CircRNA Information

General Information
circRNA Basic Information
CircID chr19:11059849|11060187
Strand +
CircType exon
Host Gene ENSG00000127616.16;
Algorism CIRI2;
Sequence CTCCTCTTGTTCCTCCTCACTGTCATCGTCACTCACGACCGGCTTGGCTCGGGACCCTCGGCTCGGCCGCCGCCGGCCGCCCTTCAGCCGGTCCTGTGCCTTCTCCTTCCGGCCAAGCTTGATCTTCACTTTGACGGACCGAGCTGGAGGGGACCGGGAGGGAAAGACAGCCTTGAGCTCTGGGAATGCAGCACCCCCACAGCAAGGGGCGTCTGGGAGCCGGGAGGGCTGTGAAAAGCTGGGGCCTTGGGGGCTCTCGGGCCAGCGTGAACCCCGGCGTCCTGAACCCCCCCGGGACTCACATTCGGATTCGGAGCCTTCCTCCTCGCCCTCTTCCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:11059849|11060187 hsa-miR-27a-5p 0 0 1
chr19:11059849|11060187 hsa-miR-27a-3p 0 0 1
chr19:11059849|11060187 hsa-miR-27b-5p 0 0 1
chr19:11059849|11060187 hsa-miR-27b-3p 0 0 1
chr19:11059849|11060187 hsa-miR-511-5p 0 0 1
chr19:11059849|11060187 hsa-miR-511-3p 0 0 1
chr19:11059849|11060187 hsa-miR-520g-5p 0 0 1
chr19:11059849|11060187 hsa-miR-520g-3p 0 0 1
chr19:11059849|11060187 hsa-miR-520h 0 0 1
chr19:11059849|11060187 hsa-miR-506-5p 0 0 1
chr19:11059849|11060187 hsa-miR-506-3p 0 0 1
chr19:11059849|11060187 hsa-miR-626 0 0 1
chr19:11059849|11060187 hsa-miR-766-5p 0 0 1
chr19:11059849|11060187 hsa-miR-766-3p 0 0 1
chr19:11059849|11060187 hsa-miR-1225-3p 0 1 1
chr19:11059849|11060187 hsa-miR-491-5p 0 0 1
chr19:11059849|11060187 hsa-miR-423-3p 0 1 1
chr19:11059849|11060187 hsa-miR-615-3p 0 1 1
chr19:11059849|11060187 hsa-miR-513a-5p 0 0 1
chr19:11059849|11060187 hsa-miR-342-5p 0 0 1
chr19:11059849|11060187 hsa-miR-151-5p 0 0 1
chr19:11059849|11060187 hsa-miR-642 0 0 1
chr19:11059849|11060187 hsa-miR-124 0 0 1
chr19:11059849|11060187 hsa-miR-623 1 1 0
chr19:11059849|11060187 hsa-miR-650 1 0 0
chr19:11059849|11060187 hsa-miR-765 0 1 0
chr19:11059849|11060187 hsa-miR-921 1 0 0
chr19:11059849|11060187 hsa-miR-1268a 1 0 0
chr19:11059849|11060187 hsa-miR-3141 0 1 0
chr19:11059849|11060187 hsa-miR-4267 0 1 0
chr19:11059849|11060187 hsa-miR-4281 0 1 0
chr19:11059849|11060187 hsa-miR-4290 0 1 0
chr19:11059849|11060187 hsa-miR-3609 0 1 0
chr19:11059849|11060187 hsa-miR-3615 0 1 0
chr19:11059849|11060187 hsa-miR-3943 0 1 0
chr19:11059849|11060187 hsa-miR-1268b 1 0 0
chr19:11059849|11060187 hsa-miR-4428 0 1 0
chr19:11059849|11060187 hsa-miR-4447 0 1 0
chr19:11059849|11060187 hsa-miR-4448 0 1 0
chr19:11059849|11060187 hsa-miR-4449 1 1 0
chr19:11059849|11060187 hsa-miR-4453 0 1 0
chr19:11059849|11060187 hsa-miR-4467 0 1 0
chr19:11059849|11060187 hsa-miR-4488 1 0 0
chr19:11059849|11060187 hsa-miR-4502 1 0 0
chr19:11059849|11060187 hsa-miR-2392 1 0 0
chr19:11059849|11060187 hsa-miR-4516 0 1 0
chr19:11059849|11060187 hsa-miR-4533 1 1 0
chr19:11059849|11060187 hsa-miR-4537 0 1 0
chr19:11059849|11060187 hsa-miR-3960 1 1 0
chr19:11059849|11060187 hsa-miR-4658 1 0 0
chr19:11059849|11060187 hsa-miR-4682 1 0 0
chr19:11059849|11060187 hsa-miR-4689 0 1 0
chr19:11059849|11060187 hsa-miR-4706 1 1 0
chr19:11059849|11060187 hsa-miR-4739 1 1 0
chr19:11059849|11060187 hsa-miR-5190 1 0 0
chr19:11059849|11060187 hsa-miR-6090 1 0 0
chr19:11059849|11060187 hsa-miR-6125 0 1 0
chr19:11059849|11060187 hsa-miR-6133 0 1 0
chr19:11059849|11060187 hsa-miR-7150 1 0 0
chr19:11059849|11060187 hsa-miR-8070 1 0 0
chr19:11059849|11060187 hsa-miR-9899 1 0 0
chr19:11059849|11060187 hsa-miR-4747-3p 1 0 0
chr19:11059849|11060187 hsa-miR-4700-3p 0 1 0
chr19:11059849|11060187 hsa-miR-629-5p 0 1 0
chr19:11059849|11060187 hsa-miR-4665-3p 1 0 0
chr19:11059849|11060187 hsa-miR-7106-5p 1 0 0
chr19:11059849|11060187 hsa-miR-1236-5p 1 1 0
chr19:11059849|11060187 hsa-miR-6089 1 0 0
chr19:11059849|11060187 hsa-miR-6744-5p 1 0 0
chr19:11059849|11060187 hsa-miR-7160-5p 0 1 0
chr19:11059849|11060187 hsa-miR-3682-3p 1 0 0
chr19:11059849|11060187 hsa-miR-4728-3p 1 0 0
chr19:11059849|11060187 hsa-miR-7108-5p 1 0 0
chr19:11059849|11060187 hsa-miR-6798-5p 1 0 0
chr19:11059849|11060187 hsa-miR-6770-5p 0 1 0
chr19:11059849|11060187 hsa-miR-6760-5p 0 1 0
chr19:11059849|11060187 hsa-miR-5088-5p 0 1 0
chr19:11059849|11060187 hsa-miR-1226-5p 1 0 0
chr19:11059849|11060187 hsa-miR-3944-3p 1 0 0
chr19:11059849|11060187 hsa-miR-4743-5p 1 1 0
chr19:11059849|11060187 hsa-miR-6830-3p 0 1 0
chr19:11059849|11060187 hsa-miR-4787-5p 1 0 0
chr19:11059849|11060187 hsa-miR-4446-5p 0 1 0
chr19:11059849|11060187 hsa-miR-6717-5p 1 0 0
chr19:11059849|11060187 hsa-miR-6786-3p 0 1 0
chr19:11059849|11060187 hsa-miR-6781-5p 0 1 0
chr19:11059849|11060187 hsa-miR-7160-3p 1 1 0
chr19:11059849|11060187 hsa-miR-3922-5p 0 1 0
chr19:11059849|11060187 hsa-miR-4687-5p 0 1 0
chr19:11059849|11060187 hsa-miR-3180-5p 0 1 0
chr19:11059849|11060187 hsa-miR-6887-3p 0 1 0
chr19:11059849|11060187 hsa-miR-671-3p 0 1 0
chr19:11059849|11060187 hsa-miR-6826-3p 0 1 0
chr19:11059849|11060187 hsa-miR-6856-3p 0 1 0
chr19:11059849|11060187 hsa-miR-2277-5p 1 0 0
chr19:11059849|11060187 hsa-miR-502-5p 0 1 0
chr19:11059849|11060187 hsa-miR-1199-3p 0 1 0
chr19:11059849|11060187 hsa-miR-3670 0 1 0
chr19:11059849|11060187 hsa-miR-4740-3p 0 1 0
chr19:11059849|11060187 hsa-miR-124-3p 0 1 0
chr19:11059849|11060187 hsa-miR-10400-5p 1 1 0
chr19:11059849|11060187 hsa-miR-1207-5p 1 0 0
chr19:11059849|11060187 hsa-miR-4763-3p 1 0 0
chr19:11059849|11060187 hsa-miR-6769b-5p 1 0 0
chr19:11059849|11060187 hsa-miR-6743-5p 1 0 0
chr19:11059849|11060187 hsa-miR-6752-5p 1 1 0
chr19:11059849|11060187 hsa-miR-6754-5p 1 0 0
chr19:11059849|11060187 hsa-miR-6803-5p 0 1 0
chr19:11059849|11060187 hsa-miR-6842-5p 0 1 0
chr19:11059849|11060187 hsa-miR-1249-5p 0 1 0
chr19:11059849|11060187 hsa-miR-6797-5p 0 1 0
chr19:11059849|11060187 hsa-miR-7111-5p 1 0 0
chr19:11059849|11060187 hsa-miR-6780b-5p 1 1 0
chr19:11059849|11060187 hsa-miR-6836-5p 1 0 0
chr19:11059849|11060187 hsa-miR-1237-5p 1 0 0
chr19:11059849|11060187 hsa-miR-328-5p 1 0 0
chr19:11059849|11060187 hsa-miR-4649-5p 1 1 0
chr19:11059849|11060187 hsa-miR-4725-3p 1 1 0
chr19:11059849|11060187 hsa-miR-4745-5p 1 0 0
chr19:11059849|11060187 hsa-miR-6729-5p 1 0 0
chr19:11059849|11060187 hsa-miR-6858-5p 0 1 0
chr19:11059849|11060187 hsa-miR-6889-5p 1 0 0
chr19:11059849|11060187 hsa-miR-6831-5p 1 1 0
chr19:11059849|11060187 hsa-miR-4758-5p 1 1 0
chr19:11059849|11060187 hsa-miR-4664-5p 0 1 0
chr19:11059849|11060187 hsa-miR-6876-5p 0 1 0
chr19:11059849|11060187 hsa-miR-6891-5p 0 1 0
chr19:11059849|11060187 hsa-miR-4472 0 1 0
chr19:11059849|11060187 hsa-miR-9851-5p 1 0 0
chr19:11059849|11060187 hsa-miR-6876-3p 0 1 0
chr19:11059849|11060187 hsa-miR-5699-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:11059849|11060187
ORF Type ORF1
Protein Length 75
Nucleotide Length 228
Protein Sequence MFLLTVIVTHDRLGSGPSARPPPAALQPVLCLLLPAKLDLHFDGPSWRGPGGKDSLELWECSTPTARGVWEPGGL
Nucleotide Sequence TTGTTCCTCCTCACTGTCATCGTCACTCACGACCGGCTTGGCTCGGGACCCTCGGCTCGGCCGCCGCCGGCCGCCCTTCAGCCGGTCCTGTGCCTTCTCCTTCCGGCCAAGCTTGATCTTCACTTTGACGGACCGAGCTGGAGGGGACCGGGAGGGAAAGACAGCCTTGAGCTCTGGGAATGCAGCACCCCCACAGCAAGGGGCGTCTGGGAGCCGGGAGGGCTGTGA
CircID chr19:11059849|11060187
ORF Type ORF2
Protein Length 106
Nucleotide Length 318
Protein Sequence MSSSLTTGLARDPRLGRRRPPFSRSCAFSFRPSLIFTLTDRAGGDREGKTALSSGNAAPPQQGASGSREGCEKLGPWGLSGQREPRRPEPPRDSHSDSEPSSSPSS
Nucleotide Sequence CTGTCATCGTCACTCACGACCGGCTTGGCTCGGGACCCTCGGCTCGGCCGCCGCCGGCCGCCCTTCAGCCGGTCCTGTGCCTTCTCCTTCCGGCCAAGCTTGATCTTCACTTTGACGGACCGAGCTGGAGGGGACCGGGAGGGAAAGACAGCCTTGAGCTCTGGGAATGCAGCACCCCCACAGCAAGGGGCGTCTGGGAGCCGGGAGGGCTGTGAAAAGCTGGGGCCTTGGGGGCTCTCGGGCCAGCGTGAACCCCGGCGTCCTGAACCCCCCCGGGACTCACATTCGGATTCGGAGCCTTCCTCCTCGCCCTCTTCC
CircID chr19:11059849|11060187
ORF Type ORF3
Protein Length 53
Nucleotide Length 159
Protein Sequence MGMQHPHSKGRLGAGRAVKSWGLGGSRASVNPGVLNPPGTHIRIRSLPPRPLP
Nucleotide Sequence CTGGGAATGCAGCACCCCCACAGCAAGGGGCGTCTGGGAGCCGGGAGGGCTGTGAAAAGCTGGGGCCTTGGGGGCTCTCGGGCCAGCGTGAACCCCGGCGTCCTGAACCCCCCCGGGACTCACATTCGGATTCGGAGCCTTCCTCCTCGCCCTCTTCCT
CircID chr19:11059849|11060187
ORF Type ORF4
Protein Length 29
Nucleotide Length 87
Protein Sequence MKGGRRRPSRGSRAKPVVSDDDSEEEQEE
Nucleotide Sequence CTGAAGGGCGGCCGGCGGCGGCCGAGCCGAGGGTCCCGAGCCAAGCCGGTCGTGAGTGACGATGACAGTGAGGAGGAACAAGAGGAG
CircID chr19:11059849|11060187
ORF Type ORF5
Protein Length 78
Nucleotide Length 237
Protein Sequence MAREPPRPQLFTALPAPRRPLLWGCCIPRAQGCLSLPVPSSSVRQSEDQAWPEGEGTGPAEGRPAAAEPRVPSQAGRE
Nucleotide Sequence CTGGCCCGAGAGCCCCCAAGGCCCCAGCTTTTCACAGCCCTCCCGGCTCCCAGACGCCCCTTGCTGTGGGGGTGCTGCATTCCCAGAGCTCAAGGCTGTCTTTCCCTCCCGGTCCCCTCCAGCTCGGTCCGTCAAAGTGAAGATCAAGCTTGGCCGGAAGGAGAAGGCACAGGACCGGCTGAAGGGCGGCCGGCGGCGGCCGAGCCGAGGGTCCCGAGCCAAGCCGGTCGTGAGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab