CircRNA Information

General Information
circRNA Basic Information
CircID chr19:12943812|12944060
Strand -
CircType exon
Host Gene ENSG00000179218.12;
Algorism CIRI2;
Sequence AAGGAGGATGATGAGGACAAAGATGAGGATGAGGAGGATGAGGAGGACAAGGAGGAAGATGAGGAGGAAGATGTCCCCGGCCAGGCCAAGGACGAGCTGTAGAGAGGCCTGCCTCCAGGGCTGGACTGAGGCCTGAGCGCTCCTGCCGCAGAGCTGGCCGCGCCAAATAATGTCTCTGTGAGACTCGAGAACTTTCATTTTTTTCCAGGCTGGTTCGGATTTGGGGTGGATTTTGGTTTTGTTCCCCTC
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:12943812|12944060 hsa-miR-650 0 1 1
chr19:12943812|12944060 hsa-miR-940 0 0 1
chr19:12943812|12944060 hsa-miR-1827 0 0 1
chr19:12943812|12944060 hsa-miR-139-5p 0 0 1
chr19:12943812|12944060 hsa-miR-516a-5p 0 0 1
chr19:12943812|12944060 hsa-miR-875-3p 0 0 1
chr19:12943812|12944060 hsa-miR-455-3p 0 0 1
chr19:12943812|12944060 hsa-miR-342-3p 0 0 1
chr19:12943812|12944060 hsa-miR-1254 0 0 1
chr19:12943812|12944060 hsa-miR-663a 1 0 0
chr19:12943812|12944060 hsa-miR-1469 1 0 0
chr19:12943812|12944060 hsa-miR-3142 0 1 0
chr19:12943812|12944060 hsa-miR-3178 1 0 0
chr19:12943812|12944060 hsa-miR-4267 0 1 0
chr19:12943812|12944060 hsa-miR-4290 1 0 0
chr19:12943812|12944060 hsa-miR-3909 1 0 0
chr19:12943812|12944060 hsa-miR-1268b 1 0 0
chr19:12943812|12944060 hsa-miR-4466 1 0 0
chr19:12943812|12944060 hsa-miR-4479 1 1 0
chr19:12943812|12944060 hsa-miR-5193 1 1 0
chr19:12943812|12944060 hsa-miR-6072 1 1 0
chr19:12943812|12944060 hsa-miR-8072 1 0 0
chr19:12943812|12944060 hsa-miR-6749-3p 1 0 0
chr19:12943812|12944060 hsa-miR-6720-5p 1 1 0
chr19:12943812|12944060 hsa-miR-6881-3p 1 1 0
chr19:12943812|12944060 hsa-miR-6089 1 0 0
chr19:12943812|12944060 hsa-miR-4722-5p 0 1 0
chr19:12943812|12944060 hsa-miR-6875-3p 1 0 0
chr19:12943812|12944060 hsa-miR-6727-5p 1 0 0
chr19:12943812|12944060 hsa-miR-7110-3p 1 0 0
chr19:12943812|12944060 hsa-miR-6845-3p 1 0 0
chr19:12943812|12944060 hsa-miR-6783-5p 0 1 0
chr19:12943812|12944060 hsa-miR-877-3p 1 1 0
chr19:12943812|12944060 hsa-miR-4655-3p 1 0 0
chr19:12943812|12944060 hsa-miR-3691-3p 0 1 0
chr19:12943812|12944060 hsa-miR-3934-3p 0 1 0
chr19:12943812|12944060 hsa-miR-1226-5p 1 0 0
chr19:12943812|12944060 hsa-miR-5001-3p 1 0 0
chr19:12943812|12944060 hsa-miR-3667-3p 1 0 0
chr19:12943812|12944060 hsa-miR-4783-5p 1 0 0
chr19:12943812|12944060 hsa-miR-6878-3p 0 1 0
chr19:12943812|12944060 hsa-miR-6809-3p 1 0 0
chr19:12943812|12944060 hsa-miR-7111-3p 1 0 0
chr19:12943812|12944060 hsa-miR-5196-3p 1 1 0
chr19:12943812|12944060 hsa-miR-4667-3p 1 0 0
chr19:12943812|12944060 hsa-miR-6739-3p 0 1 0
chr19:12943812|12944060 hsa-miR-339-5p 1 0 0
chr19:12943812|12944060 hsa-miR-4646-3p 1 0 0
chr19:12943812|12944060 hsa-miR-6870-3p 1 1 0
chr19:12943812|12944060 hsa-miR-1236-3p 0 1 0
chr19:12943812|12944060 hsa-miR-1238-3p 1 0 0
chr19:12943812|12944060 hsa-miR-670-3p 1 1 0
chr19:12943812|12944060 hsa-miR-6782-3p 1 0 0
chr19:12943812|12944060 hsa-miR-3605-3p 1 0 0
chr19:12943812|12944060 hsa-miR-6758-3p 1 1 0
chr19:12943812|12944060 hsa-miR-6886-3p 1 0 0
chr19:12943812|12944060 hsa-miR-6795-3p 1 0 0
chr19:12943812|12944060 hsa-miR-2277-5p 1 0 0
chr19:12943812|12944060 hsa-miR-518c-5p 0 1 0
chr19:12943812|12944060 hsa-miR-6883-3p 1 0 0
chr19:12943812|12944060 hsa-miR-6515-3p 1 1 0
chr19:12943812|12944060 hsa-miR-6729-3p 1 0 0
chr19:12943812|12944060 hsa-miR-6780b-3p 1 0 0
chr19:12943812|12944060 hsa-miR-4650-5p 0 1 0
chr19:12943812|12944060 hsa-miR-4763-3p 1 0 0
chr19:12943812|12944060 hsa-miR-6778-5p 1 0 0
chr19:12943812|12944060 hsa-miR-7107-5p 1 1 0
chr19:12943812|12944060 hsa-miR-320a-5p 1 1 0
chr19:12943812|12944060 hsa-miR-6754-3p 1 0 0
chr19:12943812|12944060 hsa-miR-6852-3p 1 0 0
chr19:12943812|12944060 hsa-miR-939-5p 1 0 0
chr19:12943812|12944060 hsa-miR-3116 0 1 0
chr19:12943812|12944060 hsa-miR-6791-3p 1 1 0
chr19:12943812|12944060 hsa-miR-2682-3p 1 0 0
chr19:12943812|12944060 hsa-miR-4757-5p 0 1 0
chr19:12943812|12944060 hsa-miR-6792-3p 1 0 0
chr19:12943812|12944060 hsa-miR-6829-3p 1 0 0
chr19:12943812|12944060 hsa-miR-4723-3p 1 1 0
chr19:12943812|12944060 hsa-miR-6512-3p 0 1 0
chr19:12943812|12944060 hsa-miR-6769b-3p 1 0 0
chr19:12943812|12944060 hsa-miR-6891-3p 1 1 0
chr19:12943812|12944060 hsa-miR-6744-3p 0 1 0
chr19:12943812|12944060 hsa-miR-6781-3p 1 0 0
chr19:12943812|12944060 hsa-miR-6811-5p 0 1 0
chr19:12943812|12944060 hsa-miR-6843-3p 1 0 0
chr19:12943812|12944060 hsa-miR-549a-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr19:12943812|12944060
ORF Type ORF1
Protein Length 39
Nucleotide Length 117
Protein Sequence MSAPAAELAAPNNVSVRLENFHFFPGWFGFGVDFGFVPL
Nucleotide Sequence CTGAGCGCTCCTGCCGCAGAGCTGGCCGCGCCAAATAATGTCTCTGTGAGACTCGAGAACTTTCATTTTTTTCCAGGCTGGTTCGGATTTGGGGTGGATTTTGGTTTTGTTCCCCTC
CircID chr19:12943812|12944060
ORF Type ORF2
Protein Length 42
Nucleotide Length 129
Protein Sequence MMRTKMRMRRMRRTRRKMRRKMSPARPRTSCREACLQGWTEA
Nucleotide Sequence ATGATGAGGACAAAGATGAGGATGAGGAGGATGAGGAGGACAAGGAGGAAGATGAGGAGGAAGATGTCCCCGGCCAGGCCAAGGACGAGCTGTAGAGAGGCCTGCCTCCAGGGCTGGACTGAGGCCTGA
CircID chr19:12943812|12944060
ORF Type ORF3
Protein Length 66
Nucleotide Length 198
Protein Sequence MKVLESHRDIIWRGQLCGRSAQASVQPWRQASLQLVLGLAGDIFLLIFLLVLLILLILIFVLIILL
Nucleotide Sequence ATGAAAGTTCTCGAGTCTCACAGAGACATTATTTGGCGCGGCCAGCTCTGCGGCAGGAGCGCTCAGGCCTCAGTCCAGCCCTGGAGGCAGGCCTCTCTACAGCTCGTCCTTGGCCTGGCCGGGGACATCTTCCTCCTCATCTTCCTCCTTGTCCTCCTCATCCTCCTCATCCTCATCTTTGTCCTCATCATCCTCCTT
CircID chr19:12943812|12944060
ORF Type ORF4
Protein Length 29
Nucleotide Length 87
Protein Sequence MAWPGTSSSSSSSLSSSSSSSSSLSSSSS
Nucleotide Sequence TTGGCCTGGCCGGGGACATCTTCCTCCTCATCTTCCTCCTTGTCCTCCTCATCCTCCTCATCCTCATCTTTGTCCTCATCATCCTCC
CircID chr19:12943812|12944060
ORF Type ORF5
Protein Length 69
Nucleotide Length 207
Protein Sequence MEKNESSRVSQRHYLARPALRQERSGLSPALEAGLSTARPWPGRGHLPPHLPPCPPHPPHPHLCPHHPP
Nucleotide Sequence CTGGAAAAAAATGAAAGTTCTCGAGTCTCACAGAGACATTATTTGGCGCGGCCAGCTCTGCGGCAGGAGCGCTCAGGCCTCAGTCCAGCCCTGGAGGCAGGCCTCTCTACAGCTCGTCCTTGGCCTGGCCGGGGACATCTTCCTCCTCATCTTCCTCCTTGTCCTCCTCATCCTCCTCATCCTCATCTTTGTCCTCATCATCCTCCT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab