CircRNA Information

General Information
circRNA Basic Information
CircID chr19:1037902|1038134
Strand +
CircType exon
Host Gene ENSG00000064666.13;
Algorism CIRI2;
Sequence ACGTATTGGGATATGGCCTTGACCCCTTCCCCCACAGCCCAGTGGCTCAGCCTTGCGAAGGATCAAGGCAAAGGGGAAAAAAGCTCTGCTGCCTGATCCCACGCTGACACTCACAGACCCTTGGTTGACTGGCAGCACTGAACGGGTTAAGAAAAAAAAAAAAAAGATGAAAACACAGAAAAACCCAAAAACCCAGATGGGCAGACGATGTGGGGAGAGAGCGTGCTGGGAGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:1037902|1038134 hsa-miR-148a-5p 0 0 1
chr19:1037902|1038134 hsa-miR-148a-3p 0 0 1
chr19:1037902|1038134 hsa-miR-152-5p 0 0 1
chr19:1037902|1038134 hsa-miR-152-3p 0 0 1
chr19:1037902|1038134 hsa-miR-148b-5p 0 0 1
chr19:1037902|1038134 hsa-miR-148b-3p 0 0 1
chr19:1037902|1038134 hsa-miR-346 0 0 1
chr19:1037902|1038134 hsa-miR-625-5p 0 0 1
chr19:1037902|1038134 hsa-miR-625-3p 0 0 1
chr19:1037902|1038134 hsa-miR-629-5p 0 0 1
chr19:1037902|1038134 hsa-miR-629-3p 0 0 1
chr19:1037902|1038134 hsa-miR-638 1 0 1
chr19:1037902|1038134 hsa-miR-640 0 0 1
chr19:1037902|1038134 hsa-miR-922 0 0 1
chr19:1037902|1038134 hsa-miR-1182 0 0 1
chr19:1037902|1038134 hsa-miR-1275 0 0 1
chr19:1037902|1038134 hsa-miR-512-3p 1 0 1
chr19:1037902|1038134 hsa-miR-491-5p 0 0 1
chr19:1037902|1038134 hsa-miR-574-5p 0 0 1
chr19:1037902|1038134 hsa-miR-324-3p 0 0 1
chr19:1037902|1038134 hsa-miR-769-3p 1 0 1
chr19:1037902|1038134 hsa-miR-450b-3p 0 0 1
chr19:1037902|1038134 hsa-miR-762 1 0 0
chr19:1037902|1038134 hsa-miR-1539 1 0 0
chr19:1037902|1038134 hsa-miR-3714 1 0 0
chr19:1037902|1038134 hsa-miR-1587 1 0 0
chr19:1037902|1038134 hsa-miR-4656 1 0 0
chr19:1037902|1038134 hsa-miR-4741 1 0 0
chr19:1037902|1038134 hsa-miR-5572 1 0 0
chr19:1037902|1038134 hsa-miR-5787 1 0 0
chr19:1037902|1038134 hsa-miR-22-3p 1 0 0
chr19:1037902|1038134 hsa-miR-4687-3p 1 0 0
chr19:1037902|1038134 hsa-miR-1227-5p 1 0 0
chr19:1037902|1038134 hsa-miR-7160-5p 1 0 0
chr19:1037902|1038134 hsa-miR-770-5p 1 0 0
chr19:1037902|1038134 hsa-miR-3151-5p 1 0 0
chr19:1037902|1038134 hsa-miR-1292-5p 1 0 0
chr19:1037902|1038134 hsa-miR-6796-5p 1 0 0
chr19:1037902|1038134 hsa-miR-6829-5p 1 0 0
chr19:1037902|1038134 hsa-miR-3194-5p 1 0 0
chr19:1037902|1038134 hsa-miR-6810-5p 1 0 0
chr19:1037902|1038134 hsa-miR-6786-5p 1 0 0
chr19:1037902|1038134 hsa-miR-6753-5p 1 0 0
chr19:1037902|1038134 hsa-miR-7113-3p 1 0 0
chr19:1037902|1038134 hsa-miR-6823-5p 1 0 0
chr19:1037902|1038134 hsa-miR-5571-3p 1 0 0
chr19:1037902|1038134 hsa-miR-1229-3p 1 0 0
chr19:1037902|1038134 hsa-miR-4738-5p 1 0 0
chr19:1037902|1038134 hsa-miR-6870-5p 1 0 0
chr19:1037902|1038134 hsa-miR-6803-5p 1 0 0
chr19:1037902|1038134 hsa-miR-10401-5p 1 0 0
chr19:1037902|1038134 hsa-miR-6722-3p 1 0 0
chr19:1037902|1038134 hsa-miR-7111-5p 1 0 0
chr19:1037902|1038134 hsa-miR-3620-5p 1 0 0
chr19:1037902|1038134 hsa-miR-4649-5p 1 0 0
chr19:1037902|1038134 hsa-miR-4685-5p 1 0 0
chr19:1037902|1038134 hsa-miR-6795-5p 1 0 0
chr19:1037902|1038134 hsa-miR-6845-5p 1 0 0
chr19:1037902|1038134 hsa-miR-4716-3p 1 0 0
chr19:1037902|1038134 hsa-miR-6764-5p 1 0 0
chr19:1037902|1038134 hsa-miR-7156-5p 1 0 0
chr19:1037902|1038134 hsa-miR-4712-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:1037902|1038134
ORF Type ORF1
Protein Length 27
Nucleotide Length 84
Protein Sequence MALTPSPTAQWLSLAKDQGKGEKSSAA
Nucleotide Sequence ATGGCCTTGACCCCTTCCCCCACAGCCCAGTGGCTCAGCCTTGCGAAGGATCAAGGCAAAGGGGAAAAAAGCTCTGCTGCCTGA
CircID chr19:1037902|1038134
ORF Type ORF2
Protein Length 60
Nucleotide Length 180
Protein Sequence MRRIKAKGKKALLPDPTLTLTDPWLTGSTERVKKKKKKMKTQKNPKTQMGRRCGERACWE
Nucleotide Sequence TTGCGAAGGATCAAGGCAAAGGGGAAAAAAGCTCTGCTGCCTGATCCCACGCTGACACTCACAGACCCTTGGTTGACTGGCAGCACTGAACGGGTTAAGAAAAAAAAAAAAAAGATGAAAACACAGAAAAACCCAAAAACCCAGATGGGCAGACGATGTGGGGAGAGAGCGTGCTGGGAG
CircID chr19:1037902|1038134
ORF Type ORF3
Protein Length 33
Nucleotide Length 102
Protein Sequence MGYGLDPFPHSPVAQPCEGSRQRGKKLCCLIPR
Nucleotide Sequence TTGGGATATGGCCTTGACCCCTTCCCCCACAGCCCAGTGGCTCAGCCTTGCGAAGGATCAAGGCAAAGGGGAAAAAAGCTCTGCTGCCTGATCCCACGCTGA
CircID chr19:1037902|1038134
ORF Type ORF4
Protein Length 49
Nucleotide Length 150
Protein Sequence MGFWVFLCFHLFFFFLNPFSAASQPRVCECQRGIRQQSFFPLCLDPSQG
Nucleotide Sequence CTGGGTTTTTGGGTTTTTCTGTGTTTTCATCTTTTTTTTTTTTTTCTTAACCCGTTCAGTGCTGCCAGTCAACCAAGGGTCTGTGAGTGTCAGCGTGGGATCAGGCAGCAGAGCTTTTTTCCCCTTTGCCTTGATCCTTCGCAAGGCTGA
CircID chr19:1037902|1038134
ORF Type ORF5
Protein Length 68
Nucleotide Length 204
Protein Sequence MPIWVFGFFCVFIFFFFFLTRSVLPVNQGSVSVSVGSGSRAFFPFALILRKAEPLGCGGRGQGHIPIR
Nucleotide Sequence CTGCCCATCTGGGTTTTTGGGTTTTTCTGTGTTTTCATCTTTTTTTTTTTTTTCTTAACCCGTTCAGTGCTGCCAGTCAACCAAGGGTCTGTGAGTGTCAGCGTGGGATCAGGCAGCAGAGCTTTTTTCCCCTTTGCCTTGATCCTTCGCAAGGCTGAGCCACTGGGCTGTGGGGGAAGGGGTCAAGGCCATATCCCAATACGT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab