CircRNA Information

General Information
circRNA Basic Information
CircID chr19:12940300|12940630
Strand +
CircType exon
Host Gene ENSG00000179218.12;
Algorism CIRI2;
Sequence TGGGGGTTCCCACTCTCCGTCCATCTCTTCATCCCAGTCCTCGGGCTTCTTAGCATCAGGGTCAGGGATATGCTCGGGCTTGTCCCAGTCCTGGGGGGTAGATGAAGAGATCAGAGTTGGCCCAGATGTCTTCCACACCCTCCAATGTGGAGAGCAGAGCCCCTGCCCAAACACCAACCTCAGGCTTGGAGTCTGTGGGATCATCGATCTTGGCCCGCTCATCCCAGTCTTCCGGTTTTGAAGCATCAGGATCCTTTATCTTCTTGGGTGGCAGGAAGTCCCAATCGTCTTCCAAGGAGCCGGACTCCACCTGGCTGTTGTCAATCTTCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:12940300|12940630 hsa-miR-184 -11 1 1
chr19:12940300|12940630 hsa-miR-504-5p 0 0 1
chr19:12940300|12940630 hsa-miR-504-3p 0 0 1
chr19:12940300|12940630 hsa-miR-577 -1 0 1
chr19:12940300|12940630 hsa-miR-611 -3 0 1
chr19:12940300|12940630 hsa-miR-612 -25 1 1
chr19:12940300|12940630 hsa-miR-617 -3 1 1
chr19:12940300|12940630 hsa-miR-641 -2 0 1
chr19:12940300|12940630 hsa-miR-1323 -7 0 1
chr19:12940300|12940630 hsa-miR-760 -5 0 1
chr19:12940300|12940630 hsa-miR-1236-5p 0 0 1
chr19:12940300|12940630 hsa-miR-1236-3p 0 0 1
chr19:12940300|12940630 hsa-miR-1255a -7 0 1
chr19:12940300|12940630 hsa-miR-548o-3p 0 0 1
chr19:12940300|12940630 hsa-miR-1292-5p 0 0 1
chr19:12940300|12940630 hsa-miR-1292-3p 0 0 1
chr19:12940300|12940630 hsa-miR-548o 0 0 1
chr19:12940300|12940630 hsa-miR-1289 -8 0 1
chr19:12940300|12940630 hsa-miR-361-3p -8 1 1
chr19:12940300|12940630 hsa-miR-188-5p -7 0 1
chr19:12940300|12940630 hsa-miR-767-3p 0 0 1
chr19:12940300|12940630 hsa-miR-188-3p -11 0 1
chr19:12940300|12940630 hsa-miR-1207-5p -17 0 1
chr19:12940300|12940630 hsa-miR-125a-5p -3 0 1
chr19:12940300|12940630 hsa-miR-1302 -3 0 1
chr19:12940300|12940630 hsa-miR-125b 0 0 1
chr19:12940300|12940630 hsa-miR-1255b 0 0 1
chr19:12940300|12940630 hsa-miR-7 0 0 1
chr19:12940300|12940630 hsa-miR-1285 0 0 1
chr19:12940300|12940630 hsa-miR-768-5p 0 0 1
chr19:12940300|12940630 hsa-miR-549 0 0 1
chr19:12940300|12940630 hsa-miR-762 -21 1 0
chr19:12940300|12940630 hsa-miR-3131 -16 1 0
chr19:12940300|12940630 hsa-miR-544b -12 1 0
chr19:12940300|12940630 hsa-miR-3169 -4 1 0
chr19:12940300|12940630 hsa-miR-4309 -8 1 0
chr19:12940300|12940630 hsa-miR-4448 -8 1 0
chr19:12940300|12940630 hsa-miR-4463 -18 1 0
chr19:12940300|12940630 hsa-miR-4515 -17 1 0
chr19:12940300|12940630 hsa-miR-4657 -10 1 0
chr19:12940300|12940630 hsa-miR-5192 -12 1 0
chr19:12940300|12940630 hsa-miR-6086 -18 1 0
chr19:12940300|12940630 hsa-miR-8063 -8 1 0
chr19:12940300|12940630 hsa-miR-8082 -12 1 0
chr19:12940300|12940630 hsa-miR-7-5p -5 1 0
chr19:12940300|12940630 hsa-miR-6840-3p -9 1 0
chr19:12940300|12940630 hsa-miR-3194-3p -6 1 0
chr19:12940300|12940630 hsa-miR-6728-5p -15 1 0
chr19:12940300|12940630 hsa-miR-8071 -18 1 0
chr19:12940300|12940630 hsa-miR-6833-5p -9 1 0
chr19:12940300|12940630 hsa-miR-5187-5p -15 1 0
chr19:12940300|12940630 hsa-miR-6515-5p -21 1 0
chr19:12940300|12940630 hsa-miR-6757-5p -11 1 0
chr19:12940300|12940630 hsa-miR-6721-5p -22 1 0
chr19:12940300|12940630 hsa-miR-3190-3p -11 1 0
chr19:12940300|12940630 hsa-miR-6728-3p -6 1 0
chr19:12940300|12940630 hsa-miR-4693-3p -2 1 0
chr19:12940300|12940630 hsa-miR-6809-3p -6 1 0
chr19:12940300|12940630 hsa-miR-664b-5p -14 1 0
chr19:12940300|12940630 hsa-miR-4732-3p -7 1 0
chr19:12940300|12940630 hsa-miR-7152-5p -6 1 0
chr19:12940300|12940630 hsa-miR-6798-3p -5 1 0
chr19:12940300|12940630 hsa-miR-6515-3p -21 1 0
chr19:12940300|12940630 hsa-miR-1298-3p -10 1 0
chr19:12940300|12940630 hsa-miR-4639-5p -6 1 0
chr19:12940300|12940630 hsa-miR-4763-3p -24 1 0
chr19:12940300|12940630 hsa-miR-6812-5p -18 1 0
chr19:12940300|12940630 hsa-miR-6813-5p -5 1 0
chr19:12940300|12940630 hsa-miR-6819-5p -21 1 0
chr19:12940300|12940630 hsa-miR-1909-3p -14 1 0
chr19:12940300|12940630 hsa-miR-4745-5p -13 1 0
chr19:12940300|12940630 hsa-miR-6883-5p -10 1 0
chr19:12940300|12940630 hsa-miR-1238-5p -8 1 0
chr19:12940300|12940630 hsa-miR-4769-5p -16 1 0
chr19:12940300|12940630 hsa-miR-3198 -8 1 0
chr19:12940300|12940630 hsa-miR-6785-5p -9 1 0
chr19:12940300|12940630 hsa-miR-6727-3p -8 1 0
chr19:12940300|12940630 hsa-miR-619-5p -13 1 0
chr19:12940300|12940630 hsa-miR-10397-5p -11 1 0
chr19:12940300|12940630 hsa-miR-6506-5p -7 1 0
chr19:12940300|12940630 hsa-miR-3913-5p -11 1 0
chr19:12940300|12940630 hsa-miR-6764-3p -3 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:12940300|12940630
ORF Type ORF1
Protein Length 62
Nucleotide Length 186
Protein Sequence MWRAEPLPKHQPQAWSLWDHRSWPAHPSLPVLKHQDPLSSWVAGSPNRLPRSRTPPGCCQSS
Nucleotide Sequence ATGTGGAGAGCAGAGCCCCTGCCCAAACACCAACCTCAGGCTTGGAGTCTGTGGGATCATCGATCTTGGCCCGCTCATCCCAGTCTTCCGGTTTTGAAGCATCAGGATCCTTTATCTTCTTGGGTGGCAGGAAGTCCCAATCGTCTTCCAAGGAGCCGGACTCCACCTGGCTGTTGTCAATCTTCA
CircID chr19:12940300|12940630
ORF Type ORF2
Protein Length 53
Nucleotide Length 162
Protein Sequence MSQSWGVDEEIRVGPDVFHTLQCGEQSPCPNTNLRLGVCGIIDLGPLIPVFRF
Nucleotide Sequence TTGTCCCAGTCCTGGGGGGTAGATGAAGAGATCAGAGTTGGCCCAGATGTCTTCCACACCCTCCAATGTGGAGAGCAGAGCCCCTGCCCAAACACCAACCTCAGGCTTGGAGTCTGTGGGATCATCGATCTTGGCCCGCTCATCCCAGTCTTCCGGTTTTGA
CircID chr19:12940300|12940630
ORF Type ORF3
Protein Length 76
Nucleotide Length 228
Protein Sequence MKRSELAQMSSTPSNVESRAPAQTPTSGLESVGSSILARSSQSSGFEASGSFIFLGGRKSQSSSKEPDSTWLLSIF
Nucleotide Sequence ATGAAGAGATCAGAGTTGGCCCAGATGTCTTCCACACCCTCCAATGTGGAGAGCAGAGCCCCTGCCCAAACACCAACCTCAGGCTTGGAGTCTGTGGGATCATCGATCTTGGCCCGCTCATCCCAGTCTTCCGGTTTTGAAGCATCAGGATCCTTTATCTTCTTGGGTGGCAGGAAGTCCCAATCGTCTTCCAAGGAGCCGGACTCCACCTGGCTGTTGTCAATCTTC
CircID chr19:12940300|12940630
ORF Type ORF4
Protein Length 77
Nucleotide Length 234
Protein Sequence MEDDWDFLPPKKIKDPDASKPEDWDERAKIDDPTDSKPEVGVWAGALLSTLEGVEDIWANSDLFIYPPGLGQARAYP
Nucleotide Sequence TTGGAAGACGATTGGGACTTCCTGCCACCCAAGAAGATAAAGGATCCTGATGCTTCAAAACCGGAAGACTGGGATGAGCGGGCCAAGATCGATGATCCCACAGACTCCAAGCCTGAGGTTGGTGTTTGGGCAGGGGCTCTGCTCTCCACATTGGAGGGTGTGGAAGACATCTGGGCCAACTCTGATCTCTTCATCTACCCCCCAGGACTGGGACAAGCCCGAGCATATCCCTGA
CircID chr19:12940300|12940630
ORF Type ORF5
Protein Length 83
Nucleotide Length 249
Protein Sequence MMLQNRKTGMSGPRSMIPQTPSLRLVFGQGLCSPHWRVWKTSGPTLISSSTPQDWDKPEHIPDPDAKKPEDWDEEMDGEWEPP
Nucleotide Sequence CTGATGCTTCAAAACCGGAAGACTGGGATGAGCGGGCCAAGATCGATGATCCCACAGACTCCAAGCCTGAGGTTGGTGTTTGGGCAGGGGCTCTGCTCTCCACATTGGAGGGTGTGGAAGACATCTGGGCCAACTCTGATCTCTTCATCTACCCCCCAGGACTGGGACAAGCCCGAGCATATCCCTGACCCTGATGCTAAGAAGCCCGAGGACTGGGATGAAGAGATGGACGGAGAGTGGGAACCCCCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab