CircRNA Information

General Information
circRNA Basic Information
CircID chr19:12938975|12939137
Strand +
CircType exon
Host Gene ENSG00000179218.12;
Algorism CIRI2;
Sequence CCGTCTAAGTGGGGGATTAGAGGGGTAGGTCAGAGCGGCTGTGCTAATCCCCCCCCACACCAAACATCTGCCGAGAGCCACAAGCTGCTGGGGACAGGAAAGGAGATCCCCGACACTCCCCATTCCAACCTCTAGTTTGACACGTCGGGTGCCTTCAGAGATC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:12938975|12939137 hsa-miR-192-5p 0 0 1
chr19:12938975|12939137 hsa-miR-192-3p 0 0 1
chr19:12938975|12939137 hsa-miR-215-5p 0 0 1
chr19:12938975|12939137 hsa-miR-215-3p 0 0 1
chr19:12938975|12939137 hsa-miR-122-5p 0 0 1
chr19:12938975|12939137 hsa-miR-122-3p 0 0 1
chr19:12938975|12939137 hsa-miR-206 0 0 1
chr19:12938975|12939137 hsa-miR-506-5p 0 0 1
chr19:12938975|12939137 hsa-miR-506-3p 0 0 1
chr19:12938975|12939137 hsa-miR-613 0 0 1
chr19:12938975|12939137 hsa-miR-646 0 0 1
chr19:12938975|12939137 hsa-miR-760 1 0 1
chr19:12938975|12939137 hsa-miR-939-5p 0 0 1
chr19:12938975|12939137 hsa-miR-939-3p 0 0 1
chr19:12938975|12939137 hsa-miR-1307-5p 0 0 1
chr19:12938975|12939137 hsa-miR-1307-3p 0 0 1
chr19:12938975|12939137 hsa-miR-491-5p 0 0 1
chr19:12938975|12939137 hsa-miR-542-5p 0 0 1
chr19:12938975|12939137 hsa-miR-361-3p 0 0 1
chr19:12938975|12939137 hsa-miR-483-5p 0 0 1
chr19:12938975|12939137 hsa-miR-124 0 0 1
chr19:12938975|12939137 hsa-miR-1 0 0 1
chr19:12938975|12939137 hsa-miR-612 1 0 0
chr19:12938975|12939137 hsa-miR-623 1 0 0
chr19:12938975|12939137 hsa-miR-762 1 0 0
chr19:12938975|12939137 hsa-miR-1183 1 0 0
chr19:12938975|12939137 hsa-miR-3615 1 0 0
chr19:12938975|12939137 hsa-miR-3665 1 0 0
chr19:12938975|12939137 hsa-miR-4525 1 0 0
chr19:12938975|12939137 hsa-miR-4706 1 0 0
chr19:12938975|12939137 hsa-miR-5194 1 0 0
chr19:12938975|12939137 hsa-miR-5698 1 0 0
chr19:12938975|12939137 hsa-miR-6086 1 0 0
chr19:12938975|12939137 hsa-miR-6860 1 0 0
chr19:12938975|12939137 hsa-miR-8088 1 0 0
chr19:12938975|12939137 hsa-miR-12119 1 0 0
chr19:12938975|12939137 hsa-miR-105-3p 1 0 0
chr19:12938975|12939137 hsa-miR-4433b-3p 1 0 0
chr19:12938975|12939137 hsa-miR-4665-3p 1 0 0
chr19:12938975|12939137 hsa-miR-6861-5p 1 0 0
chr19:12938975|12939137 hsa-miR-6894-5p 1 0 0
chr19:12938975|12939137 hsa-miR-4687-3p 1 0 0
chr19:12938975|12939137 hsa-miR-6799-5p 1 0 0
chr19:12938975|12939137 hsa-miR-6820-5p 1 0 0
chr19:12938975|12939137 hsa-miR-8069 1 0 0
chr19:12938975|12939137 hsa-miR-7108-5p 1 0 0
chr19:12938975|12939137 hsa-miR-6742-5p 1 0 0
chr19:12938975|12939137 hsa-miR-6716-5p 1 0 0
chr19:12938975|12939137 hsa-miR-6810-5p 1 0 0
chr19:12938975|12939137 hsa-miR-1226-5p 1 0 0
chr19:12938975|12939137 hsa-miR-1908-3p 1 0 0
chr19:12938975|12939137 hsa-miR-7161-3p 1 0 0
chr19:12938975|12939137 hsa-miR-4787-5p 1 0 0
chr19:12938975|12939137 hsa-miR-339-5p 1 0 0
chr19:12938975|12939137 hsa-miR-5010-5p 1 0 0
chr19:12938975|12939137 hsa-miR-4707-5p 1 0 0
chr19:12938975|12939137 hsa-miR-6743-3p 1 0 0
chr19:12938975|12939137 hsa-miR-1233-5p 1 0 0
chr19:12938975|12939137 hsa-miR-4763-3p 1 0 0
chr19:12938975|12939137 hsa-miR-6787-5p 1 0 0
chr19:12938975|12939137 hsa-miR-6893-5p 1 0 0
chr19:12938975|12939137 hsa-miR-1343-5p 1 0 0
chr19:12938975|12939137 hsa-miR-6803-5p 1 0 0
chr19:12938975|12939137 hsa-miR-6722-3p 1 0 0
chr19:12938975|12939137 hsa-miR-6763-5p 1 0 0
chr19:12938975|12939137 hsa-miR-4685-3p 1 0 0
chr19:12938975|12939137 hsa-miR-5196-5p 1 0 0
chr19:12938975|12939137 hsa-miR-328-5p 1 0 0
chr19:12938975|12939137 hsa-miR-4745-5p 1 0 0
chr19:12938975|12939137 hsa-miR-6777-5p 1 0 0
chr19:12938975|12939137 hsa-miR-6795-5p 1 0 0
chr19:12938975|12939137 hsa-miR-6889-5p 1 0 0
chr19:12938975|12939137 hsa-miR-3187-5p 1 0 0
chr19:12938975|12939137 hsa-miR-6885-5p 1 0 0
chr19:12938975|12939137 hsa-miR-1238-5p 1 0 0
chr19:12938975|12939137 hsa-miR-10394-5p 1 0 0
chr19:12938975|12939137 hsa-miR-1301-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:12938975|12939137
ORF Type ORF1
Protein Length 32
Nucleotide Length 96
Protein Sequence MPRATSCWGQERRSPTLPIPTSSLTRRVPSEI
Nucleotide Sequence CTGCCGAGAGCCACAAGCTGCTGGGGACAGGAAAGGAGATCCCCGACACTCCCCATTCCAACCTCTAGTTTGACACGTCGGGTGCCTTCAGAGATC
CircID chr19:12938975|12939137
ORF Type ORF2
Protein Length 41
Nucleotide Length 123
Protein Sequence MGSVGDLLSCPQQLVALGRCLVWGGISTAALTYPSNPPLRR
Nucleotide Sequence ATGGGGAGTGTCGGGGATCTCCTTTCCTGTCCCCAGCAGCTTGTGGCTCTCGGCAGATGTTTGGTGTGGGGGGGGATTAGCACAGCCGCTCTGACCTACCCCTCTAATCCCCCACTTAGACGG
CircID chr19:12938975|12939137
ORF Type ORF3
Protein Length 32
Nucleotide Length 99
Protein Sequence MEWGVSGISFPVPSSLWLSADVWCGGGLAQPL
Nucleotide Sequence TTGGAATGGGGAGTGTCGGGGATCTCCTTTCCTGTCCCCAGCAGCTTGTGGCTCTCGGCAGATGTTTGGTGTGGGGGGGGATTAGCACAGCCGCTCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab