CircRNA Information

General Information
circRNA Basic Information
CircID chr19:10923880|10924139
Strand +
CircType exon
Host Gene ENSG00000130733.9;
Algorism CIRI2;
Sequence CTGACGCTGGTGCTGGCCCAGAGGAGGGACCCCTCCATCCACTACAGCCCCCAGTTCCACAAGGGTAAGCAGACGGGCAGGCCCAATGCCTGGCAGGGCCCTGGGGTACAGGGGGTGACTGCTCACCTTGCCCCCCCCAGTGACCGTGGCAGGCATCAGCATCTACTGCTATGCGTGGCTGGTGCCCCTGGCCCTGTGGGGCTTCCTGCGGTGGCGCAAGGGTGTCCAGGAGCGCATGGGGCCCTACACCTTCCTGGAGA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:10923880|10924139 hsa-miR-29a-5p 0 0 1
chr19:10923880|10924139 hsa-miR-29a-3p 0 0 1
chr19:10923880|10924139 hsa-miR-29c-5p 0 0 1
chr19:10923880|10924139 hsa-miR-29c-3p 0 0 1
chr19:10923880|10924139 hsa-miR-326 0 1 1
chr19:10923880|10924139 hsa-miR-612 0 0 1
chr19:10923880|10924139 hsa-miR-637 1 1 1
chr19:10923880|10924139 hsa-miR-1296-5p 0 0 1
chr19:10923880|10924139 hsa-miR-1296-3p 0 0 1
chr19:10923880|10924139 hsa-miR-766-5p 0 0 1
chr19:10923880|10924139 hsa-miR-766-3p 0 0 1
chr19:10923880|10924139 hsa-miR-665 1 0 1
chr19:10923880|10924139 hsa-miR-936 0 0 1
chr19:10923880|10924139 hsa-miR-1226-5p 0 0 1
chr19:10923880|10924139 hsa-miR-1226-3p 0 0 1
chr19:10923880|10924139 hsa-miR-1291 0 0 1
chr19:10923880|10924139 hsa-miR-1256 0 0 1
chr19:10923880|10924139 hsa-miR-671-5p 1 1 1
chr19:10923880|10924139 hsa-miR-486-5p 0 1 1
chr19:10923880|10924139 hsa-miR-296-5p 0 0 1
chr19:10923880|10924139 hsa-miR-615-5p 0 0 1
chr19:10923880|10924139 hsa-miR-330-5p 0 1 1
chr19:10923880|10924139 hsa-miR-142-3p 0 0 1
chr19:10923880|10924139 hsa-miR-220c 0 0 1
chr19:10923880|10924139 hsa-miR-1285 0 0 1
chr19:10923880|10924139 hsa-miR-29b 0 0 1
chr19:10923880|10924139 hsa-miR-346 1 1 0
chr19:10923880|10924139 hsa-miR-596 1 0 0
chr19:10923880|10924139 hsa-miR-632 1 0 0
chr19:10923880|10924139 hsa-miR-636 1 0 0
chr19:10923880|10924139 hsa-miR-762 1 0 0
chr19:10923880|10924139 hsa-miR-2861 1 1 0
chr19:10923880|10924139 hsa-miR-4323 0 1 0
chr19:10923880|10924139 hsa-miR-4274 0 1 0
chr19:10923880|10924139 hsa-miR-3918 0 1 0
chr19:10923880|10924139 hsa-miR-4476 0 1 0
chr19:10923880|10924139 hsa-miR-4673 0 1 0
chr19:10923880|10924139 hsa-miR-4675 0 1 0
chr19:10923880|10924139 hsa-miR-4688 0 1 0
chr19:10923880|10924139 hsa-miR-4741 1 1 0
chr19:10923880|10924139 hsa-miR-5193 0 1 0
chr19:10923880|10924139 hsa-miR-8075 0 1 0
chr19:10923880|10924139 hsa-miR-1843 0 1 0
chr19:10923880|10924139 hsa-miR-12115 1 0 0
chr19:10923880|10924139 hsa-miR-12121 0 1 0
chr19:10923880|10924139 hsa-miR-6879-3p 0 1 0
chr19:10923880|10924139 hsa-miR-6894-5p 1 0 0
chr19:10923880|10924139 hsa-miR-6833-5p 0 1 0
chr19:10923880|10924139 hsa-miR-593-5p 0 1 0
chr19:10923880|10924139 hsa-miR-874-5p 0 1 0
chr19:10923880|10924139 hsa-miR-6762-3p 1 0 0
chr19:10923880|10924139 hsa-miR-770-5p 0 1 0
chr19:10923880|10924139 hsa-miR-3189-5p 1 1 0
chr19:10923880|10924139 hsa-miR-4728-3p 0 1 0
chr19:10923880|10924139 hsa-miR-185-3p 1 0 0
chr19:10923880|10924139 hsa-miR-6805-5p 0 1 0
chr19:10923880|10924139 hsa-miR-4763-5p 0 1 0
chr19:10923880|10924139 hsa-miR-4640-5p 1 1 0
chr19:10923880|10924139 hsa-miR-4691-3p 0 1 0
chr19:10923880|10924139 hsa-miR-3691-5p 0 1 0
chr19:10923880|10924139 hsa-miR-619-3p 1 1 0
chr19:10923880|10924139 hsa-miR-6749-5p 1 0 0
chr19:10923880|10924139 hsa-miR-6834-5p 1 0 0
chr19:10923880|10924139 hsa-miR-4638-3p 0 1 0
chr19:10923880|10924139 hsa-miR-4667-3p 0 1 0
chr19:10923880|10924139 hsa-miR-4640-3p 0 1 0
chr19:10923880|10924139 hsa-miR-3065-3p 0 1 0
chr19:10923880|10924139 hsa-miR-6895-5p 0 1 0
chr19:10923880|10924139 hsa-miR-7160-3p 0 1 0
chr19:10923880|10924139 hsa-miR-135b-3p 0 1 0
chr19:10923880|10924139 hsa-miR-3681-5p 0 1 0
chr19:10923880|10924139 hsa-miR-1911-3p 0 1 0
chr19:10923880|10924139 hsa-miR-6872-3p 1 0 0
chr19:10923880|10924139 hsa-miR-4761-5p 0 1 0
chr19:10923880|10924139 hsa-miR-6802-3p 0 1 0
chr19:10923880|10924139 hsa-miR-20b-3p 0 1 0
chr19:10923880|10924139 hsa-miR-3200-3p 0 1 0
chr19:10923880|10924139 hsa-miR-506-5p 1 0 0
chr19:10923880|10924139 hsa-miR-6743-5p 0 1 0
chr19:10923880|10924139 hsa-miR-6803-5p 1 0 0
chr19:10923880|10924139 hsa-miR-6836-5p 0 1 0
chr19:10923880|10924139 hsa-miR-328-5p 1 1 0
chr19:10923880|10924139 hsa-miR-4685-5p 0 1 0
chr19:10923880|10924139 hsa-miR-4726-5p 0 1 0
chr19:10923880|10924139 hsa-miR-6846-5p 0 1 0
chr19:10923880|10924139 hsa-miR-6848-5p 1 1 0
chr19:10923880|10924139 hsa-miR-6885-5p 0 1 0
chr19:10923880|10924139 hsa-miR-939-5p 1 0 0
chr19:10923880|10924139 hsa-miR-6799-3p 0 1 0
chr19:10923880|10924139 hsa-miR-1914-3p 1 1 0
chr19:10923880|10924139 hsa-miR-6849-5p 0 1 0
chr19:10923880|10924139 hsa-miR-6724-5p 1 0 0
chr19:10923880|10924139 hsa-miR-4722-3p 0 1 0
chr19:10923880|10924139 hsa-miR-6837-5p 0 1 0
chr19:10923880|10924139 hsa-miR-9851-3p 0 1 0
chr19:10923880|10924139 hsa-miR-6764-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr19:10923880|10924139
ORF Type ORF1
Protein Length 86
Nucleotide Length 258
Protein Sequence LTLVLAQRRDPSIHYSPQFHKGKQTGRPNAWQGPGVQGVTAHLAPPSDRGRHQHLLLCVAGAPGPVGLPAVAQGCPGAHGALHLPG
Nucleotide Sequence CTGACGCTGGTGCTGGCCCAGAGGAGGGACCCCTCCATCCACTACAGCCCCCAGTTCCACAAGGGTAAGCAGACGGGCAGGCCCAATGCCTGGCAGGGCCCTGGGGTACAGGGGGTGACTGCTCACCTTGCCCCCCCCAGTGACCGTGGCAGGCATCAGCATCTACTGCTATGCGTGGCTGGTGCCCCTGGCCCTGTGGGGCTTCCTGCGGTGGCGCAAGGGTGTCCAGGAGCGCATGGGGCCCTACACCTTCCTGGA

CircID chr19:10923880|10924139
ORF Type ORF2
Protein Length 47
Nucleotide Length 141
Protein Sequence MLTLPPPVTVAGISIYCYAWLVPLALWGFLRWRKGVQERMGPYTFLE
Nucleotide Sequence CTGCTCACCTTGCCCCCCCCAGTGACCGTGGCAGGCATCAGCATCTACTGCTATGCGTGGCTGGTGCCCCTGGCCCTGTGGGGCTTCCTGCGGTGGCGCAAGGGTGTCCAGGAGCGCATGGGGCCCTACACCTTCCTGGAG

CircID chr19:10923880|10924139
ORF Type ORF3
Protein Length 30
Nucleotide Length 90
Protein Sequence MRGWCPWPCGASCGGARVSRSAWGPTPSWR
Nucleotide Sequence ATGCGTGGCTGGTGCCCCTGGCCCTGTGGGGCTTCCTGCGGTGGCGCAAGGGTGTCCAGGAGCGCATGGGGCCCTACACCTTCCTGGAGA

CircID chr19:10923880|10924139
ORF Type ORF4
Protein Length 76
Nucleotide Length 228
Protein Sequence MDTLAPPQEAPQGQGHQPRIAVDADACHGHWGGQGEQSPPVPQGPARHWACPSAYPCGTGGCSGWRGPSSGPAPAS
Nucleotide Sequence CTGGACACCCTTGCGCCACCGCAGGAAGCCCCACAGGGCCAGGGGCACCAGCCACGCATAGCAGTAGATGCTGATGCCTGCCACGGTCACTGGGGGGGGCAAGGTGAGCAGTCACCCCCTGTACCCCAGGGCCCTGCCAGGCATTGGGCCTGCCCGTCTGCTTACCCTTGTGGAACTGGGGGCTGTAGTGGATGGAGGGGTCCCTCCTCTGGGCCAGCACCAGCGTCA

CircID chr19:10923880|10924139
ORF Type ORF5
Protein Length 54
Nucleotide Length 162
Protein Sequence MLMPATVTGGGKVSSHPLYPRALPGIGPARLLTLVELGAVVDGGVPPLGQHQRQ
Nucleotide Sequence ATGCTGATGCCTGCCACGGTCACTGGGGGGGGCAAGGTGAGCAGTCACCCCCTGTACCCCAGGGCCCTGCCAGGCATTGGGCCTGCCCGTCTGCTTACCCTTGTGGAACTGGGGGCTGTAGTGGATGGAGGGGTCCCTCCTCTGGGCCAGCACCAGCGTCAG

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites