CircRNA Information

General Information
circRNA Basic Information
CircID chr19:10395286|10395490
Strand -
CircType exon
Host Gene ENSG00000105401.5;
Algorism CIRI2;
Sequence ACCAGGTGGACGTTGTCTGACAGGTACTTTTGGCTGTCATCCCAGCGGCGAAGCATGCCTGTGGGAAGATGCTGGCAAGGTGCTGGAGGGCCCTGGAGGCAAAGGGCCTGCCTCGACCTTGCCCCCCATAACCCACAAGCCCCACTCACCAAAGTGCTTGATCTGTTTCTCGTATTTTTCCACGAAGGTCTTGTGTTTCTGCTCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:10395286|10395490 hsa-miR-766-5p 0 0 1
chr19:10395286|10395490 hsa-miR-766-3p 0 0 1
chr19:10395286|10395490 hsa-miR-940 0 1 1
chr19:10395286|10395490 hsa-miR-1202 0 0 1
chr19:10395286|10395490 hsa-miR-548k 0 1 1
chr19:10395286|10395490 hsa-miR-548n 0 1 1
chr19:10395286|10395490 hsa-miR-1324 0 0 1
chr19:10395286|10395490 hsa-miR-1827 0 0 1
chr19:10395286|10395490 hsa-miR-188-3p 0 1 1
chr19:10395286|10395490 hsa-miR-338-3p 0 0 1
chr19:10395286|10395490 hsa-miR-1260 0 0 1
chr19:10395286|10395490 hsa-miR-9 0 0 1
chr19:10395286|10395490 hsa-miR-3166 0 1 0
chr19:10395286|10395490 hsa-miR-4468 0 1 0
chr19:10395286|10395490 hsa-miR-4481 1 1 0
chr19:10395286|10395490 hsa-miR-4507 1 0 0
chr19:10395286|10395490 hsa-miR-3972 0 1 0
chr19:10395286|10395490 hsa-miR-4651 1 0 0
chr19:10395286|10395490 hsa-miR-5682 0 1 0
chr19:10395286|10395490 hsa-miR-5787 1 0 0
chr19:10395286|10395490 hsa-miR-6081 0 1 0
chr19:10395286|10395490 hsa-miR-8077 1 0 0
chr19:10395286|10395490 hsa-miR-12115 1 0 0
chr19:10395286|10395490 hsa-miR-12120 0 1 0
chr19:10395286|10395490 hsa-miR-370-3p 1 0 0
chr19:10395286|10395490 hsa-miR-6836-3p 0 1 0
chr19:10395286|10395490 hsa-miR-6728-5p 0 1 0
chr19:10395286|10395490 hsa-miR-5187-5p 0 1 0
chr19:10395286|10395490 hsa-miR-6744-5p 0 1 0
chr19:10395286|10395490 hsa-miR-6793-5p 0 1 0
chr19:10395286|10395490 hsa-miR-6786-5p 1 0 0
chr19:10395286|10395490 hsa-miR-1229-5p 1 0 0
chr19:10395286|10395490 hsa-miR-3648 1 0 0
chr19:10395286|10395490 hsa-miR-6802-5p 1 0 0
chr19:10395286|10395490 hsa-miR-6513-5p 0 1 0
chr19:10395286|10395490 hsa-miR-1296-3p 0 1 0
chr19:10395286|10395490 hsa-miR-6851-3p 0 1 0
chr19:10395286|10395490 hsa-miR-4738-5p 0 1 0
chr19:10395286|10395490 hsa-miR-6769b-5p 1 0 0
chr19:10395286|10395490 hsa-miR-6778-5p 1 0 0
chr19:10395286|10395490 hsa-miR-6775-5p 0 1 0
chr19:10395286|10395490 hsa-miR-6756-5p 1 1 0
chr19:10395286|10395490 hsa-miR-6769a-5p 1 0 0
chr19:10395286|10395490 hsa-miR-6779-5p 1 0 0
chr19:10395286|10395490 hsa-miR-4728-5p 1 0 0
chr19:10395286|10395490 hsa-miR-1237-5p 0 1 0
chr19:10395286|10395490 hsa-miR-328-5p 1 1 0
chr19:10395286|10395490 hsa-miR-4745-5p 1 1 0
chr19:10395286|10395490 hsa-miR-6885-5p 0 1 0
chr19:10395286|10395490 hsa-miR-4758-5p 1 1 0
chr19:10395286|10395490 hsa-miR-3940-5p 1 0 0
chr19:10395286|10395490 hsa-miR-6790-5p 1 0 0
chr19:10395286|10395490 hsa-miR-619-5p 0 1 0
chr19:10395286|10395490 hsa-miR-6506-5p 0 1 0
chr19:10395286|10395490 hsa-miR-3121-5p 0 1 0
chr19:10395286|10395490 hsa-miR-548av-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:10395286|10395490
ORF Type ORF1
Protein Length 64
Nucleotide Length 192
Protein Sequence MSDRYFWLSSQRRSMPVGRCWQGAGGPWRQRACLDLAPHNPQAPLTKVLDLFLVFFHEGLVFLL
Nucleotide Sequence TTGTCTGACAGGTACTTTTGGCTGTCATCCCAGCGGCGAAGCATGCCTGTGGGAAGATGCTGGCAAGGTGCTGGAGGGCCCTGGAGGCAAAGGGCCTGCCTCGACCTTGCCCCCCATAACCCACAAGCCCCACTCACCAAAGTGCTTGATCTGTTTCTCGTATTTTTCCACGAAGGTCTTGTGTTTCTGCTC
CircID chr19:10395286|10395490
ORF Type ORF2
Protein Length 63
Nucleotide Length 189
Protein Sequence MTGTFGCHPSGEACLWEDAGKVLEGPGGKGPASTLPPITHKPHSPKCLICFSYFSTKVLCFCS
Nucleotide Sequence CTGACAGGTACTTTTGGCTGTCATCCCAGCGGCGAAGCATGCCTGTGGGAAGATGCTGGCAAGGTGCTGGAGGGCCCTGGAGGCAAAGGGCCTGCCTCGACCTTGCCCCCCATAACCCACAAGCCCCACTCACCAAAGTGCTTGATCTGTTTCTCGTATTTTTCCACGAAGGTCTTGTGTTTCTGCTCC
CircID chr19:10395286|10395490
ORF Type ORF3
Protein Length 33
Nucleotide Length 102
Protein Sequence MAVIPAAKHACGKMLARCWRALEAKGLPRPCPP
Nucleotide Sequence TTGGCTGTCATCCCAGCGGCGAAGCATGCCTGTGGGAAGATGCTGGCAAGGTGCTGGAGGGCCCTGGAGGCAAAGGGCCTGCCTCGACCTTGCCCCCCATAA
CircID chr19:10395286|10395490
ORF Type ORF4
Protein Length 33
Nucleotide Length 102
Protein Sequence MWVMGGKVEAGPLPPGPSSTLPASSHRHASPLG
Nucleotide Sequence TTGTGGGTTATGGGGGGCAAGGTCGAGGCAGGCCCTTTGCCTCCAGGGCCCTCCAGCACCTTGCCAGCATCTTCCCACAGGCATGCTTCGCCGCTGGGATGA
CircID chr19:10395286|10395490
ORF Type ORF5
Protein Length 50
Nucleotide Length 150
Protein Sequence MVSGACGLWGARSRQALCLQGPPAPCQHLPTGMLRRWDDSQKYLSDNVHL
Nucleotide Sequence TTGGTGAGTGGGGCTTGTGGGTTATGGGGGGCAAGGTCGAGGCAGGCCCTTTGCCTCCAGGGCCCTCCAGCACCTTGCCAGCATCTTCCCACAGGCATGCTTCGCCGCTGGGATGACAGCCAAAAGTACCTGTCAGACAACGTCCACCTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab