CircRNA Information

General Information
circRNA Basic Information
CircID chr19:12665483|12665772
Strand +
CircType exon
Host Gene ENSG00000104774.11;
Algorism CIRI2;
Sequence GTGCACCTGCTGCCTCACACACATGATGACGTGGGCTGGCTCAAAACCGTGGACCAGTACTTTTATGGAAGTGAGTAGAGGATGGGGACTGGTCCCTGGGATCCCCATGGTCCCTGTAATCCCTCTGGGTCCTGGACATTAGGGTGGGGCCAGTGCTACCCTAATATCCAGGGTTTGGGCTCCTCTGTCTAGGAATAACCCCCTTGGCTCTGCTGTTCCCTGAGAGCCTTATCCCTGTTATCCACAGTCAAGAATGACATCCAGCACGCCGGTGTGCAGTACATCCTGGA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:12665483|12665772 hsa-miR-198 0 0 1
chr19:12665483|12665772 hsa-miR-214-5p 0 0 1
chr19:12665483|12665772 hsa-miR-214-3p 0 0 1
chr19:12665483|12665772 hsa-miR-217-5p 0 0 1
chr19:12665483|12665772 hsa-miR-217-3p 0 0 1
chr19:12665483|12665772 hsa-miR-384 0 0 1
chr19:12665483|12665772 hsa-miR-193b-5p 0 0 1
chr19:12665483|12665772 hsa-miR-193b-3p 0 0 1
chr19:12665483|12665772 hsa-miR-526b-5p 0 0 1
chr19:12665483|12665772 hsa-miR-526b-3p 0 0 1
chr19:12665483|12665772 hsa-miR-587 0 1 1
chr19:12665483|12665772 hsa-miR-591 0 1 1
chr19:12665483|12665772 hsa-miR-598-5p 0 0 1
chr19:12665483|12665772 hsa-miR-598-3p 0 0 1
chr19:12665483|12665772 hsa-miR-616-5p 0 0 1
chr19:12665483|12665772 hsa-miR-616-3p 0 0 1
chr19:12665483|12665772 hsa-miR-662 0 0 1
chr19:12665483|12665772 hsa-miR-665 0 0 1
chr19:12665483|12665772 hsa-miR-922 0 1 1
chr19:12665483|12665772 hsa-miR-943 0 0 1
chr19:12665483|12665772 hsa-miR-1287-5p 0 0 1
chr19:12665483|12665772 hsa-miR-1287-3p 0 0 1
chr19:12665483|12665772 hsa-miR-548k 0 1 1
chr19:12665483|12665772 hsa-miR-1294 0 0 1
chr19:12665483|12665772 hsa-miR-1261 0 0 1
chr19:12665483|12665772 hsa-miR-548n 0 0 1
chr19:12665483|12665772 hsa-miR-1265 0 0 1
chr19:12665483|12665772 hsa-miR-1266-5p 0 0 1
chr19:12665483|12665772 hsa-miR-1266-3p 0 0 1
chr19:12665483|12665772 hsa-miR-1278 0 0 1
chr19:12665483|12665772 hsa-miR-1827 0 1 1
chr19:12665483|12665772 hsa-miR-509-3-5p 0 0 1
chr19:12665483|12665772 hsa-miR-509-5p 0 0 1
chr19:12665483|12665772 hsa-miR-193a-3p 0 1 1
chr19:12665483|12665772 hsa-miR-220a 0 0 1
chr19:12665483|12665772 hsa-miR-1286 1 0 0
chr19:12665483|12665772 hsa-miR-548l 0 1 0
chr19:12665483|12665772 hsa-miR-711 0 1 0
chr19:12665483|12665772 hsa-miR-4316 0 1 0
chr19:12665483|12665772 hsa-miR-4270 1 0 0
chr19:12665483|12665772 hsa-miR-4518 0 1 0
chr19:12665483|12665772 hsa-miR-3972 1 0 0
chr19:12665483|12665772 hsa-miR-4721 1 0 0
chr19:12665483|12665772 hsa-miR-4739 1 0 0
chr19:12665483|12665772 hsa-miR-4752 0 1 0
chr19:12665483|12665772 hsa-miR-5685 0 1 0
chr19:12665483|12665772 hsa-miR-6081 1 1 0
chr19:12665483|12665772 hsa-miR-8064 1 0 0
chr19:12665483|12665772 hsa-miR-8089 1 0 0
chr19:12665483|12665772 hsa-miR-10226 0 1 0
chr19:12665483|12665772 hsa-miR-12119 1 0 0
chr19:12665483|12665772 hsa-miR-12128 1 1 0
chr19:12665483|12665772 hsa-miR-12129 0 1 0
chr19:12665483|12665772 hsa-miR-211-3p 1 1 0
chr19:12665483|12665772 hsa-miR-6857-5p 0 1 0
chr19:12665483|12665772 hsa-miR-6510-5p 1 0 0
chr19:12665483|12665772 hsa-miR-6873-5p 0 1 0
chr19:12665483|12665772 hsa-miR-6867-5p 0 1 0
chr19:12665483|12665772 hsa-miR-1292-5p 1 0 0
chr19:12665483|12665772 hsa-miR-6732-5p 1 0 0
chr19:12665483|12665772 hsa-miR-6798-5p 1 0 0
chr19:12665483|12665772 hsa-miR-6760-5p 1 0 0
chr19:12665483|12665772 hsa-miR-6881-5p 1 0 0
chr19:12665483|12665772 hsa-miR-2467-3p 1 0 0
chr19:12665483|12665772 hsa-miR-5008-5p 1 0 0
chr19:12665483|12665772 hsa-miR-6858-3p 0 1 0
chr19:12665483|12665772 hsa-miR-5088-5p 1 1 0
chr19:12665483|12665772 hsa-miR-4640-5p 1 0 0
chr19:12665483|12665772 hsa-let-7d-5p 0 1 0
chr19:12665483|12665772 hsa-miR-6780a-3p 0 1 0
chr19:12665483|12665772 hsa-miR-5196-3p 0 1 0
chr19:12665483|12665772 hsa-miR-4661-3p 0 1 0
chr19:12665483|12665772 hsa-miR-4758-3p 0 1 0
chr19:12665483|12665772 hsa-miR-6818-5p 0 1 0
chr19:12665483|12665772 hsa-miR-6883-3p 0 1 0
chr19:12665483|12665772 hsa-miR-6755-5p 0 1 0
chr19:12665483|12665772 hsa-miR-3680-5p 0 1 0
chr19:12665483|12665772 hsa-miR-6752-5p 1 0 0
chr19:12665483|12665772 hsa-miR-6842-5p 1 0 0
chr19:12665483|12665772 hsa-miR-7110-5p 1 0 0
chr19:12665483|12665772 hsa-miR-1249-5p 0 1 0
chr19:12665483|12665772 hsa-miR-6797-5p 1 0 0
chr19:12665483|12665772 hsa-miR-5189-5p 1 0 0
chr19:12665483|12665772 hsa-miR-6780b-5p 1 0 0
chr19:12665483|12665772 hsa-miR-4685-5p 0 1 0
chr19:12665483|12665772 hsa-miR-6738-5p 1 0 0
chr19:12665483|12665772 hsa-miR-939-5p 1 1 0
chr19:12665483|12665772 hsa-miR-7843-5p 1 0 0
chr19:12665483|12665772 hsa-miR-6750-5p 1 1 0
chr19:12665483|12665772 hsa-miR-302a-3p 0 1 0
chr19:12665483|12665772 hsa-miR-302d-3p 0 1 0
chr19:12665483|12665772 hsa-miR-6822-5p 0 1 0
chr19:12665483|12665772 hsa-miR-6837-5p 0 1 0
chr19:12665483|12665772 hsa-miR-6891-3p 0 1 0
chr19:12665483|12665772 hsa-miR-6764-5p 0 1 0
chr19:12665483|12665772 hsa-miR-1912-3p 0 1 0
chr19:12665483|12665772 hsa-miR-302b-3p 0 1 0
chr19:12665483|12665772 hsa-miR-4684-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:12665483|12665772
ORF Type ORF1
Protein Length 36
Nucleotide Length 111
Protein Sequence MGTGPWDPHGPCNPSGSWTLGWGQCYPNIQGLGSSV
Nucleotide Sequence ATGGGGACTGGTCCCTGGGATCCCCATGGTCCCTGTAATCCCTCTGGGTCCTGGACATTAGGGTGGGGCCAGTGCTACCCTAATATCCAGGGTTTGGGCTCCTCTGTCTAG
CircID chr19:12665483|12665772
ORF Type ORF2
Protein Length 39
Nucleotide Length 120
Protein Sequence MMTWAGSKPWTSTFMEVSRGWGLVPGIPMVPVIPLGPGH
Nucleotide Sequence ATGATGACGTGGGCTGGCTCAAAACCGTGGACCAGTACTTTTATGGAAGTGAGTAGAGGATGGGGACTGGTCCCTGGGATCCCCATGGTCCCTGTAATCCCTCTGGGTCCTGGACATTAG
CircID chr19:12665483|12665772
ORF Type ORF3
Protein Length 31
Nucleotide Length 96
Protein Sequence MYCTPACWMSFLTVDNRDKALREQQSQGGYS
Nucleotide Sequence ATGTACTGCACACCGGCGTGCTGGATGTCATTCTTGACTGTGGATAACAGGGATAAGGCTCTCAGGGAACAGCAGAGCCAAGGGGGTTATTCCTAG
CircID chr19:12665483|12665772
ORF Type ORF4
Protein Length 28
Nucleotide Length 87
Protein Sequence MWITGIRLSGNSRAKGVIPRQRSPNPGY
Nucleotide Sequence CTGTGGATAACAGGGATAAGGCTCTCAGGGAACAGCAGAGCCAAGGGGGTTATTCCTAGACAGAGGAGCCCAAACCCTGGATATTAG
CircID chr19:12665483|12665772
ORF Type ORF5
Protein Length 32
Nucleotide Length 99
Protein Sequence MSRTQRDYRDHGDPRDQSPSSTHFHKSTGPRF
Nucleotide Sequence ATGTCCAGGACCCAGAGGGATTACAGGGACCATGGGGATCCCAGGGACCAGTCCCCATCCTCTACTCACTTCCATAAAAGTACTGGTCCACGGTTTTGA
CircID chr19:12665483|12665772
ORF Type ORF6
Protein Length 36
Nucleotide Length 108
Protein Sequence MGIPGTSPHPLLTSIKVLVHGFEPAHVIMCVRQQVH
Nucleotide Sequence ATGGGGATCCCAGGGACCAGTCCCCATCCTCTACTCACTTCCATAAAAGTACTGGTCCACGGTTTTGAGCCAGCCCACGTCATCATGTGTGTGAGGCAGCAGGTGCAC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab