CircRNA Information

General Information
circRNA Basic Information
CircID chr19:1113535|1113645
Strand -
CircType exon
Host Gene ENSG00000064932.14;
Algorism CIRI2;
Sequence CTCCGCCACCCGCTGGGGGCCGCCCAGCTGGTCGATGAGCTCGTCCAGGGTGTTGACTGGCAGTTCCCGGCCCAGCCGCCGCACTTTGTCCAGCAGATCCTGCTTCAGCCG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:1113535|1113645 hsa-miR-17-5p 0 0 1
chr19:1113535|1113645 hsa-miR-17-3p 0 0 1
chr19:1113535|1113645 hsa-miR-20a-5p 0 0 1
chr19:1113535|1113645 hsa-miR-20a-3p 0 0 1
chr19:1113535|1113645 hsa-miR-93-5p 0 0 1
chr19:1113535|1113645 hsa-miR-93-3p 0 0 1
chr19:1113535|1113645 hsa-miR-106a-5p 0 0 1
chr19:1113535|1113645 hsa-miR-106a-3p 0 0 1
chr19:1113535|1113645 hsa-miR-106b-5p 0 0 1
chr19:1113535|1113645 hsa-miR-106b-3p 0 0 1
chr19:1113535|1113645 hsa-miR-20b-5p 0 0 1
chr19:1113535|1113645 hsa-miR-20b-3p 0 0 1
chr19:1113535|1113645 hsa-miR-519d-5p 0 0 1
chr19:1113535|1113645 hsa-miR-519d-3p 0 0 1
chr19:1113535|1113645 hsa-miR-520g-5p 0 0 1
chr19:1113535|1113645 hsa-miR-520g-3p 0 0 1
chr19:1113535|1113645 hsa-miR-520h 0 0 1
chr19:1113535|1113645 hsa-miR-505-5p 0 0 1
chr19:1113535|1113645 hsa-miR-505-3p 0 0 1
chr19:1113535|1113645 hsa-miR-1287-5p 0 0 1
chr19:1113535|1113645 hsa-miR-1287-3p 0 0 1
chr19:1113535|1113645 hsa-miR-361-3p 0 0 1
chr19:1113535|1113645 hsa-miR-1207-3p 0 0 1
chr19:1113535|1113645 hsa-miR-886-3p 0 0 1
chr19:1113535|1113645 hsa-miR-762 1 0 0
chr19:1113535|1113645 hsa-miR-3185 1 0 0
chr19:1113535|1113645 hsa-miR-3196 1 0 0
chr19:1113535|1113645 hsa-miR-3135b 1 0 0
chr19:1113535|1113645 hsa-miR-4467 1 0 0
chr19:1113535|1113645 hsa-miR-4505 1 1 0
chr19:1113535|1113645 hsa-miR-3960 1 1 0
chr19:1113535|1113645 hsa-miR-4686 0 1 0
chr19:1113535|1113645 hsa-miR-4739 1 0 0
chr19:1113535|1113645 hsa-miR-4741 1 0 0
chr19:1113535|1113645 hsa-miR-5787 1 1 0
chr19:1113535|1113645 hsa-miR-6081 1 0 0
chr19:1113535|1113645 hsa-miR-6133 1 0 0
chr19:1113535|1113645 hsa-miR-6860 1 0 0
chr19:1113535|1113645 hsa-miR-3692-5p 0 1 0
chr19:1113535|1113645 hsa-miR-6089 1 0 0
chr19:1113535|1113645 hsa-miR-4722-5p 1 0 0
chr19:1113535|1113645 hsa-miR-7160-5p 1 0 0
chr19:1113535|1113645 hsa-miR-6786-5p 1 0 0
chr19:1113535|1113645 hsa-miR-4690-5p 1 0 0
chr19:1113535|1113645 hsa-miR-4638-3p 0 1 0
chr19:1113535|1113645 hsa-miR-3690 0 1 0
chr19:1113535|1113645 hsa-miR-937-5p 1 0 0
chr19:1113535|1113645 hsa-miR-7850-5p 1 0 0
chr19:1113535|1113645 hsa-miR-4776-5p 1 0 0
chr19:1113535|1113645 hsa-miR-6792-5p 1 0 0
chr19:1113535|1113645 hsa-miR-10400-5p 1 0 0
chr19:1113535|1113645 hsa-miR-6769b-5p 1 0 0
chr19:1113535|1113645 hsa-miR-6819-5p 1 0 0
chr19:1113535|1113645 hsa-miR-3620-5p 1 0 0
chr19:1113535|1113645 hsa-miR-10396b-5p 1 0 0
chr19:1113535|1113645 hsa-miR-4649-5p 1 0 0
chr19:1113535|1113645 hsa-miR-4745-5p 1 0 0
chr19:1113535|1113645 hsa-miR-6729-5p 1 0 0
chr19:1113535|1113645 hsa-miR-6848-5p 1 0 0
chr19:1113535|1113645 hsa-miR-3187-5p 1 1 0
chr19:1113535|1113645 hsa-miR-6791-5p 1 0 0
chr19:1113535|1113645 hsa-miR-4722-3p 0 1 0
chr19:1113535|1113645 hsa-miR-549a-5p 0 1 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:1113535|1113645
ORF Type ORF1
Protein Length 33
Nucleotide Length 99
Protein Sequence MGAAQLVDELVQGVDWQFPAQPPHFVQQILLQP
Nucleotide Sequence CTGGGGGCCGCCCAGCTGGTCGATGAGCTCGTCCAGGGTGTTGACTGGCAGTTCCCGGCCCAGCCGCCGCACTTTGTCCAGCAGATCCTGCTTCAGCCG
CircID chr19:1113535|1113645
ORF Type ORF2
Protein Length 25
Nucleotide Length 75
Protein Sequence MSSSRVLTGSSRPSRRTLSSRSCFS
Nucleotide Sequence ATGAGCTCGTCCAGGGTGTTGACTGGCAGTTCCCGGCCCAGCCGCCGCACTTTGTCCAGCAGATCCTGCTTCAGC
CircID chr19:1113535|1113645
ORF Type ORF3
Protein Length 36
Nucleotide Length 108
Protein Sequence MKQDLLDKVRRLGRELPVNTLDELIDQLGGPQRVAE
Nucleotide Sequence CTGAAGCAGGATCTGCTGGACAAAGTGCGGCGGCTGGGCCGGGAACTGCCAGTCAACACCCTGGACGAGCTCATCGACCAGCTGGGCGGCCCCCAGCGGGTGGCGGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab