CircRNA Information

General Information
circRNA Basic Information
CircID chr19:12878561|12878783
Strand +
CircType exon
Host Gene ENSG00000105612.7;
Algorism CIRI2;
Sequence CTAACTTCCCTCCACCGGCCTCCTCTGCTGCATACAGCTGGCCTCATAGCGCCTGTACCTACGGGCAGACCCTGCTCTGTGTGTCTTTTCCCTTCGCTCAGTTCTCGAAGATGGGTAAGTCGAGTCAGGGACACAGGATGAGTCCTGGGTTTACTGACCAGAACCTGGAACGATCTTGCATTTCCTCCTCCCCTTGTCCTCCAGGCAAGCAGCTGACCTACAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:12878561|12878783 hsa-miR-107 0 0 1
chr19:12878561|12878783 hsa-miR-146a-5p 0 0 1
chr19:12878561|12878783 hsa-miR-146a-3p 0 0 1
chr19:12878561|12878783 hsa-miR-345-5p 0 0 1
chr19:12878561|12878783 hsa-miR-345-3p 0 0 1
chr19:12878561|12878783 hsa-miR-346 0 1 1
chr19:12878561|12878783 hsa-miR-661 0 0 1
chr19:12878561|12878783 hsa-miR-660-5p 0 0 1
chr19:12878561|12878783 hsa-miR-660-3p 0 0 1
chr19:12878561|12878783 hsa-miR-765 1 0 1
chr19:12878561|12878783 hsa-miR-922 0 0 1
chr19:12878561|12878783 hsa-miR-1182 0 0 1
chr19:12878561|12878783 hsa-miR-1207-3p 0 0 1
chr19:12878561|12878783 hsa-miR-324-3p 0 0 1
chr19:12878561|12878783 hsa-miR-125a-5p 0 0 1
chr19:12878561|12878783 hsa-miR-146b-5p 0 1 1
chr19:12878561|12878783 hsa-miR-125b 0 0 1
chr19:12878561|12878783 hsa-miR-103 0 0 1
chr19:12878561|12878783 hsa-miR-1254 0 0 1
chr19:12878561|12878783 hsa-miR-611 1 0 0
chr19:12878561|12878783 hsa-miR-637 1 0 0
chr19:12878561|12878783 hsa-miR-658 1 1 0
chr19:12878561|12878783 hsa-miR-1183 1 0 0
chr19:12878561|12878783 hsa-miR-1202 1 0 0
chr19:12878561|12878783 hsa-miR-2110 1 0 0
chr19:12878561|12878783 hsa-miR-2278 0 1 0
chr19:12878561|12878783 hsa-miR-3125 1 0 0
chr19:12878561|12878783 hsa-miR-3131 1 1 0
chr19:12878561|12878783 hsa-miR-3153 1 0 0
chr19:12878561|12878783 hsa-miR-3154 1 0 0
chr19:12878561|12878783 hsa-miR-4298 1 0 0
chr19:12878561|12878783 hsa-miR-4316 0 1 0
chr19:12878561|12878783 hsa-miR-4327 1 0 0
chr19:12878561|12878783 hsa-miR-3937 1 0 0
chr19:12878561|12878783 hsa-miR-4458 1 0 0
chr19:12878561|12878783 hsa-miR-4481 1 0 0
chr19:12878561|12878783 hsa-miR-4499 1 0 0
chr19:12878561|12878783 hsa-miR-4689 0 1 0
chr19:12878561|12878783 hsa-miR-4706 1 0 0
chr19:12878561|12878783 hsa-miR-4739 1 0 0
chr19:12878561|12878783 hsa-miR-4741 1 0 0
chr19:12878561|12878783 hsa-miR-4779 0 1 0
chr19:12878561|12878783 hsa-miR-5093 0 1 0
chr19:12878561|12878783 hsa-miR-5698 1 0 0
chr19:12878561|12878783 hsa-miR-5787 1 0 0
chr19:12878561|12878783 hsa-miR-6081 1 0 0
chr19:12878561|12878783 hsa-miR-6124 1 1 0
chr19:12878561|12878783 hsa-miR-6133 1 0 0
chr19:12878561|12878783 hsa-miR-8059 1 0 0
chr19:12878561|12878783 hsa-miR-12124 0 1 0
chr19:12878561|12878783 hsa-miR-150-3p 1 0 0
chr19:12878561|12878783 hsa-miR-6840-3p 0 1 0
chr19:12878561|12878783 hsa-miR-6765-5p 1 0 0
chr19:12878561|12878783 hsa-miR-7106-5p 1 1 0
chr19:12878561|12878783 hsa-miR-6825-5p 1 1 0
chr19:12878561|12878783 hsa-miR-6894-5p 1 0 0
chr19:12878561|12878783 hsa-miR-6510-5p 1 1 0
chr19:12878561|12878783 hsa-miR-766-5p 1 1 0
chr19:12878561|12878783 hsa-miR-6089 1 1 0
chr19:12878561|12878783 hsa-miR-6880-5p 1 1 0
chr19:12878561|12878783 hsa-miR-7847-3p 1 1 0
chr19:12878561|12878783 hsa-miR-4695-5p 1 1 0
chr19:12878561|12878783 hsa-miR-6746-5p 1 0 0
chr19:12878561|12878783 hsa-miR-7154-3p 1 1 0
chr19:12878561|12878783 hsa-miR-6820-5p 1 0 0
chr19:12878561|12878783 hsa-miR-6721-5p 0 1 0
chr19:12878561|12878783 hsa-miR-1178-5p 1 0 0
chr19:12878561|12878783 hsa-miR-6805-5p 1 0 0
chr19:12878561|12878783 hsa-miR-6798-5p 1 0 0
chr19:12878561|12878783 hsa-miR-6760-5p 1 1 0
chr19:12878561|12878783 hsa-miR-6881-5p 1 0 0
chr19:12878561|12878783 hsa-miR-6782-5p 1 0 0
chr19:12878561|12878783 hsa-miR-3150b-3p 1 0 0
chr19:12878561|12878783 hsa-miR-5008-5p 1 0 0
chr19:12878561|12878783 hsa-miR-7109-5p 1 0 0
chr19:12878561|12878783 hsa-miR-1226-5p 1 0 0
chr19:12878561|12878783 hsa-miR-4640-5p 1 0 0
chr19:12878561|12878783 hsa-miR-885-3p 1 0 0
chr19:12878561|12878783 hsa-miR-6771-5p 1 0 0
chr19:12878561|12878783 hsa-miR-4690-5p 1 0 0
chr19:12878561|12878783 hsa-miR-877-5p 1 0 0
chr19:12878561|12878783 hsa-miR-6847-5p 1 1 0
chr19:12878561|12878783 hsa-miR-149-3p 1 0 0
chr19:12878561|12878783 hsa-miR-6824-5p 1 0 0
chr19:12878561|12878783 hsa-miR-6864-5p 1 1 0
chr19:12878561|12878783 hsa-miR-664b-5p 1 0 0
chr19:12878561|12878783 hsa-miR-7846-3p 1 0 0
chr19:12878561|12878783 hsa-miR-1225-5p 0 1 0
chr19:12878561|12878783 hsa-miR-4638-5p 1 0 0
chr19:12878561|12878783 hsa-miR-4732-3p 0 1 0
chr19:12878561|12878783 hsa-miR-6801-5p 1 0 0
chr19:12878561|12878783 hsa-miR-6501-3p 0 1 0
chr19:12878561|12878783 hsa-miR-5004-5p 0 1 0
chr19:12878561|12878783 hsa-miR-4763-3p 1 0 0
chr19:12878561|12878783 hsa-miR-6778-5p 1 0 0
chr19:12878561|12878783 hsa-miR-6870-5p 1 0 0
chr19:12878561|12878783 hsa-miR-1343-5p 1 0 0
chr19:12878561|12878783 hsa-miR-6851-5p 1 0 0
chr19:12878561|12878783 hsa-miR-11181-3p 1 1 0
chr19:12878561|12878783 hsa-miR-1249-5p 1 1 0
chr19:12878561|12878783 hsa-miR-6722-3p 1 0 0
chr19:12878561|12878783 hsa-miR-6797-5p 1 1 0
chr19:12878561|12878783 hsa-miR-7111-5p 1 1 0
chr19:12878561|12878783 hsa-miR-4728-5p 1 0 0
chr19:12878561|12878783 hsa-miR-5196-5p 1 0 0
chr19:12878561|12878783 hsa-miR-10526-3p 1 0 0
chr19:12878561|12878783 hsa-miR-1237-5p 1 0 0
chr19:12878561|12878783 hsa-miR-328-5p 1 0 0
chr19:12878561|12878783 hsa-miR-4632-5p 1 0 0
chr19:12878561|12878783 hsa-miR-4726-5p 1 0 0
chr19:12878561|12878783 hsa-miR-6738-5p 1 0 0
chr19:12878561|12878783 hsa-miR-6794-5p 1 0 0
chr19:12878561|12878783 hsa-miR-6795-5p 1 0 0
chr19:12878561|12878783 hsa-miR-6858-5p 1 1 0
chr19:12878561|12878783 hsa-miR-6887-5p 1 0 0
chr19:12878561|12878783 hsa-miR-6831-5p 1 0 0
chr19:12878561|12878783 hsa-miR-6845-5p 1 0 0
chr19:12878561|12878783 hsa-miR-939-5p 1 0 0
chr19:12878561|12878783 hsa-miR-1914-3p 1 0 0
chr19:12878561|12878783 hsa-miR-3116 0 1 0
chr19:12878561|12878783 hsa-miR-7151-3p 0 1 0
chr19:12878561|12878783 hsa-miR-3679-5p 1 0 0
chr19:12878561|12878783 hsa-miR-4747-5p 1 0 0
chr19:12878561|12878783 hsa-miR-6785-5p 1 0 0
chr19:12878561|12878783 hsa-miR-6791-5p 1 0 0
chr19:12878561|12878783 hsa-miR-3619-5p 1 1 0
chr19:12878561|12878783 hsa-miR-6733-5p 1 1 0
chr19:12878561|12878783 hsa-miR-7153-5p 0 1 0
chr19:12878561|12878783 hsa-miR-3117-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr19:12878561|12878783
ORF Type ORF1
Protein Length 38
Nucleotide Length 117
Protein Sequence MLHTAGLIAPVPTGRPCSVCLFPSLSSRRWVSRVRDTG
Nucleotide Sequence CTGCTGCATACAGCTGGCCTCATAGCGCCTGTACCTACGGGCAGACCCTGCTCTGTGTGTCTTTTCCCTTCGCTCAGTTCTCGAAGATGGGTAAGTCGAGTCAGGGACACAGGATGA
CircID chr19:12878561|12878783
ORF Type ORF2
Protein Length 50
Nucleotide Length 150
Protein Sequence MLCVSFPFAQFSKMGKSSQGHRMSPGFTDQNLERSCISSSPCPPGKQLTY
Nucleotide Sequence CTGCTCTGTGTGTCTTTTCCCTTCGCTCAGTTCTCGAAGATGGGTAAGTCGAGTCAGGGACACAGGATGAGTCCTGGGTTTACTGACCAGAACCTGGAACGATCTTGCATTTCCTCCTCCCCTTGTCCTCCAGGCAAGCAGCTGACCTAC
CircID chr19:12878561|12878783
ORF Type ORF3
Protein Length 27
Nucleotide Length 84
Protein Sequence MPGGQGEEEMQDRSRFWSVNPGLILCP
Nucleotide Sequence TTGCCTGGAGGACAAGGGGAGGAGGAAATGCAAGATCGTTCCAGGTTCTGGTCAGTAAACCCAGGACTCATCCTGTGTCCCTGA
CircID chr19:12878561|12878783
ORF Type ORF4
Protein Length 70
Nucleotide Length 210
Protein Sequence MLAWRTRGGGNARSFQVLVSKPRTHPVSLTRLTHLRELSEGKRHTEQGLPVGTGAMRPAVCSRGGRWREV
Nucleotide Sequence CTGCTTGCCTGGAGGACAAGGGGAGGAGGAAATGCAAGATCGTTCCAGGTTCTGGTCAGTAAACCCAGGACTCATCCTGTGTCCCTGACTCGACTTACCCATCTTCGAGAACTGAGCGAAGGGAAAAGACACACAGAGCAGGGTCTGCCCGTAGGTACAGGCGCTATGAGGCCAGCTGTATGCAGCAGAGGAGGCCGGTGGAGGGAAGTT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab