CircRNA Information

General Information
circRNA Basic Information
CircID chr19:12922622|12922834
Strand +
CircType exon
Host Gene ENSG00000179115.9;
Algorism CIRI2;
Sequence AAGGTGAACCTGCAGATGGTGTATGACAGTCCCCTGTGCCGCCTGGATGCCGAGCCGAGGCCCCCTCCCACACAGGAGGCTGCGTGACATGGGCCACTCTAGGACAGGTCATCCTCCCCGAGTCCCTGCTGCTGCGCTCCTTTGCATCCCTGGCCAGTGACCTTGTATTTATGAGGCCTCTGTGAGGCCAGCCCCCACCTTCCTCTTTCCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:12922622|12922834 hsa-miR-15a-5p 0 0 1
chr19:12922622|12922834 hsa-miR-15a-3p 0 0 1
chr19:12922622|12922834 hsa-miR-214-5p 0 0 1
chr19:12922622|12922834 hsa-miR-214-3p 0 0 1
chr19:12922622|12922834 hsa-miR-15b-5p 0 0 1
chr19:12922622|12922834 hsa-miR-15b-3p 0 0 1
chr19:12922622|12922834 hsa-miR-195-5p 0 0 1
chr19:12922622|12922834 hsa-miR-195-3p 0 0 1
chr19:12922622|12922834 hsa-miR-381-5p 0 0 1
chr19:12922622|12922834 hsa-miR-381-3p 0 0 1
chr19:12922622|12922834 hsa-miR-424-5p 0 0 1
chr19:12922622|12922834 hsa-miR-424-3p 0 0 1
chr19:12922622|12922834 hsa-miR-193b-5p 0 0 1
chr19:12922622|12922834 hsa-miR-193b-3p 0 0 1
chr19:12922622|12922834 hsa-miR-497-5p 0 0 1
chr19:12922622|12922834 hsa-miR-497-3p 0 0 1
chr19:12922622|12922834 hsa-miR-527 0 0 1
chr19:12922622|12922834 hsa-miR-583 0 1 1
chr19:12922622|12922834 hsa-miR-624-5p 0 0 1
chr19:12922622|12922834 hsa-miR-624-3p 0 0 1
chr19:12922622|12922834 hsa-miR-631 0 0 1
chr19:12922622|12922834 hsa-miR-657 0 0 1
chr19:12922622|12922834 hsa-miR-300 0 0 1
chr19:12922622|12922834 hsa-miR-663b 0 1 1
chr19:12922622|12922834 hsa-miR-1205 0 1 1
chr19:12922622|12922834 hsa-miR-542-5p 1 0 1
chr19:12922622|12922834 hsa-miR-1184 0 0 1
chr19:12922622|12922834 hsa-miR-485-3p 0 0 1
chr19:12922622|12922834 hsa-miR-518a-5p 0 0 1
chr19:12922622|12922834 hsa-miR-193a-3p 0 0 1
chr19:12922622|12922834 hsa-miR-16 0 0 1
chr19:12922622|12922834 hsa-miR-220c 0 0 1
chr19:12922622|12922834 hsa-miR-644 0 0 1
chr19:12922622|12922834 hsa-miR-147 0 0 1
chr19:12922622|12922834 hsa-miR-638 1 0 0
chr19:12922622|12922834 hsa-miR-298 1 0 0
chr19:12922622|12922834 hsa-miR-2861 1 0 0
chr19:12922622|12922834 hsa-miR-3125 0 1 0
chr19:12922622|12922834 hsa-miR-3153 0 1 0
chr19:12922622|12922834 hsa-miR-3197 1 0 0
chr19:12922622|12922834 hsa-miR-4298 1 0 0
chr19:12922622|12922834 hsa-miR-4270 1 0 0
chr19:12922622|12922834 hsa-miR-4271 1 1 0
chr19:12922622|12922834 hsa-miR-3916 1 1 0
chr19:12922622|12922834 hsa-miR-4447 0 1 0
chr19:12922622|12922834 hsa-miR-4488 1 0 0
chr19:12922622|12922834 hsa-miR-4492 0 1 0
chr19:12922622|12922834 hsa-miR-4498 0 1 0
chr19:12922622|12922834 hsa-miR-4518 1 0 0
chr19:12922622|12922834 hsa-miR-3974 0 1 0
chr19:12922622|12922834 hsa-miR-4641 0 1 0
chr19:12922622|12922834 hsa-miR-4654 1 0 0
chr19:12922622|12922834 hsa-miR-4674 1 0 0
chr19:12922622|12922834 hsa-miR-4706 1 0 0
chr19:12922622|12922834 hsa-miR-4739 1 0 0
chr19:12922622|12922834 hsa-miR-5705 1 0 0
chr19:12922622|12922834 hsa-miR-5739 1 0 0
chr19:12922622|12922834 hsa-miR-6085 1 1 0
chr19:12922622|12922834 hsa-miR-6088 1 0 0
chr19:12922622|12922834 hsa-miR-6090 1 0 0
chr19:12922622|12922834 hsa-miR-6124 1 0 0
chr19:12922622|12922834 hsa-miR-6165 1 0 0
chr19:12922622|12922834 hsa-miR-6860 1 0 0
chr19:12922622|12922834 hsa-miR-8052 0 1 0
chr19:12922622|12922834 hsa-miR-8085 1 1 0
chr19:12922622|12922834 hsa-miR-12115 1 0 0
chr19:12922622|12922834 hsa-miR-12120 1 0 0
chr19:12922622|12922834 hsa-miR-12126 1 1 0
chr19:12922622|12922834 hsa-miR-12128 1 0 0
chr19:12922622|12922834 hsa-miR-211-3p 1 1 0
chr19:12922622|12922834 hsa-miR-135a-3p 1 0 0
chr19:12922622|12922834 hsa-miR-4433b-3p 1 0 0
chr19:12922622|12922834 hsa-miR-92a-2-5p 0 1 0
chr19:12922622|12922834 hsa-miR-504-3p 1 1 0
chr19:12922622|12922834 hsa-miR-6825-5p 1 0 0
chr19:12922622|12922834 hsa-miR-6894-5p 1 0 0
chr19:12922622|12922834 hsa-miR-6799-5p 1 0 0
chr19:12922622|12922834 hsa-miR-6510-5p 0 1 0
chr19:12922622|12922834 hsa-miR-6728-5p 1 0 0
chr19:12922622|12922834 hsa-miR-766-5p 1 1 0
chr19:12922622|12922834 hsa-miR-6089 1 0 0
chr19:12922622|12922834 hsa-miR-6757-5p 0 1 0
chr19:12922622|12922834 hsa-miR-3677-5p 0 1 0
chr19:12922622|12922834 hsa-miR-3187-3p 1 0 0
chr19:12922622|12922834 hsa-miR-4655-5p 1 0 0
chr19:12922622|12922834 hsa-miR-7845-5p 1 0 0
chr19:12922622|12922834 hsa-miR-3180-3p 1 0 0
chr19:12922622|12922834 hsa-miR-185-3p 1 1 0
chr19:12922622|12922834 hsa-miR-6732-5p 1 0 0
chr19:12922622|12922834 hsa-miR-6805-5p 1 1 0
chr19:12922622|12922834 hsa-miR-2467-3p 1 0 0
chr19:12922622|12922834 hsa-miR-6782-5p 1 0 0
chr19:12922622|12922834 hsa-miR-5006-5p 1 0 0
chr19:12922622|12922834 hsa-miR-6786-5p 1 0 0
chr19:12922622|12922834 hsa-miR-1229-5p 1 0 0
chr19:12922622|12922834 hsa-miR-4640-5p 1 0 0
chr19:12922622|12922834 hsa-miR-1228-5p 1 0 0
chr19:12922622|12922834 hsa-miR-92b-5p 1 0 0
chr19:12922622|12922834 hsa-miR-3648 1 0 0
chr19:12922622|12922834 hsa-miR-149-3p 1 0 0
chr19:12922622|12922834 hsa-miR-6824-5p 1 0 0
chr19:12922622|12922834 hsa-miR-6789-5p 1 0 0
chr19:12922622|12922834 hsa-miR-4652-5p 0 1 0
chr19:12922622|12922834 hsa-miR-660-3p 0 1 0
chr19:12922622|12922834 hsa-miR-616-3p 1 0 0
chr19:12922622|12922834 hsa-miR-4638-5p 0 1 0
chr19:12922622|12922834 hsa-miR-676-3p 0 1 0
chr19:12922622|12922834 hsa-miR-1207-5p 1 1 0
chr19:12922622|12922834 hsa-miR-1233-5p 1 1 0
chr19:12922622|12922834 hsa-miR-4763-3p 1 0 0
chr19:12922622|12922834 hsa-miR-6778-5p 1 1 0
chr19:12922622|12922834 hsa-miR-6787-5p 1 0 0
chr19:12922622|12922834 hsa-miR-6865-5p 1 1 0
chr19:12922622|12922834 hsa-miR-1343-5p 1 0 0
chr19:12922622|12922834 hsa-miR-5001-5p 0 1 0
chr19:12922622|12922834 hsa-miR-6726-5p 1 0 0
chr19:12922622|12922834 hsa-miR-6737-5p 1 0 0
chr19:12922622|12922834 hsa-miR-6743-5p 1 0 0
chr19:12922622|12922834 hsa-miR-6752-5p 1 0 0
chr19:12922622|12922834 hsa-miR-6756-5p 1 0 0
chr19:12922622|12922834 hsa-miR-6803-5p 1 0 0
chr19:12922622|12922834 hsa-miR-6815-5p 1 1 0
chr19:12922622|12922834 hsa-miR-6851-5p 1 0 0
chr19:12922622|12922834 hsa-miR-10401-5p 0 1 0
chr19:12922622|12922834 hsa-miR-6722-3p 1 0 0
chr19:12922622|12922834 hsa-miR-6774-5p 1 0 0
chr19:12922622|12922834 hsa-miR-6779-5p 1 1 0
chr19:12922622|12922834 hsa-miR-6808-5p 1 0 0
chr19:12922622|12922834 hsa-miR-7111-5p 1 0 0
chr19:12922622|12922834 hsa-miR-3620-5p 1 0 0
chr19:12922622|12922834 hsa-miR-4728-5p 1 0 0
chr19:12922622|12922834 hsa-miR-5196-5p 1 0 0
chr19:12922622|12922834 hsa-miR-6780b-5p 1 0 0
chr19:12922622|12922834 hsa-miR-1909-3p 1 0 0
chr19:12922622|12922834 hsa-miR-328-5p 1 0 0
chr19:12922622|12922834 hsa-miR-4685-5p 1 0 0
chr19:12922622|12922834 hsa-miR-6738-5p 1 0 0
chr19:12922622|12922834 hsa-miR-6777-5p 1 0 0
chr19:12922622|12922834 hsa-miR-6846-5p 1 1 0
chr19:12922622|12922834 hsa-miR-6848-5p 1 1 0
chr19:12922622|12922834 hsa-miR-6858-5p 1 0 0
chr19:12922622|12922834 hsa-miR-6883-5p 1 0 0
chr19:12922622|12922834 hsa-miR-6889-5p 1 1 0
chr19:12922622|12922834 hsa-miR-939-5p 1 0 0
chr19:12922622|12922834 hsa-miR-365a-5p 1 0 0
chr19:12922622|12922834 hsa-miR-6731-5p 1 0 0
chr19:12922622|12922834 hsa-miR-6739-5p 0 1 0
chr19:12922622|12922834 hsa-miR-3173-3p 1 0 0
chr19:12922622|12922834 hsa-miR-4747-5p 1 0 0
chr19:12922622|12922834 hsa-miR-6766-5p 1 1 0
chr19:12922622|12922834 hsa-miR-6762-5p 1 0 0
chr19:12922622|12922834 hsa-miR-6829-3p 0 1 0
chr19:12922622|12922834 hsa-miR-6837-5p 1 0 0
chr19:12922622|12922834 hsa-miR-6859-5p 0 1 0
chr19:12922622|12922834 hsa-miR-6744-3p 1 0 0
chr19:12922622|12922834 hsa-miR-664a-5p 1 1 0
chr19:12922622|12922834 hsa-miR-6838-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:12922622|12922834
ORF Type ORF1
Protein Length 25
Nucleotide Length 78
Protein Sequence MQMVYDSPLCRLDAEPRPPPTQEAA
Nucleotide Sequence CTGCAGATGGTGTATGACAGTCCCCTGTGCCGCCTGGATGCCGAGCCGAGGCCCCCTCCCACACAGGAGGCTGCGTGA
CircID chr19:12922622|12922834
ORF Type ORF2
Protein Length 45
Nucleotide Length 138
Protein Sequence MTVPCAAWMPSRGPLPHRRLRDMGHSRTGHPPRVPAAALLCIPGQ
Nucleotide Sequence ATGACAGTCCCCTGTGCCGCCTGGATGCCGAGCCGAGGCCCCCTCCCACACAGGAGGCTGCGTGACATGGGCCACTCTAGGACAGGTCATCCTCCCCGAGTCCCTGCTGCTGCGCTCCTTTGCATCCCTGGCCAGTGA
CircID chr19:12922622|12922834
ORF Type ORF3
Protein Length 30
Nucleotide Length 90
Protein Sequence MSRSLLCGRGPRLGIQAAQGTVIHHLQVHL
Nucleotide Sequence ATGTCACGCAGCCTCCTGTGTGGGAGGGGGCCTCGGCTCGGCATCCAGGCGGCACAGGGGACTGTCATACACCATCTGCAGGTTCACCTT
CircID chr19:12922622|12922834
ORF Type ORF4
Protein Length 30
Nucleotide Length 93
Protein Sequence MASQRPHKYKVTGQGCKGAQQQGLGEDDLS
Nucleotide Sequence CTGGCCTCACAGAGGCCTCATAAATACAAGGTCACTGGCCAGGGATGCAAAGGAGCGCAGCAGCAGGGACTCGGGGAGGATGACCTGTCCTAG
CircID chr19:12922622|12922834
ORF Type ORF5
Protein Length 52
Nucleotide Length 156
Protein Sequence MARDAKERSSRDSGRMTCPRVAHVTQPPVWEGASARHPGGTGDCHTPSAGSP
Nucleotide Sequence CTGGCCAGGGATGCAAAGGAGCGCAGCAGCAGGGACTCGGGGAGGATGACCTGTCCTAGAGTGGCCCATGTCACGCAGCCTCCTGTGTGGGAGGGGGCCTCGGCTCGGCATCCAGGCGGCACAGGGGACTGTCATACACCATCTGCAGGTTCACCT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab