CircRNA Information

General Information
circRNA Basic Information
CircID chr19:10643569|10643735
Strand +
CircType exon
Host Gene ENSG00000129353.13;
Algorism CIRI2;
Sequence ACCGTCCTTCCTGTGGTCTGGCCCGTTGTCGTGTAAGCGGGGGACAGGAAGCATGAGGGAGCTTGTGGAGGTCGGGCCACGTGCCATCCCAGACATCAAGAGGCCCCAATGGGTTTTTACTTGTTTCTCGCAGTCTGGAGGGGCAGCCATGAAAACTCCAAGCGCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:10643569|10643735 hsa-miR-183-5p 0 0 1
chr19:10643569|10643735 hsa-miR-183-3p 0 0 1
chr19:10643569|10643735 hsa-miR-432-5p 0 0 1
chr19:10643569|10643735 hsa-miR-432-3p 0 0 1
chr19:10643569|10643735 hsa-miR-564 0 0 1
chr19:10643569|10643735 hsa-miR-604 0 0 1
chr19:10643569|10643735 hsa-miR-647 0 0 1
chr19:10643569|10643735 hsa-miR-660-5p 0 0 1
chr19:10643569|10643735 hsa-miR-660-3p 0 0 1
chr19:10643569|10643735 hsa-miR-1231 0 1 1
chr19:10643569|10643735 hsa-miR-663b 1 1 1
chr19:10643569|10643735 hsa-miR-1204 1 1 1
chr19:10643569|10643735 hsa-miR-654-3p 0 0 1
chr19:10643569|10643735 hsa-miR-140-3p 0 1 1
chr19:10643569|10643735 hsa-miR-324-3p 0 0 1
chr19:10643569|10643735 hsa-miR-516a-3p 0 0 1
chr19:10643569|10643735 hsa-miR-548d-3p 0 0 1
chr19:10643569|10643735 hsa-miR-1538 1 0 0
chr19:10643569|10643735 hsa-miR-1913 0 1 0
chr19:10643569|10643735 hsa-miR-4494 0 1 0
chr19:10643569|10643735 hsa-miR-6728-5p 0 1 0
chr19:10643569|10643735 hsa-miR-6840-5p 1 0 0
chr19:10643569|10643735 hsa-miR-3667-5p 0 1 0
chr19:10643569|10643735 hsa-miR-6735-3p 1 0 0
chr19:10643569|10643735 hsa-miR-6740-5p 0 1 0
chr19:10643569|10643735 hsa-miR-4640-5p 0 1 0
chr19:10643569|10643735 hsa-miR-889-5p 0 1 0
chr19:10643569|10643735 hsa-miR-7106-3p 0 1 0
chr19:10643569|10643735 hsa-miR-335-3p 0 1 0
chr19:10643569|10643735 hsa-miR-5589-3p 1 0 0
chr19:10643569|10643735 hsa-miR-6748-3p 0 1 0
chr19:10643569|10643735 hsa-miR-7152-5p 1 1 0
chr19:10643569|10643735 hsa-miR-6847-3p 0 1 0
chr19:10643569|10643735 hsa-miR-6790-3p 1 0 0
chr19:10643569|10643735 hsa-miR-4726-5p 0 1 0
chr19:10643569|10643735 hsa-miR-4757-5p 0 1 0
chr19:10643569|10643735 hsa-miR-6792-3p 1 0 0
chr19:10643569|10643735 hsa-miR-619-5p 0 1 0
chr19:10643569|10643735 hsa-miR-1234-3p 1 0 0
chr19:10643569|10643735 hsa-miR-7162-5p 0 1 0
chr19:10643569|10643735 hsa-miR-6506-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:10643569|10643735
ORF Type ORF1
Protein Length 52
Nucleotide Length 156
Protein Sequence MWSGPLSCKRGTGSMRELVEVGPRAIPDIKRPQWVFTCFSQSGGAAMKTPSA
Nucleotide Sequence CTGTGGTCTGGCCCGTTGTCGTGTAAGCGGGGGACAGGAAGCATGAGGGAGCTTGTGGAGGTCGGGCCACGTGCCATCCCAGACATCAAGAGGCCCCAATGGGTTTTTACTTGTTTCTCGCAGTCTGGAGGGGCAGCCATGAAAACTCCAAGCGCC
CircID chr19:10643569|10643735
ORF Type ORF2
Protein Length 29
Nucleotide Length 90
Protein Sequence MWRSGHVPSQTSRGPNGFLLVSRSLEGQP
Nucleotide Sequence TTGTGGAGGTCGGGCCACGTGCCATCCCAGACATCAAGAGGCCCCAATGGGTTTTTACTTGTTTCTCGCAGTCTGGAGGGGCAGCCATGA
CircID chr19:10643569|10643735
ORF Type ORF3
Protein Length 30
Nucleotide Length 90
Protein Sequence MGWHVARPPQAPSCFLSPAYTTTGQTTGRT
Nucleotide Sequence CTGGGATGGCACGTGGCCCGACCTCCACAAGCTCCCTCATGCTTCCTGTCCCCCGCTTACACGACAACGGGCCAGACCACAGGAAGGACG
CircID chr19:10643569|10643735
ORF Type ORF4
Protein Length 44
Nucleotide Length 132
Protein Sequence MRETSKNPLGPLDVWDGTWPDLHKLPHASCPPLTRQRARPQEGR
Nucleotide Sequence CTGCGAGAAACAAGTAAAAACCCATTGGGGCCTCTTGATGTCTGGGATGGCACGTGGCCCGACCTCCACAAGCTCCCTCATGCTTCCTGTCCCCCGCTTACACGACAACGGGCCAGACCACAGGAAGGACGG
CircID chr19:10643569|10643735
ORF Type ORF5
Protein Length 50
Nucleotide Length 150
Protein Sequence MAAPPDCEKQVKTHWGLLMSGMARGPTSTSSLMLPVPRLHDNGPDHRKDG
Nucleotide Sequence ATGGCTGCCCCTCCAGACTGCGAGAAACAAGTAAAAACCCATTGGGGCCTCTTGATGTCTGGGATGGCACGTGGCCCGACCTCCACAAGCTCCCTCATGCTTCCTGTCCCCCGCTTACACGACAACGGGCCAGACCACAGGAAGGACGGT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab