CircRNA Information

General Information
circRNA Basic Information
CircID chr19:1278868|1279012
Strand -
CircType exon
Host Gene ENSG00000228300.12;
Algorism CIRI2;
Sequence CGCTCATTCCCCTGCTGGCCCCGGGGCTGGTCTCACCCAGTGCCAACCCGAGAGCTCCTTTTGGAACCTGCACAGCCCGCCGACCTGTTGCCACCTGCACCCACCGCTGGACCATGCAGCCTCGCCTCCTGGATGCTGTCCCAGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:1278868|1279012 hsa-miR-96-5p 0 0 1
chr19:1278868|1279012 hsa-miR-96-3p 0 0 1
chr19:1278868|1279012 hsa-miR-214-5p 0 0 1
chr19:1278868|1279012 hsa-miR-214-3p 0 0 1
chr19:1278868|1279012 hsa-miR-657 0 0 1
chr19:1278868|1279012 hsa-miR-1271-5p 0 0 1
chr19:1278868|1279012 hsa-miR-1271-3p 0 0 1
chr19:1278868|1279012 hsa-miR-708-5p 0 0 1
chr19:1278868|1279012 hsa-miR-708-3p 0 0 1
chr19:1278868|1279012 hsa-miR-665 1 1 1
chr19:1278868|1279012 hsa-miR-1262 0 0 1
chr19:1278868|1279012 hsa-miR-769-5p 0 0 1
chr19:1278868|1279012 hsa-miR-485-5p 0 0 1
chr19:1278868|1279012 hsa-miR-28-5p 0 0 1
chr19:1278868|1279012 hsa-miR-1302 0 0 1
chr19:1278868|1279012 hsa-miR-638 1 0 0
chr19:1278868|1279012 hsa-miR-663a 1 0 0
chr19:1278868|1279012 hsa-miR-658 1 0 0
chr19:1278868|1279012 hsa-miR-762 1 0 0
chr19:1278868|1279012 hsa-miR-761 0 1 0
chr19:1278868|1279012 hsa-miR-1469 1 0 0
chr19:1278868|1279012 hsa-miR-4298 1 1 0
chr19:1278868|1279012 hsa-miR-3621 1 0 0
chr19:1278868|1279012 hsa-miR-3665 1 0 0
chr19:1278868|1279012 hsa-miR-1268b 1 0 0
chr19:1278868|1279012 hsa-miR-4449 1 1 0
chr19:1278868|1279012 hsa-miR-4466 1 0 0
chr19:1278868|1279012 hsa-miR-4488 1 0 0
chr19:1278868|1279012 hsa-miR-4489 1 0 0
chr19:1278868|1279012 hsa-miR-4498 1 0 0
chr19:1278868|1279012 hsa-miR-4507 1 0 0
chr19:1278868|1279012 hsa-miR-1587 1 0 0
chr19:1278868|1279012 hsa-miR-4651 1 0 0
chr19:1278868|1279012 hsa-miR-4688 1 0 0
chr19:1278868|1279012 hsa-miR-4710 1 0 0
chr19:1278868|1279012 hsa-miR-4734 1 0 0
chr19:1278868|1279012 hsa-miR-4741 1 0 0
chr19:1278868|1279012 hsa-miR-5090 1 0 0
chr19:1278868|1279012 hsa-miR-6745 1 0 0
chr19:1278868|1279012 hsa-miR-7704 1 0 0
chr19:1278868|1279012 hsa-miR-7974 0 1 0
chr19:1278868|1279012 hsa-miR-8072 1 0 0
chr19:1278868|1279012 hsa-miR-8089 1 0 0
chr19:1278868|1279012 hsa-miR-12115 1 0 0
chr19:1278868|1279012 hsa-miR-211-3p 1 0 0
chr19:1278868|1279012 hsa-miR-128-1-5p 1 0 0
chr19:1278868|1279012 hsa-miR-6765-5p 1 0 0
chr19:1278868|1279012 hsa-miR-125a-3p 1 0 0
chr19:1278868|1279012 hsa-miR-6510-5p 0 1 0
chr19:1278868|1279012 hsa-miR-6728-5p 1 0 0
chr19:1278868|1279012 hsa-miR-1227-5p 1 0 0
chr19:1278868|1279012 hsa-miR-4786-5p 0 1 0
chr19:1278868|1279012 hsa-miR-6089 1 0 0
chr19:1278868|1279012 hsa-miR-6880-5p 1 0 0
chr19:1278868|1279012 hsa-miR-4695-5p 1 0 0
chr19:1278868|1279012 hsa-miR-4722-5p 1 0 0
chr19:1278868|1279012 hsa-miR-6741-5p 1 1 0
chr19:1278868|1279012 hsa-miR-6727-5p 1 0 0
chr19:1278868|1279012 hsa-miR-6759-5p 1 0 0
chr19:1278868|1279012 hsa-miR-1178-5p 1 0 0
chr19:1278868|1279012 hsa-miR-5589-5p 1 0 0
chr19:1278868|1279012 hsa-miR-6776-5p 1 0 0
chr19:1278868|1279012 hsa-miR-1292-5p 1 0 0
chr19:1278868|1279012 hsa-miR-6772-5p 1 0 0
chr19:1278868|1279012 hsa-miR-6793-5p 1 0 0
chr19:1278868|1279012 hsa-miR-6798-5p 1 1 0
chr19:1278868|1279012 hsa-miR-6782-5p 1 0 0
chr19:1278868|1279012 hsa-miR-6821-5p 1 0 0
chr19:1278868|1279012 hsa-miR-6786-5p 1 1 0
chr19:1278868|1279012 hsa-miR-3944-3p 1 0 0
chr19:1278868|1279012 hsa-miR-6784-5p 1 0 0
chr19:1278868|1279012 hsa-miR-1908-5p 1 0 0
chr19:1278868|1279012 hsa-miR-1228-5p 1 0 0
chr19:1278868|1279012 hsa-miR-6800-5p 1 0 0
chr19:1278868|1279012 hsa-miR-4707-5p 1 0 0
chr19:1278868|1279012 hsa-miR-654-5p 1 0 0
chr19:1278868|1279012 hsa-miR-10400-5p 1 0 0
chr19:1278868|1279012 hsa-miR-6769b-5p 1 1 0
chr19:1278868|1279012 hsa-miR-6812-5p 1 0 0
chr19:1278868|1279012 hsa-miR-6816-5p 1 0 0
chr19:1278868|1279012 hsa-miR-6865-5p 1 1 0
chr19:1278868|1279012 hsa-miR-6775-5p 1 0 0
chr19:1278868|1279012 hsa-miR-6726-5p 1 0 0
chr19:1278868|1279012 hsa-miR-6737-5p 1 0 0
chr19:1278868|1279012 hsa-miR-6743-5p 1 0 0
chr19:1278868|1279012 hsa-miR-6756-5p 1 1 0
chr19:1278868|1279012 hsa-miR-6803-5p 1 0 0
chr19:1278868|1279012 hsa-miR-6815-5p 1 0 0
chr19:1278868|1279012 hsa-miR-6851-5p 1 0 0
chr19:1278868|1279012 hsa-miR-6751-5p 1 0 0
chr19:1278868|1279012 hsa-miR-3620-5p 1 0 0
chr19:1278868|1279012 hsa-miR-10396b-5p 1 0 0
chr19:1278868|1279012 hsa-miR-1237-5p 1 0 0
chr19:1278868|1279012 hsa-miR-328-5p 1 0 0
chr19:1278868|1279012 hsa-miR-4632-5p 1 0 0
chr19:1278868|1279012 hsa-miR-4649-5p 1 0 0
chr19:1278868|1279012 hsa-miR-4701-3p 1 0 0
chr19:1278868|1279012 hsa-miR-4726-5p 0 1 0
chr19:1278868|1279012 hsa-miR-6729-5p 1 0 0
chr19:1278868|1279012 hsa-miR-675-5p 1 0 0
chr19:1278868|1279012 hsa-miR-6845-5p 1 1 0
chr19:1278868|1279012 hsa-miR-6511b-5p 1 0 0
chr19:1278868|1279012 hsa-miR-10396a-3p 0 1 0
chr19:1278868|1279012 hsa-miR-10396b-3p 0 1 0
chr19:1278868|1279012 hsa-miR-6736-5p 1 1 0
chr19:1278868|1279012 hsa-miR-6791-5p 1 1 0
chr19:1278868|1279012 hsa-miR-6762-5p 1 0 0
chr19:1278868|1279012 hsa-miR-6837-5p 1 1 0
chr19:1278868|1279012 hsa-miR-3619-5p 1 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr19:1278868|1279012
ORF Type ORF1
Protein Length 28
Nucleotide Length 84
Protein Sequence MEPAQPADLLPPAPTAGPCSLASWMLSQ
Nucleotide Sequence TTGGAACCTGCACAGCCCGCCGACCTGTTGCCACCTGCACCCACCGCTGGACCATGCAGCCTCGCCTCCTGGATGCTGTCCCAG
CircID chr19:1278868|1279012
ORF Type ORF2
Protein Length 26
Nucleotide Length 78
Protein Sequence MHSPPTCCHLHPPLDHAASPPGCCPS
Nucleotide Sequence CTGCACAGCCCGCCGACCTGTTGCCACCTGCACCCACCGCTGGACCATGCAGCCTCGCCTCCTGGATGCTGTCCCAGC
CircID chr19:1278868|1279012
ORF Type ORF3
Protein Length 44
Nucleotide Length 132
Protein Sequence MLAPGLVSPSANPRAPFGTCTARRPVATCTHRWTMQPRLLDAVP
Nucleotide Sequence CTGCTGGCCCCGGGGCTGGTCTCACCCAGTGCCAACCCGAGAGCTCCTTTTGGAACCTGCACAGCCCGCCGACCTGTTGCCACCTGCACCCACCGCTGGACCATGCAGCCTCGCCTCCTGGATGCTGTCCCA
CircID chr19:1278868|1279012
ORF Type ORF4
Protein Length 38
Nucleotide Length 114
Protein Sequence MVQRWVQVATGRRAVQVPKGALGLALGETSPGASRGMS
Nucleotide Sequence ATGGTCCAGCGGTGGGTGCAGGTGGCAACAGGTCGGCGGGCTGTGCAGGTTCCAAAAGGAGCTCTCGGGTTGGCACTGGGTGAGACCAGCCCCGGGGCCAGCAGGGGAATGAGC
CircID chr19:1278868|1279012
ORF Type ORF5
Protein Length 46
Nucleotide Length 141
Protein Sequence LGQHPGGEAAWSSGGCRWQQVGGLCRFQKELSGWHWVRPAPGPAGE
Nucleotide Sequence CTGGGACAGCATCCAGGAGGCGAGGCTGCATGGTCCAGCGGTGGGTGCAGGTGGCAACAGGTCGGCGGGCTGTGCAGGTTCCAAAAGGAGCTCTCGGGTTGGCACTGGGTGAGACCAGCCCCGGGGCCAGCAGGGGAATGA
CircID chr19:1278868|1279012
ORF Type ORF6
Protein Length 28
Nucleotide Length 87
Protein Sequence MHGPAVGAGGNRSAGCAGSKRSSRVGTG
Nucleotide Sequence CTGCATGGTCCAGCGGTGGGTGCAGGTGGCAACAGGTCGGCGGGCTGTGCAGGTTCCAAAAGGAGCTCTCGGGTTGGCACTGGGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab