CircRNA Information

General Information
circRNA Basic Information
CircID chr19:12928356|12928553
Strand +
CircType exon
Host Gene ENSG00000179115.9;
Algorism CIRI2;
Sequence AGATCTTCCTGGAGATGGGGTGAGCACAGGGCTGGGGGCGGTGCCTGGTGCTTCTGCTGGGTACAGGCAGGGCAGTCAGGCTGTGTCTCCCACCAGGTTCACCGAGATGCCGACTGATAACTTCATTGAGAGCTCCTTCTGGAACTTTGACGCCCTCTTCCAGCCCCAGCAGCACCCAGCCCGTGACCAGCACGACAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:12928356|12928553 hsa-miR-29a-5p 0 0 1
chr19:12928356|12928553 hsa-miR-29a-3p 0 0 1
chr19:12928356|12928553 hsa-miR-29c-5p 0 0 1
chr19:12928356|12928553 hsa-miR-29c-3p 0 0 1
chr19:12928356|12928553 hsa-miR-520g-5p 0 0 1
chr19:12928356|12928553 hsa-miR-520g-3p 0 0 1
chr19:12928356|12928553 hsa-miR-520h 0 0 1
chr19:12928356|12928553 hsa-miR-766-5p 0 0 1
chr19:12928356|12928553 hsa-miR-766-3p 0 0 1
chr19:12928356|12928553 hsa-miR-298 0 1 1
chr19:12928356|12928553 hsa-miR-874-5p 0 0 1
chr19:12928356|12928553 hsa-miR-874-3p 0 0 1
chr19:12928356|12928553 hsa-miR-541-5p 0 0 1
chr19:12928356|12928553 hsa-miR-541-3p 0 0 1
chr19:12928356|12928553 hsa-miR-708-5p 0 0 1
chr19:12928356|12928553 hsa-miR-708-3p 0 0 1
chr19:12928356|12928553 hsa-miR-665 0 0 1
chr19:12928356|12928553 hsa-miR-922 0 1 1
chr19:12928356|12928553 hsa-miR-1178-5p 0 0 1
chr19:12928356|12928553 hsa-miR-1178-3p 0 0 1
chr19:12928356|12928553 hsa-miR-486-5p 0 1 1
chr19:12928356|12928553 hsa-miR-361-5p 0 0 1
chr19:12928356|12928553 hsa-miR-146b-3p 0 1 1
chr19:12928356|12928553 hsa-miR-490-3p 0 0 1
chr19:12928356|12928553 hsa-miR-654-5p 0 0 1
chr19:12928356|12928553 hsa-miR-525-5p 0 0 1
chr19:12928356|12928553 hsa-miR-361-3p 0 1 1
chr19:12928356|12928553 hsa-miR-28-5p 0 1 1
chr19:12928356|12928553 hsa-miR-520a-5p 0 0 1
chr19:12928356|12928553 hsa-miR-7 0 0 1
chr19:12928356|12928553 hsa-miR-138 0 0 1
chr19:12928356|12928553 hsa-miR-29b 0 0 1
chr19:12928356|12928553 hsa-miR-602 1 0 0
chr19:12928356|12928553 hsa-miR-637 1 0 0
chr19:12928356|12928553 hsa-miR-661 1 0 0
chr19:12928356|12928553 hsa-miR-762 1 1 0
chr19:12928356|12928553 hsa-miR-1291 0 1 0
chr19:12928356|12928553 hsa-miR-2861 1 0 0
chr19:12928356|12928553 hsa-miR-3147 1 0 0
chr19:12928356|12928553 hsa-miR-4259 1 0 0
chr19:12928356|12928553 hsa-miR-4269 0 1 0
chr19:12928356|12928553 hsa-miR-4281 1 0 0
chr19:12928356|12928553 hsa-miR-3652 1 1 0
chr19:12928356|12928553 hsa-miR-3655 1 0 0
chr19:12928356|12928553 hsa-miR-3659 1 0 0
chr19:12928356|12928553 hsa-miR-3907 1 0 0
chr19:12928356|12928553 hsa-miR-4430 0 1 0
chr19:12928356|12928553 hsa-miR-4440 1 0 0
chr19:12928356|12928553 hsa-miR-4449 1 0 0
chr19:12928356|12928553 hsa-miR-4492 1 1 0
chr19:12928356|12928553 hsa-miR-4498 1 1 0
chr19:12928356|12928553 hsa-miR-4505 1 0 0
chr19:12928356|12928553 hsa-miR-4507 1 0 0
chr19:12928356|12928553 hsa-miR-4508 1 0 0
chr19:12928356|12928553 hsa-miR-4534 1 0 0
chr19:12928356|12928553 hsa-miR-1587 1 0 0
chr19:12928356|12928553 hsa-miR-4642 1 0 0
chr19:12928356|12928553 hsa-miR-4651 1 0 0
chr19:12928356|12928553 hsa-miR-4656 1 0 0
chr19:12928356|12928553 hsa-miR-4741 1 0 0
chr19:12928356|12928553 hsa-miR-5787 1 1 0
chr19:12928356|12928553 hsa-miR-6085 1 0 0
chr19:12928356|12928553 hsa-miR-6086 1 0 0
chr19:12928356|12928553 hsa-miR-6131 1 1 0
chr19:12928356|12928553 hsa-miR-7706 0 1 0
chr19:12928356|12928553 hsa-miR-8089 1 0 0
chr19:12928356|12928553 hsa-miR-370-3p 1 1 0
chr19:12928356|12928553 hsa-miR-92a-1-5p 1 0 0
chr19:12928356|12928553 hsa-miR-4731-5p 1 0 0
chr19:12928356|12928553 hsa-miR-6747-3p 0 1 0
chr19:12928356|12928553 hsa-miR-125b-1-3p 1 0 0
chr19:12928356|12928553 hsa-miR-6861-5p 1 0 0
chr19:12928356|12928553 hsa-miR-4687-3p 1 0 0
chr19:12928356|12928553 hsa-miR-3692-5p 1 1 0
chr19:12928356|12928553 hsa-miR-139-3p 0 1 0
chr19:12928356|12928553 hsa-miR-6880-5p 1 0 0
chr19:12928356|12928553 hsa-miR-6741-5p 1 1 0
chr19:12928356|12928553 hsa-miR-3187-3p 1 0 0
chr19:12928356|12928553 hsa-miR-5589-5p 1 1 0
chr19:12928356|12928553 hsa-miR-6776-5p 1 1 0
chr19:12928356|12928553 hsa-miR-6849-3p 0 1 0
chr19:12928356|12928553 hsa-miR-3663-5p 1 0 0
chr19:12928356|12928553 hsa-miR-6772-5p 1 0 0
chr19:12928356|12928553 hsa-miR-185-3p 1 0 0
chr19:12928356|12928553 hsa-miR-6829-5p 1 0 0
chr19:12928356|12928553 hsa-miR-6874-5p 1 0 0
chr19:12928356|12928553 hsa-miR-4707-3p 1 0 0
chr19:12928356|12928553 hsa-miR-3944-3p 1 1 0
chr19:12928356|12928553 hsa-miR-6784-5p 1 0 0
chr19:12928356|12928553 hsa-miR-30c-2-3p 0 1 0
chr19:12928356|12928553 hsa-miR-296-3p 1 0 0
chr19:12928356|12928553 hsa-miR-4783-5p 1 0 0
chr19:12928356|12928553 hsa-miR-4446-3p 1 0 0
chr19:12928356|12928553 hsa-miR-6781-5p 1 0 0
chr19:12928356|12928553 hsa-miR-6870-3p 1 1 0
chr19:12928356|12928553 hsa-miR-1250-5p 1 0 0
chr19:12928356|12928553 hsa-miR-1226-3p 1 1 0
chr19:12928356|12928553 hsa-miR-1911-3p 0 1 0
chr19:12928356|12928553 hsa-miR-1910-5p 0 1 0
chr19:12928356|12928553 hsa-miR-4798-5p 0 1 0
chr19:12928356|12928553 hsa-miR-6856-3p 0 1 0
chr19:12928356|12928553 hsa-miR-1914-5p 1 1 0
chr19:12928356|12928553 hsa-miR-2277-5p 1 0 0
chr19:12928356|12928553 hsa-miR-6802-3p 0 1 0
chr19:12928356|12928553 hsa-miR-3173-5p 0 1 0
chr19:12928356|12928553 hsa-miR-6779-3p 0 1 0
chr19:12928356|12928553 hsa-miR-5002-3p 0 1 0
chr19:12928356|12928553 hsa-miR-1207-5p 1 0 0
chr19:12928356|12928553 hsa-miR-1233-5p 0 1 0
chr19:12928356|12928553 hsa-miR-6769b-5p 1 0 0
chr19:12928356|12928553 hsa-miR-6778-5p 0 1 0
chr19:12928356|12928553 hsa-miR-5001-5p 1 1 0
chr19:12928356|12928553 hsa-miR-6726-5p 1 0 0
chr19:12928356|12928553 hsa-miR-6756-5p 1 0 0
chr19:12928356|12928553 hsa-miR-6803-5p 1 0 0
chr19:12928356|12928553 hsa-miR-6813-5p 1 0 0
chr19:12928356|12928553 hsa-miR-6819-5p 1 0 0
chr19:12928356|12928553 hsa-miR-7107-5p 1 0 0
chr19:12928356|12928553 hsa-miR-6751-5p 1 0 0
chr19:12928356|12928553 hsa-miR-3620-5p 1 1 0
chr19:12928356|12928553 hsa-miR-1909-3p 1 0 0
chr19:12928356|12928553 hsa-miR-4649-5p 1 0 0
chr19:12928356|12928553 hsa-miR-6846-5p 1 0 0
chr19:12928356|12928553 hsa-miR-6848-5p 1 0 0
chr19:12928356|12928553 hsa-miR-3940-5p 1 0 0
chr19:12928356|12928553 hsa-miR-6799-3p 0 1 0
chr19:12928356|12928553 hsa-miR-5008-3p 0 1 0
chr19:12928356|12928553 hsa-miR-6855-5p 1 0 0
chr19:12928356|12928553 hsa-miR-4700-5p 1 0 0
chr19:12928356|12928553 hsa-miR-4667-5p 1 0 0
chr19:12928356|12928553 hsa-miR-6784-3p 1 1 0
chr19:12928356|12928553 hsa-miR-6862-3p 0 1 0
chr19:12928356|12928553 hsa-miR-6805-3p 1 0 0
chr19:12928356|12928553 hsa-miR-6775-3p 0 1 0
chr19:12928356|12928553 hsa-miR-6737-3p 1 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:12928356|12928553
ORF Type ORF1
Protein Length 55
Nucleotide Length 165
Protein Sequence MGAVPGASAGYRQGSQAVSPTRFTEMPTDNFIESSFWNFDALFQPQQHPARDQHD
Nucleotide Sequence CTGGGGGCGGTGCCTGGTGCTTCTGCTGGGTACAGGCAGGGCAGTCAGGCTGTGTCTCCCACCAGGTTCACCGAGATGCCGACTGATAACTTCATTGAGAGCTCCTTCTGGAACTTTGACGCCCTCTTCCAGCCCCAGCAGCACCCAGCCCGTGACCAGCACGAC
CircID chr19:12928356|12928553
ORF Type ORF2
Protein Length 51
Nucleotide Length 153
Protein Sequence MVLLLGTGRAVRLCLPPGSPRCRLITSLRAPSGTLTPSSSPSSTQPVTSTT
Nucleotide Sequence CTGGTGCTTCTGCTGGGTACAGGCAGGGCAGTCAGGCTGTGTCTCCCACCAGGTTCACCGAGATGCCGACTGATAACTTCATTGAGAGCTCCTTCTGGAACTTTGACGCCCTCTTCCAGCCCCAGCAGCACCCAGCCCGTGACCAGCACGACA
CircID chr19:12928356|12928553
ORF Type ORF3
Protein Length 25
Nucleotide Length 75
Protein Sequence MPCLYPAEAPGTAPSPVLTPSPGRS
Nucleotide Sequence CTGCCCTGCCTGTACCCAGCAGAAGCACCAGGCACCGCCCCCAGCCCTGTGCTCACCCCATCTCCAGGAAGATCT
CircID chr19:12928356|12928553
ORF Type ORF4
Protein Length 63
Nucleotide Length 189
Protein Sequence MVTGWVLLGLEEGVKVPEGALNEVISRHLGEPGGRHSLTALPVPSRSTRHRPQPCAHPISRKI
Nucleotide Sequence CTGGTCACGGGCTGGGTGCTGCTGGGGCTGGAAGAGGGCGTCAAAGTTCCAGAAGGAGCTCTCAATGAAGTTATCAGTCGGCATCTCGGTGAACCTGGTGGGAGACACAGCCTGACTGCCCTGCCTGTACCCAGCAGAAGCACCAGGCACCGCCCCCAGCCCTGTGCTCACCCCATCTCCAGGAAGATC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab