CircRNA Information

General Information
circRNA Basic Information
CircID chr19:1244556|1244723
Strand -
CircType exon
Host Gene ENSG00000099624.6;
Algorism CIRI2;
Sequence CAGAGGGCAGTGCAGGCTTCTGCCTGGGCCCCAGGCCCTGCCTGTGTTGAAAGCTCTGGGGACTGGGCCAGGGAAGCTCCTCCTCAGCTTTGAGCTGTGGCTGCCACCCATGGGGCTCTCCTTCCGCCTCTCAAGATCCCCCCAGCCTGACGGGCCGCTTACCATCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:1244556|1244723 hsa-miR-320a-5p 0 0 1
chr19:1244556|1244723 hsa-miR-320a-3p 0 0 1
chr19:1244556|1244723 hsa-miR-484 0 0 1
chr19:1244556|1244723 hsa-miR-526b-5p 0 0 1
chr19:1244556|1244723 hsa-miR-526b-3p 0 0 1
chr19:1244556|1244723 hsa-miR-596 0 1 1
chr19:1244556|1244723 hsa-miR-637 0 0 1
chr19:1244556|1244723 hsa-miR-661 0 1 1
chr19:1244556|1244723 hsa-miR-421 0 0 1
chr19:1244556|1244723 hsa-miR-765 0 0 1
chr19:1244556|1244723 hsa-miR-298 0 1 1
chr19:1244556|1244723 hsa-miR-708-5p 0 0 1
chr19:1244556|1244723 hsa-miR-708-3p 0 0 1
chr19:1244556|1244723 hsa-miR-940 0 1 1
chr19:1244556|1244723 hsa-miR-1293 0 0 1
chr19:1244556|1244723 hsa-miR-1305 0 0 1
chr19:1244556|1244723 hsa-miR-1225-3p 0 1 1
chr19:1244556|1244723 hsa-miR-885-3p 0 0 1
chr19:1244556|1244723 hsa-miR-330-3p 0 0 1
chr19:1244556|1244723 hsa-miR-28-5p 0 0 1
chr19:1244556|1244723 hsa-miR-1207-5p 0 0 1
chr19:1244556|1244723 hsa-miR-320b 0 1 1
chr19:1244556|1244723 hsa-miR-320c 0 1 1
chr19:1244556|1244723 hsa-miR-320d 0 1 1
chr19:1244556|1244723 hsa-miR-1274a 0 0 1
chr19:1244556|1244723 hsa-miR-1308 0 0 1
chr19:1244556|1244723 hsa-miR-608 1 0 0
chr19:1244556|1244723 hsa-miR-638 1 0 0
chr19:1244556|1244723 hsa-miR-658 1 0 0
chr19:1244556|1244723 hsa-miR-762 1 0 0
chr19:1244556|1244723 hsa-miR-1182 1 0 0
chr19:1244556|1244723 hsa-miR-663b 1 0 0
chr19:1244556|1244723 hsa-miR-1538 1 0 0
chr19:1244556|1244723 hsa-miR-2861 0 1 0
chr19:1244556|1244723 hsa-miR-3135a 0 1 0
chr19:1244556|1244723 hsa-miR-1193 0 1 0
chr19:1244556|1244723 hsa-miR-3652 1 0 0
chr19:1244556|1244723 hsa-miR-3937 1 0 0
chr19:1244556|1244723 hsa-miR-3943 1 0 0
chr19:1244556|1244723 hsa-miR-4429 0 1 0
chr19:1244556|1244723 hsa-miR-4449 1 0 0
chr19:1244556|1244723 hsa-miR-4450 1 1 0
chr19:1244556|1244723 hsa-miR-4484 1 0 0
chr19:1244556|1244723 hsa-miR-4505 1 0 0
chr19:1244556|1244723 hsa-miR-2392 1 0 0
chr19:1244556|1244723 hsa-miR-4514 0 1 0
chr19:1244556|1244723 hsa-miR-4533 0 1 0
chr19:1244556|1244723 hsa-miR-4654 1 0 0
chr19:1244556|1244723 hsa-miR-4656 1 0 0
chr19:1244556|1244723 hsa-miR-4673 1 1 0
chr19:1244556|1244723 hsa-miR-4689 1 0 0
chr19:1244556|1244723 hsa-miR-4692 0 1 0
chr19:1244556|1244723 hsa-miR-4739 1 0 0
chr19:1244556|1244723 hsa-miR-4741 1 0 0
chr19:1244556|1244723 hsa-miR-5787 1 0 0
chr19:1244556|1244723 hsa-miR-6125 0 1 0
chr19:1244556|1244723 hsa-miR-6132 0 1 0
chr19:1244556|1244723 hsa-miR-8089 1 0 0
chr19:1244556|1244723 hsa-miR-12115 1 0 0
chr19:1244556|1244723 hsa-miR-6734-5p 1 0 0
chr19:1244556|1244723 hsa-miR-4731-5p 1 1 0
chr19:1244556|1244723 hsa-miR-6765-5p 1 0 0
chr19:1244556|1244723 hsa-miR-1227-5p 0 1 0
chr19:1244556|1244723 hsa-miR-8069 1 0 0
chr19:1244556|1244723 hsa-miR-3189-5p 0 1 0
chr19:1244556|1244723 hsa-miR-6768-5p 0 1 0
chr19:1244556|1244723 hsa-miR-3180-3p 1 0 0
chr19:1244556|1244723 hsa-miR-3194-5p 1 0 0
chr19:1244556|1244723 hsa-miR-6852-5p 0 1 0
chr19:1244556|1244723 hsa-miR-7109-5p 1 0 0
chr19:1244556|1244723 hsa-miR-3944-3p 1 0 0
chr19:1244556|1244723 hsa-miR-6753-5p 1 0 0
chr19:1244556|1244723 hsa-miR-4691-3p 0 1 0
chr19:1244556|1244723 hsa-miR-6749-5p 1 1 0
chr19:1244556|1244723 hsa-miR-6501-5p 1 0 0
chr19:1244556|1244723 hsa-miR-4787-5p 1 0 0
chr19:1244556|1244723 hsa-miR-4446-5p 0 1 0
chr19:1244556|1244723 hsa-miR-4446-3p 1 0 0
chr19:1244556|1244723 hsa-miR-7156-3p 1 0 0
chr19:1244556|1244723 hsa-miR-7843-3p 0 1 0
chr19:1244556|1244723 hsa-miR-7112-5p 0 1 0
chr19:1244556|1244723 hsa-miR-4707-5p 1 0 0
chr19:1244556|1244723 hsa-miR-10400-5p 1 0 0
chr19:1244556|1244723 hsa-miR-1233-5p 1 0 0
chr19:1244556|1244723 hsa-miR-4763-3p 1 1 0
chr19:1244556|1244723 hsa-miR-6787-5p 1 0 0
chr19:1244556|1244723 hsa-miR-6812-5p 1 0 0
chr19:1244556|1244723 hsa-miR-6865-5p 1 0 0
chr19:1244556|1244723 hsa-miR-1343-5p 1 0 0
chr19:1244556|1244723 hsa-miR-5001-5p 1 0 0
chr19:1244556|1244723 hsa-miR-6752-5p 1 0 0
chr19:1244556|1244723 hsa-miR-6756-5p 1 0 0
chr19:1244556|1244723 hsa-miR-6803-5p 1 0 0
chr19:1244556|1244723 hsa-miR-7107-5p 1 1 0
chr19:1244556|1244723 hsa-miR-7110-5p 1 0 0
chr19:1244556|1244723 hsa-miR-6808-5p 1 1 0
chr19:1244556|1244723 hsa-miR-7111-5p 1 0 0
chr19:1244556|1244723 hsa-miR-1915-3p 1 0 0
chr19:1244556|1244723 hsa-miR-6836-5p 1 1 0
chr19:1244556|1244723 hsa-miR-328-5p 1 0 0
chr19:1244556|1244723 hsa-miR-4685-5p 1 1 0
chr19:1244556|1244723 hsa-miR-6795-5p 1 1 0
chr19:1244556|1244723 hsa-miR-6858-5p 0 1 0
chr19:1244556|1244723 hsa-miR-6887-5p 1 1 0
chr19:1244556|1244723 hsa-miR-4723-5p 1 0 0
chr19:1244556|1244723 hsa-miR-6885-5p 1 0 0
chr19:1244556|1244723 hsa-miR-939-5p 1 0 0
chr19:1244556|1244723 hsa-miR-1910-3p 0 1 0
chr19:1244556|1244723 hsa-miR-6511a-5p 0 1 0
chr19:1244556|1244723 hsa-miR-6766-5p 1 0 0
chr19:1244556|1244723 hsa-miR-4667-5p 1 0 0
chr19:1244556|1244723 hsa-miR-6791-5p 0 1 0
chr19:1244556|1244723 hsa-miR-6762-5p 1 0 0
chr19:1244556|1244723 hsa-miR-6775-3p 1 0 0
chr19:1244556|1244723 hsa-miR-3130-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr19:1244556|1244723
ORF Type ORF1
Protein Length 49
Nucleotide Length 147
Protein Sequence MPGPQALPVLKALGTGPGKLLLSFELWLPPMGLSFRLSRSPQPDGPLTI
Nucleotide Sequence CTGCCTGGGCCCCAGGCCCTGCCTGTGTTGAAAGCTCTGGGGACTGGGCCAGGGAAGCTCCTCCTCAGCTTTGAGCTGTGGCTGCCACCCATGGGGCTCTCCTTCCGCCTCTCAAGATCCCCCCAGCCTGACGGGCCGCTTACCATC
CircID chr19:1244556|1244723
ORF Type ORF2
Protein Length 35
Nucleotide Length 105
Protein Sequence MGQGSSSSALSCGCHPWGSPSASQDPPSLTGRLPS
Nucleotide Sequence CTGGGCCAGGGAAGCTCCTCCTCAGCTTTGAGCTGTGGCTGCCACCCATGGGGCTCTCCTTCCGCCTCTCAAGATCCCCCCAGCCTGACGGGCCGCTTACCATCC
CircID chr19:1244556|1244723
ORF Type ORF3
Protein Length 55
Nucleotide Length 165
Protein Sequence MVSGPSGWGDLERRKESPMGGSHSSKLRRSFPGPVPRAFNTGRAWGPGRSLHCPL
Nucleotide Sequence ATGGTAAGCGGCCCGTCAGGCTGGGGGGATCTTGAGAGGCGGAAGGAGAGCCCCATGGGTGGCAGCCACAGCTCAAAGCTGAGGAGGAGCTTCCCTGGCCCAGTCCCCAGAGCTTTCAACACAGGCAGGGCCTGGGGCCCAGGCAGAAGCCTGCACTGCCCTCTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab