CircRNA Information

General Information
circRNA Basic Information
CircID chr19:1234743|1234911
Strand -
CircType exon
Host Gene ENSG00000099625.11;
Algorism CIRI2;
Sequence CTGCGACAGCATCTGGCCATCAGAGCCCGCCCACCTCCCATGCCCGATGCCCCAGCTGCCGTGCTCTGCCATCCACCCTGCCGGCCTGGGCAGGGGCAGGCGAAAGGGGGGCAACTGGCCAAGGCCGCCCCACCCCACGGTCCCAGTCCAGGAGCCTCTGCCTTGGTCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:1234743|1234911 hsa-miR-422a 0 0 1
chr19:1234743|1234911 hsa-miR-588 0 0 1
chr19:1234743|1234911 hsa-miR-608 1 1 1
chr19:1234743|1234911 hsa-miR-626 0 0 1
chr19:1234743|1234911 hsa-miR-541-5p 0 0 1
chr19:1234743|1234911 hsa-miR-541-3p 0 0 1
chr19:1234743|1234911 hsa-miR-760 1 0 1
chr19:1234743|1234911 hsa-miR-1288-5p 0 0 1
chr19:1234743|1234911 hsa-miR-1288-3p 0 0 1
chr19:1234743|1234911 hsa-miR-486-3p 0 0 1
chr19:1234743|1234911 hsa-miR-654-5p 0 0 1
chr19:1234743|1234911 hsa-miR-1207-3p 0 0 1
chr19:1234743|1234911 hsa-miR-1207-5p 1 1 1
chr19:1234743|1234911 hsa-miR-324-3p 0 0 1
chr19:1234743|1234911 hsa-miR-342-5p 0 0 1
chr19:1234743|1234911 hsa-miR-378 0 0 1
chr19:1234743|1234911 hsa-miR-1269 0 0 1
chr19:1234743|1234911 hsa-miR-612 1 0 0
chr19:1234743|1234911 hsa-miR-638 1 1 0
chr19:1234743|1234911 hsa-miR-762 1 1 0
chr19:1234743|1234911 hsa-miR-1182 1 0 0
chr19:1234743|1234911 hsa-miR-1268a 1 0 0
chr19:1234743|1234911 hsa-miR-1269a 0 1 0
chr19:1234743|1234911 hsa-miR-1913 0 1 0
chr19:1234743|1234911 hsa-miR-2861 1 0 0
chr19:1234743|1234911 hsa-miR-378b 0 1 0
chr19:1234743|1234911 hsa-miR-3141 1 0 0
chr19:1234743|1234911 hsa-miR-1193 1 0 0
chr19:1234743|1234911 hsa-miR-3188 1 0 0
chr19:1234743|1234911 hsa-miR-3196 0 1 0
chr19:1234743|1234911 hsa-miR-378c 0 1 0
chr19:1234743|1234911 hsa-miR-4292 1 0 0
chr19:1234743|1234911 hsa-miR-3714 0 1 0
chr19:1234743|1234911 hsa-miR-1268b 1 0 0
chr19:1234743|1234911 hsa-miR-378e 0 1 0
chr19:1234743|1234911 hsa-miR-378f 0 1 0
chr19:1234743|1234911 hsa-miR-3689c 0 1 0
chr19:1234743|1234911 hsa-miR-4488 1 0 0
chr19:1234743|1234911 hsa-miR-4498 1 0 0
chr19:1234743|1234911 hsa-miR-1269b 0 1 0
chr19:1234743|1234911 hsa-miR-378i 0 1 0
chr19:1234743|1234911 hsa-miR-1587 1 0 0
chr19:1234743|1234911 hsa-miR-4651 1 1 0
chr19:1234743|1234911 hsa-miR-4675 1 0 0
chr19:1234743|1234911 hsa-miR-4706 1 0 0
chr19:1234743|1234911 hsa-miR-4739 1 0 0
chr19:1234743|1234911 hsa-miR-4767 1 0 0
chr19:1234743|1234911 hsa-miR-5787 1 1 0
chr19:1234743|1234911 hsa-miR-8072 1 0 0
chr19:1234743|1234911 hsa-miR-8075 1 0 0
chr19:1234743|1234911 hsa-miR-8089 1 0 0
chr19:1234743|1234911 hsa-miR-4435 0 1 0
chr19:1234743|1234911 hsa-miR-6894-5p 1 0 0
chr19:1234743|1234911 hsa-miR-4687-3p 1 0 0
chr19:1234743|1234911 hsa-miR-210-5p 0 1 0
chr19:1234743|1234911 hsa-miR-6799-5p 1 1 0
chr19:1234743|1234911 hsa-miR-7114-5p 1 0 0
chr19:1234743|1234911 hsa-miR-6089 1 1 0
chr19:1234743|1234911 hsa-miR-6880-5p 1 0 0
chr19:1234743|1234911 hsa-miR-6727-5p 1 0 0
chr19:1234743|1234911 hsa-miR-3622b-5p 1 1 0
chr19:1234743|1234911 hsa-miR-6759-5p 1 0 0
chr19:1234743|1234911 hsa-miR-197-5p 1 0 0
chr19:1234743|1234911 hsa-miR-8069 1 0 0
chr19:1234743|1234911 hsa-miR-6742-5p 1 1 0
chr19:1234743|1234911 hsa-miR-6871-5p 0 1 0
chr19:1234743|1234911 hsa-miR-6748-5p 1 0 0
chr19:1234743|1234911 hsa-miR-6732-5p 1 0 0
chr19:1234743|1234911 hsa-miR-2467-5p 1 0 0
chr19:1234743|1234911 hsa-miR-6782-5p 1 0 0
chr19:1234743|1234911 hsa-miR-30b-3p 0 1 0
chr19:1234743|1234911 hsa-miR-3934-3p 1 0 0
chr19:1234743|1234911 hsa-miR-4763-5p 0 1 0
chr19:1234743|1234911 hsa-miR-1229-5p 1 0 0
chr19:1234743|1234911 hsa-miR-6753-5p 1 1 0
chr19:1234743|1234911 hsa-miR-3691-5p 1 1 0
chr19:1234743|1234911 hsa-miR-5001-3p 0 1 0
chr19:1234743|1234911 hsa-miR-1908-5p 1 0 0
chr19:1234743|1234911 hsa-miR-1228-5p 1 1 0
chr19:1234743|1234911 hsa-miR-6749-5p 1 0 0
chr19:1234743|1234911 hsa-miR-4743-5p 1 0 0
chr19:1234743|1234911 hsa-miR-149-3p 1 0 0
chr19:1234743|1234911 hsa-miR-6802-5p 1 0 0
chr19:1234743|1234911 hsa-miR-4640-3p 0 1 0
chr19:1234743|1234911 hsa-miR-5010-5p 1 1 0
chr19:1234743|1234911 hsa-miR-4750-5p 1 0 0
chr19:1234743|1234911 hsa-miR-6868-5p 0 1 0
chr19:1234743|1234911 hsa-miR-6501-3p 0 1 0
chr19:1234743|1234911 hsa-miR-2277-5p 1 0 0
chr19:1234743|1234911 hsa-miR-3177-3p 1 1 0
chr19:1234743|1234911 hsa-miR-10400-5p 1 0 0
chr19:1234743|1234911 hsa-miR-1233-5p 1 0 0
chr19:1234743|1234911 hsa-miR-3689b-3p 0 1 0
chr19:1234743|1234911 hsa-miR-4763-3p 1 1 0
chr19:1234743|1234911 hsa-miR-6769b-5p 1 0 0
chr19:1234743|1234911 hsa-miR-6787-5p 1 0 0
chr19:1234743|1234911 hsa-miR-6812-5p 0 1 0
chr19:1234743|1234911 hsa-miR-6816-5p 1 0 0
chr19:1234743|1234911 hsa-miR-6775-5p 1 1 0
chr19:1234743|1234911 hsa-miR-6737-5p 1 1 0
chr19:1234743|1234911 hsa-miR-6756-5p 1 1 0
chr19:1234743|1234911 hsa-miR-6803-5p 1 0 0
chr19:1234743|1234911 hsa-miR-6819-5p 1 1 0
chr19:1234743|1234911 hsa-miR-6842-5p 1 0 0
chr19:1234743|1234911 hsa-miR-6851-5p 1 0 0
chr19:1234743|1234911 hsa-miR-6722-3p 1 0 0
chr19:1234743|1234911 hsa-miR-6751-5p 1 0 0
chr19:1234743|1234911 hsa-miR-6779-5p 1 1 0
chr19:1234743|1234911 hsa-miR-4685-3p 0 1 0
chr19:1234743|1234911 hsa-miR-3620-5p 1 1 0
chr19:1234743|1234911 hsa-miR-6836-5p 1 0 0
chr19:1234743|1234911 hsa-miR-10396b-5p 1 0 0
chr19:1234743|1234911 hsa-miR-1237-5p 1 0 0
chr19:1234743|1234911 hsa-miR-328-5p 1 0 0
chr19:1234743|1234911 hsa-miR-3689a-3p 0 1 0
chr19:1234743|1234911 hsa-miR-4632-5p 1 0 0
chr19:1234743|1234911 hsa-miR-4649-5p 1 0 0
chr19:1234743|1234911 hsa-miR-4685-5p 1 0 0
chr19:1234743|1234911 hsa-miR-6729-5p 1 0 0
chr19:1234743|1234911 hsa-miR-6848-5p 1 0 0
chr19:1234743|1234911 hsa-miR-3940-5p 1 0 0
chr19:1234743|1234911 hsa-miR-378a-3p 0 1 0
chr19:1234743|1234911 hsa-miR-6766-5p 0 1 0
chr19:1234743|1234911 hsa-miR-6785-5p 1 0 0
chr19:1234743|1234911 hsa-miR-9851-5p 0 1 0
chr19:1234743|1234911 hsa-miR-10400-3p 1 0 0
chr19:1234743|1234911 hsa-miR-363-5p 0 1 0
chr19:1234743|1234911 hsa-miR-378d 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr19:1234743|1234911
ORF Type ORF1
Protein Length 56
Nucleotide Length 168
Protein Sequence LRQHLAIRARPPPMPDAPAAVLCHPPCRPGQGQAKGGQLAKAAPPHGPSPGASALV
Nucleotide Sequence CTGCGACAGCATCTGGCCATCAGAGCCCGCCCACCTCCCATGCCCGATGCCCCAGCTGCCGTGCTCTGCCATCCACCCTGCCGGCCTGGGCAGGGGCAGGCGAAAGGGGGGCAACTGGCCAAGGCCGCCCCACCCCACGGTCCCAGTCCAGGAGCCTCTGCCTTGGTC

CircID chr19:1234743|1234911
ORF Type ORF2
Protein Length 41
Nucleotide Length 123
Protein Sequence MPQLPCSAIHPAGLGRGRRKGGNWPRPPHPTVPVQEPLPWS
Nucleotide Sequence ATGCCCCAGCTGCCGTGCTCTGCCATCCACCCTGCCGGCCTGGGCAGGGGCAGGCGAAAGGGGGGCAACTGGCCAAGGCCGCCCCACCCCACGGTCCCAGTCCAGGAGCCTCTGCCTTGGTCC

CircID chr19:1234743|1234911
ORF Type ORF3
Protein Length 34
Nucleotide Length 102
Protein Sequence MPSTLPAWAGAGERGATGQGRPTPRSQSRSLCLG
Nucleotide Sequence CTGCCATCCACCCTGCCGGCCTGGGCAGGGGCAGGCGAAAGGGGGGCAACTGGCCAAGGCCGCCCCACCCCACGGTCCCAGTCCAGGAGCCTCTGCCTTGGT

CircID chr19:1234743|1234911
ORF Type ORF4
Protein Length 43
Nucleotide Length 132
Protein Sequence MDWDRGVGRPWPVAPLSPAPAQAGRVDGRARQLGHRAWEVGGL
Nucleotide Sequence CTGGACTGGGACCGTGGGGTGGGGCGGCCTTGGCCAGTTGCCCCCCTTTCGCCTGCCCCTGCCCAGGCCGGCAGGGTGGATGGCAGAGCACGGCAGCTGGGGCATCGGGCATGGGAGGTGGGCGGGCTCTGA

CircID chr19:1234743|1234911
ORF Type ORF5
Protein Length 38
Nucleotide Length 114
Protein Sequence MPPFRLPLPRPAGWMAEHGSWGIGHGRWAGSDGQMLSQ
Nucleotide Sequence TTGCCCCCCTTTCGCCTGCCCCTGCCCAGGCCGGCAGGGTGGATGGCAGAGCACGGCAGCTGGGGCATCGGGCATGGGAGGTGGGCGGGCTCTGATGGCCAGATGCTGTCGCAG

CircID chr19:1234743|1234911
ORF Type ORF6
Protein Length 48
Nucleotide Length 144
Protein Sequence MGPWGGAALASCPPFACPCPGRQGGWQSTAAGASGMGGGRALMARCCR
Nucleotide Sequence CTGGGACCGTGGGGTGGGGCGGCCTTGGCCAGTTGCCCCCCTTTCGCCTGCCCCTGCCCAGGCCGGCAGGGTGGATGGCAGAGCACGGCAGCTGGGGCATCGGGCATGGGAGGTGGGCGGGCTCTGATGGCCAGATGCTGTCGC

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites