CircRNA Information

General Information
circRNA Basic Information
CircID chr19:12940109|12940452
Strand +
CircType exon
Host Gene ENSG00000179218.12;
Algorism CIRI2;
Sequence CTCAGGCTTGGAGTCTGTGGGATCATCGATCTTGGCCCGCTCATCCCAGTCTTCCGGTTTTGAAGCATCAGGATCCTTTATCTTCTTGGGTGGCAGGAAGTCCCAATCGTCTTCCAAGGAGCCGGACTCCACCTGGCTGTTGTCAATCTTCACCTCATAGGTGTTGTCTGGCCGCACAATCAGTGTGTACAGGTGTGTAAACTCATCATCCTGAAGAAGGAAGAAGGTGAGCGGGGGCCACCCCCCAATGAGGCTGACCTCTGAATCTCCCCATGACAGCCATTTGCCACCACCCCCAGGCACACCTTGCAACGGATGTCCTTGTTGATCAGCACGTTCTTGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:12940109|12940452 hsa-miR-31-5p 0 0 1
chr19:12940109|12940452 hsa-miR-31-3p 0 0 1
chr19:12940109|12940452 hsa-miR-210-5p 0 0 1
chr19:12940109|12940452 hsa-miR-210-3p 0 0 1
chr19:12940109|12940452 hsa-miR-577 0 0 1
chr19:12940109|12940452 hsa-miR-603 0 0 1
chr19:12940109|12940452 hsa-miR-608 1 1 1
chr19:12940109|12940452 hsa-miR-617 0 1 1
chr19:12940109|12940452 hsa-miR-637 0 0 1
chr19:12940109|12940452 hsa-miR-661 1 0 1
chr19:12940109|12940452 hsa-miR-1323 0 0 1
chr19:12940109|12940452 hsa-miR-147b-5p 0 0 1
chr19:12940109|12940452 hsa-miR-147b-3p 0 0 1
chr19:12940109|12940452 hsa-miR-939-5p 0 0 1
chr19:12940109|12940452 hsa-miR-939-3p 0 0 1
chr19:12940109|12940452 hsa-miR-1228-5p 0 0 1
chr19:12940109|12940452 hsa-miR-1228-3p 0 0 1
chr19:12940109|12940452 hsa-miR-1237-5p 0 0 1
chr19:12940109|12940452 hsa-miR-1237-3p 0 0 1
chr19:12940109|12940452 hsa-miR-663b 0 1 1
chr19:12940109|12940452 hsa-miR-1293 0 0 1
chr19:12940109|12940452 hsa-miR-1248 0 0 1
chr19:12940109|12940452 hsa-miR-1255a 0 0 1
chr19:12940109|12940452 hsa-miR-548o-3p 0 0 1
chr19:12940109|12940452 hsa-miR-1272 0 0 1
chr19:12940109|12940452 hsa-miR-1275 1 0 1
chr19:12940109|12940452 hsa-miR-548o 0 0 1
chr19:12940109|12940452 hsa-miR-486-5p 0 0 1
chr19:12940109|12940452 hsa-miR-1289 0 0 1
chr19:12940109|12940452 hsa-miR-188-3p 0 0 1
chr19:12940109|12940452 hsa-miR-1302 0 0 1
chr19:12940109|12940452 hsa-miR-508-3p 0 0 1
chr19:12940109|12940452 hsa-miR-362-3p 0 1 1
chr19:12940109|12940452 hsa-miR-550 0 0 1
chr19:12940109|12940452 hsa-miR-1255b 0 0 1
chr19:12940109|12940452 hsa-miR-7 0 0 1
chr19:12940109|12940452 hsa-miR-1308 0 0 1
chr19:12940109|12940452 hsa-miR-1254 0 0 1
chr19:12940109|12940452 hsa-miR-329 0 0 1
chr19:12940109|12940452 hsa-miR-549 0 0 1
chr19:12940109|12940452 hsa-miR-219-5p 0 0 1
chr19:12940109|12940452 hsa-miR-595 1 0 0
chr19:12940109|12940452 hsa-miR-614 1 0 0
chr19:12940109|12940452 hsa-miR-623 1 0 0
chr19:12940109|12940452 hsa-miR-762 1 0 0
chr19:12940109|12940452 hsa-miR-1268a 1 0 0
chr19:12940109|12940452 hsa-miR-2861 1 0 0
chr19:12940109|12940452 hsa-miR-4309 0 1 0
chr19:12940109|12940452 hsa-miR-1268b 1 0 0
chr19:12940109|12940452 hsa-miR-4448 0 1 0
chr19:12940109|12940452 hsa-miR-4462 1 0 0
chr19:12940109|12940452 hsa-miR-4463 1 1 0
chr19:12940109|12940452 hsa-miR-4488 1 0 0
chr19:12940109|12940452 hsa-miR-4651 1 1 0
chr19:12940109|12940452 hsa-miR-4656 1 0 0
chr19:12940109|12940452 hsa-miR-4689 1 0 0
chr19:12940109|12940452 hsa-miR-4706 1 0 0
chr19:12940109|12940452 hsa-miR-4741 1 0 0
chr19:12940109|12940452 hsa-miR-5572 1 0 0
chr19:12940109|12940452 hsa-miR-5787 1 0 0
chr19:12940109|12940452 hsa-miR-8063 0 1 0
chr19:12940109|12940452 hsa-miR-8064 0 1 0
chr19:12940109|12940452 hsa-miR-8080 0 1 0
chr19:12940109|12940452 hsa-miR-8089 1 0 0
chr19:12940109|12940452 hsa-miR-7-5p 0 1 0
chr19:12940109|12940452 hsa-miR-6734-5p 1 0 0
chr19:12940109|12940452 hsa-miR-7155-5p 1 0 0
chr19:12940109|12940452 hsa-miR-6747-5p 1 0 0
chr19:12940109|12940452 hsa-miR-3150a-3p 1 1 0
chr19:12940109|12940452 hsa-miR-6825-5p 1 1 0
chr19:12940109|12940452 hsa-miR-4687-3p 1 0 0
chr19:12940109|12940452 hsa-miR-6799-5p 1 0 0
chr19:12940109|12940452 hsa-miR-6728-5p 0 1 0
chr19:12940109|12940452 hsa-miR-5187-5p 0 1 0
chr19:12940109|12940452 hsa-miR-6757-5p 0 1 0
chr19:12940109|12940452 hsa-miR-6880-5p 1 1 0
chr19:12940109|12940452 hsa-miR-6759-5p 1 0 0
chr19:12940109|12940452 hsa-miR-7108-5p 1 0 0
chr19:12940109|12940452 hsa-miR-6732-5p 1 0 0
chr19:12940109|12940452 hsa-miR-6782-5p 1 0 0
chr19:12940109|12940452 hsa-miR-3194-5p 1 0 0
chr19:12940109|12940452 hsa-miR-6821-5p 1 0 0
chr19:12940109|12940452 hsa-miR-6835-5p 1 0 0
chr19:12940109|12940452 hsa-miR-7109-5p 1 1 0
chr19:12940109|12940452 hsa-miR-889-5p 0 1 0
chr19:12940109|12940452 hsa-miR-4787-5p 1 1 0
chr19:12940109|12940452 hsa-miR-550b-2-5p 0 1 0
chr19:12940109|12940452 hsa-miR-7162-3p 1 0 0
chr19:12940109|12940452 hsa-miR-664b-5p 0 1 0
chr19:12940109|12940452 hsa-miR-4778-3p 0 1 0
chr19:12940109|12940452 hsa-miR-4761-5p 0 1 0
chr19:12940109|12940452 hsa-miR-891a-3p 1 0 0
chr19:12940109|12940452 hsa-miR-328-3p 0 1 0
chr19:12940109|12940452 hsa-miR-1178-3p 0 1 0
chr19:12940109|12940452 hsa-miR-7152-5p 0 1 0
chr19:12940109|12940452 hsa-miR-7159-5p 0 1 0
chr19:12940109|12940452 hsa-miR-6812-5p 1 1 0
chr19:12940109|12940452 hsa-miR-6865-5p 1 0 0
chr19:12940109|12940452 hsa-miR-6870-5p 1 0 0
chr19:12940109|12940452 hsa-miR-1343-5p 1 0 0
chr19:12940109|12940452 hsa-miR-6737-5p 1 0 0
chr19:12940109|12940452 hsa-miR-6752-5p 1 1 0
chr19:12940109|12940452 hsa-miR-6756-5p 1 0 0
chr19:12940109|12940452 hsa-miR-6803-5p 1 1 0
chr19:12940109|12940452 hsa-miR-6819-5p 1 1 0
chr19:12940109|12940452 hsa-miR-6842-5p 1 1 0
chr19:12940109|12940452 hsa-miR-6851-5p 1 0 0
chr19:12940109|12940452 hsa-miR-7110-5p 1 1 0
chr19:12940109|12940452 hsa-miR-6722-3p 1 0 0
chr19:12940109|12940452 hsa-miR-6751-5p 1 1 0
chr19:12940109|12940452 hsa-miR-7111-5p 1 0 0
chr19:12940109|12940452 hsa-miR-3198 0 1 0
chr19:12940109|12940452 hsa-miR-4646-5p 1 0 0
chr19:12940109|12940452 hsa-miR-6766-5p 1 0 0
chr19:12940109|12940452 hsa-miR-6791-5p 1 0 0
chr19:12940109|12940452 hsa-miR-550a-3-5p 0 1 0
chr19:12940109|12940452 hsa-miR-550a-5p 0 1 0
chr19:12940109|12940452 hsa-miR-6727-3p 0 1 0
chr19:12940109|12940452 hsa-miR-6810-3p 0 1 0
chr19:12940109|12940452 hsa-miR-320a-3p 1 0 0
chr19:12940109|12940452 hsa-miR-320b 1 0 0
chr19:12940109|12940452 hsa-miR-323b-5p 0 1 0
chr19:12940109|12940452 hsa-miR-619-5p 1 1 0
chr19:12940109|12940452 hsa-miR-3913-5p 0 1 0
chr19:12940109|12940452 hsa-miR-329-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:12940109|12940452
ORF Type ORF1
Protein Length 43
Nucleotide Length 132
Protein Sequence MAVVNLHLIGVVWPHNQCVQVCKLIILKKEEGERGPPPNEADL
Nucleotide Sequence CTGGCTGTTGTCAATCTTCACCTCATAGGTGTTGTCTGGCCGCACAATCAGTGTGTACAGGTGTGTAAACTCATCATCCTGAAGAAGGAAGAAGGTGAGCGGGGGCCACCCCCCAATGAGGCTGACCTCTGA
CircID chr19:12940109|12940452
ORF Type ORF2
Protein Length 50
Nucleotide Length 153
Protein Sequence MESVGSSILARSSQSSGFEASGSFIFLGGRKSQSSSKEPDSTWLLSIFTS
Nucleotide Sequence TTGGAGTCTGTGGGATCATCGATCTTGGCCCGCTCATCCCAGTCTTCCGGTTTTGAAGCATCAGGATCCTTTATCTTCTTGGGTGGCAGGAAGTCCCAATCGTCTTCCAAGGAGCCGGACTCCACCTGGCTGTTGTCAATCTTCACCTCATAG
CircID chr19:12940109|12940452
ORF Type ORF3
Protein Length 26
Nucleotide Length 81
Protein Sequence MRLTSESPHDSHLPPPPGTPCNGCPC
Nucleotide Sequence ATGAGGCTGACCTCTGAATCTCCCCATGACAGCCATTTGCCACCACCCCCAGGCACACCTTGCAACGGATGTCCTTGTTGA
CircID chr19:12940109|12940452
ORF Type ORF4
Protein Length 61
Nucleotide Length 186
Protein Sequence MWDHRSWPAHPSLPVLKHQDPLSSWVAGSPNRLPRSRTPPGCCQSSPHRCCLAAQSVCTGV
Nucleotide Sequence CTGTGGGATCATCGATCTTGGCCCGCTCATCCCAGTCTTCCGGTTTTGAAGCATCAGGATCCTTTATCTTCTTGGGTGGCAGGAAGTCCCAATCGTCTTCCAAGGAGCCGGACTCCACCTGGCTGTTGTCAATCTTCACCTCATAGGTGTTGTCTGGCCGCACAATCAGTGTGTACAGGTGTGTAA
CircID chr19:12940109|12940452
ORF Type ORF5
Protein Length 28
Nucleotide Length 84
Protein Sequence MNLPMTAICHHPQAHLATDVLVDQHVLA
Nucleotide Sequence CTGAATCTCCCCATGACAGCCATTTGCCACCACCCCCAGGCACACCTTGCAACGGATGTCCTTGTTGATCAGCACGTTCTTGCC
CircID chr19:12940109|12940452
ORF Type ORF6
Protein Length 50
Nucleotide Length 153
Protein Sequence MINKDIRCKVCLGVVANGCHGEIQRSASLGGGPRSPSSFFRMMSLHTCTH
Nucleotide Sequence CTGATCAACAAGGACATCCGTTGCAAGGTGTGCCTGGGGGTGGTGGCAAATGGCTGTCATGGGGAGATTCAGAGGTCAGCCTCATTGGGGGGTGGCCCCCGCTCACCTTCTTCCTTCTTCAGGATGATGAGTTTACACACCTGTACACACTGA
CircID chr19:12940109|12940452
ORF Type ORF7
Protein Length 25
Nucleotide Length 78
Protein Sequence MAVMGRFRGQPHWGVAPAHLLPSSG
Nucleotide Sequence ATGGCTGTCATGGGGAGATTCAGAGGTCAGCCTCATTGGGGGGTGGCCCCCGCTCACCTTCTTCCTTCTTCAGGATGA
CircID chr19:12940109|12940452
ORF Type ORF8
Protein Length 104
Nucleotide Length 312
Protein Sequence MQGVPGGGGKWLSWGDSEVSLIGGWPPLTFFLLQDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPPKKIKDPDASKPEDWDERAKIDDPTDSKPE
Nucleotide Sequence TTGCAAGGTGTGCCTGGGGGTGGTGGCAAATGGCTGTCATGGGGAGATTCAGAGGTCAGCCTCATTGGGGGGTGGCCCCCGCTCACCTTCTTCCTTCTTCAGGATGATGAGTTTACACACCTGTACACACTGATTGTGCGGCCAGACAACACCTATGAGGTGAAGATTGACAACAGCCAGGTGGAGTCCGGCTCCTTGGAAGACGATTGGGACTTCCTGCCACCCAAGAAGATAAAGGATCCTGATGCTTCAAAACCGGAAGACTGGGATGAGCGGGCCAAGATCGATGATCCCACAGACTCCAAGCCTGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab