CircRNA Information

General Information
circRNA Basic Information
CircID chr19:10395237|10395495
Strand -
CircType exon
Host Gene ENSG00000105401.5;
Algorism CIRI2;
Sequence CTCTAGGTCAATGCACCAAATGACCAGGTAATTGGCTGTCTCCTCGCACACCAGGTGGACGTTGTCTGACAGGTACTTTTGGCTGTCATCCCAGCGGCGAAGCATGCCTGTGGGAAGATGCTGGCAAGGTGCTGGAGGGCCCTGGAGGCAAAGGGCCTGCCTCGACCTTGCCCCCCATAACCCACAAGCCCCACTCACCAAAGTGCTTGATCTGTTTCTCGTATTTTTCCACGAAGGTCTTGTGTTTCTGCTCCCTCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:10395237|10395495 hsa-miR-33a-5p 0 0 1
chr19:10395237|10395495 hsa-miR-33a-3p 0 0 1
chr19:10395237|10395495 hsa-miR-192-5p 0 0 1
chr19:10395237|10395495 hsa-miR-192-3p 0 0 1
chr19:10395237|10395495 hsa-miR-215-5p 0 0 1
chr19:10395237|10395495 hsa-miR-215-3p 0 0 1
chr19:10395237|10395495 hsa-miR-579-5p 0 0 1
chr19:10395237|10395495 hsa-miR-579-3p 0 0 1
chr19:10395237|10395495 hsa-miR-619-5p 0 0 1
chr19:10395237|10395495 hsa-miR-619-3p 0 0 1
chr19:10395237|10395495 hsa-miR-33b-5p 0 0 1
chr19:10395237|10395495 hsa-miR-33b-3p 0 0 1
chr19:10395237|10395495 hsa-miR-766-5p 0 0 1
chr19:10395237|10395495 hsa-miR-766-3p 0 0 1
chr19:10395237|10395495 hsa-miR-940 0 1 1
chr19:10395237|10395495 hsa-miR-1202 0 0 1
chr19:10395237|10395495 hsa-miR-548k 0 1 1
chr19:10395237|10395495 hsa-miR-548n 0 1 1
chr19:10395237|10395495 hsa-miR-1324 0 0 1
chr19:10395237|10395495 hsa-miR-1827 0 0 1
chr19:10395237|10395495 hsa-miR-188-3p 0 1 1
chr19:10395237|10395495 hsa-miR-338-3p 0 0 1
chr19:10395237|10395495 hsa-miR-151-5p 0 0 1
chr19:10395237|10395495 hsa-miR-1260 0 0 1
chr19:10395237|10395495 hsa-miR-9 0 0 1
chr19:10395237|10395495 hsa-miR-3166 0 1 0
chr19:10395237|10395495 hsa-miR-4468 0 1 0
chr19:10395237|10395495 hsa-miR-4481 1 1 0
chr19:10395237|10395495 hsa-miR-4507 1 0 0
chr19:10395237|10395495 hsa-miR-4510 0 1 0
chr19:10395237|10395495 hsa-miR-3972 0 1 0
chr19:10395237|10395495 hsa-miR-4651 1 0 0
chr19:10395237|10395495 hsa-miR-4689 1 0 0
chr19:10395237|10395495 hsa-miR-4737 0 1 0
chr19:10395237|10395495 hsa-miR-4739 1 0 0
chr19:10395237|10395495 hsa-miR-5682 0 1 0
chr19:10395237|10395495 hsa-miR-5787 1 0 0
chr19:10395237|10395495 hsa-miR-6081 0 1 0
chr19:10395237|10395495 hsa-miR-6130 0 1 0
chr19:10395237|10395495 hsa-miR-8077 1 0 0
chr19:10395237|10395495 hsa-miR-12115 1 0 0
chr19:10395237|10395495 hsa-miR-12120 0 1 0
chr19:10395237|10395495 hsa-miR-370-3p 1 0 0
chr19:10395237|10395495 hsa-miR-6836-3p 0 1 0
chr19:10395237|10395495 hsa-miR-6728-5p 0 1 0
chr19:10395237|10395495 hsa-miR-5187-5p 0 1 0
chr19:10395237|10395495 hsa-miR-6744-5p 0 1 0
chr19:10395237|10395495 hsa-miR-6793-5p 0 1 0
chr19:10395237|10395495 hsa-miR-3150b-3p 0 1 0
chr19:10395237|10395495 hsa-miR-6786-5p 1 0 0
chr19:10395237|10395495 hsa-miR-1226-5p 1 0 0
chr19:10395237|10395495 hsa-miR-1229-5p 1 0 0
chr19:10395237|10395495 hsa-miR-6834-5p 0 1 0
chr19:10395237|10395495 hsa-miR-3648 1 0 0
chr19:10395237|10395495 hsa-miR-6802-5p 1 0 0
chr19:10395237|10395495 hsa-miR-6513-5p 0 1 0
chr19:10395237|10395495 hsa-miR-1296-3p 0 1 0
chr19:10395237|10395495 hsa-miR-6851-3p 0 1 0
chr19:10395237|10395495 hsa-miR-4738-5p 0 1 0
chr19:10395237|10395495 hsa-miR-6769b-5p 1 0 0
chr19:10395237|10395495 hsa-miR-6778-5p 1 0 0
chr19:10395237|10395495 hsa-miR-6775-5p 0 1 0
chr19:10395237|10395495 hsa-miR-6756-5p 1 1 0
chr19:10395237|10395495 hsa-miR-6769a-5p 1 0 0
chr19:10395237|10395495 hsa-miR-7107-5p 1 0 0
chr19:10395237|10395495 hsa-miR-1249-5p 1 0 0
chr19:10395237|10395495 hsa-miR-6779-5p 1 0 0
chr19:10395237|10395495 hsa-miR-7111-5p 1 0 0
chr19:10395237|10395495 hsa-miR-4728-5p 1 0 0
chr19:10395237|10395495 hsa-miR-1237-5p 0 1 0
chr19:10395237|10395495 hsa-miR-328-5p 1 1 0
chr19:10395237|10395495 hsa-miR-4745-5p 1 1 0
chr19:10395237|10395495 hsa-miR-6777-5p 1 0 0
chr19:10395237|10395495 hsa-miR-4723-5p 1 0 0
chr19:10395237|10395495 hsa-miR-6885-5p 0 1 0
chr19:10395237|10395495 hsa-miR-4758-5p 1 1 0
chr19:10395237|10395495 hsa-miR-3940-5p 1 0 0
chr19:10395237|10395495 hsa-miR-4665-5p 1 0 0
chr19:10395237|10395495 hsa-miR-6790-5p 1 0 0
chr19:10395237|10395495 hsa-miR-151a-5p 0 1 0
chr19:10395237|10395495 hsa-miR-6506-5p 0 1 0
chr19:10395237|10395495 hsa-miR-3121-5p 0 1 0
chr19:10395237|10395495 hsa-miR-548av-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:10395237|10395495
ORF Type ORF1
Protein Length 33
Nucleotide Length 102
Protein Sequence MAVIPAAKHACGKMLARCWRALEAKGLPRPCPP
Nucleotide Sequence TTGGCTGTCATCCCAGCGGCGAAGCATGCCTGTGGGAAGATGCTGGCAAGGTGCTGGAGGGCCCTGGAGGCAAAGGGCCTGCCTCGACCTTGCCCCCCATAA
CircID chr19:10395237|10395495
ORF Type ORF2
Protein Length 76
Nucleotide Length 228
Protein Sequence MAVSSHTRWTLSDRYFWLSSQRRSMPVGRCWQGAGGPWRQRACLDLAPHNPQAPLTKVLDLFLVFFHEGLVFLLPH
Nucleotide Sequence TTGGCTGTCTCCTCGCACACCAGGTGGACGTTGTCTGACAGGTACTTTTGGCTGTCATCCCAGCGGCGAAGCATGCCTGTGGGAAGATGCTGGCAAGGTGCTGGAGGGCCCTGGAGGCAAAGGGCCTGCCTCGACCTTGCCCCCCATAACCCACAAGCCCCACTCACCAAAGTGCTTGATCTGTTTCTCGTATTTTTCCACGAAGGTCTTGTGTTTCTGCTCCCTCAC
CircID chr19:10395237|10395495
ORF Type ORF3
Protein Length 74
Nucleotide Length 222
Protein Sequence MSPRTPGGRCLTGTFGCHPSGEACLWEDAGKVLEGPGGKGPASTLPPITHKPHSPKCLICFSYFSTKVLCFCSL
Nucleotide Sequence CTGTCTCCTCGCACACCAGGTGGACGTTGTCTGACAGGTACTTTTGGCTGTCATCCCAGCGGCGAAGCATGCCTGTGGGAAGATGCTGGCAAGGTGCTGGAGGGCCCTGGAGGCAAAGGGCCTGCCTCGACCTTGCCCCCCATAACCCACAAGCCCCACTCACCAAAGTGCTTGATCTGTTTCTCGTATTTTTCCACGAAGGTCTTGTGTTTCTGCTCCCTC
CircID chr19:10395237|10395495
ORF Type ORF4
Protein Length 33
Nucleotide Length 102
Protein Sequence MWVMGGKVEAGPLPPGPSSTLPASSHRHASPLG
Nucleotide Sequence TTGTGGGTTATGGGGGGCAAGGTCGAGGCAGGCCCTTTGCCTCCAGGGCCCTCCAGCACCTTGCCAGCATCTTCCCACAGGCATGCTTCGCCGCTGGGATGA
CircID chr19:10395237|10395495
ORF Type ORF5
Protein Length 67
Nucleotide Length 201
Protein Sequence MVSGACGLWGARSRQALCLQGPPAPCQHLPTGMLRRWDDSQKYLSDNVHLVCEETANYLVIWCIDLE
Nucleotide Sequence TTGGTGAGTGGGGCTTGTGGGTTATGGGGGGCAAGGTCGAGGCAGGCCCTTTGCCTCCAGGGCCCTCCAGCACCTTGCCAGCATCTTCCCACAGGCATGCTTCGCCGCTGGGATGACAGCCAAAAGTACCTGTCAGACAACGTCCACCTGGTGTGCGAGGAGACAGCCAATTACCTGGTCATTTGGTGCATTGACCTAGAG
CircID chr19:10395237|10395495
ORF Type ORF6
Protein Length 28
Nucleotide Length 87
Protein Sequence MTAKSTCQTTSTWCARRQPITWSFGALT
Nucleotide Sequence ATGACAGCCAAAAGTACCTGTCAGACAACGTCCACCTGGTGTGCGAGGAGACAGCCAATTACCTGGTCATTTGGTGCATTGACCTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab