCACTGCACTCCAGCCTGGGTGACAGAGCCAGACTCCATCTCAAAAATAAAAATAAAAAACTGA
CircID chr19:1035830|1035977
ORF Type ORF4
Protein Length 31
Nucleotide Length 93
Protein Sequence MHSSLGDRARLHLKNKNKKLKQLYDGCVECV
Nucleotide Sequence CTGCACTCCAGCCTGGGTGACAGAGCCAGACTCCATCTCAAAAATAAAAATAAAAAACTGAAACAGCTGTATGATGGGTGTGTGGAGTGTGTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab