CircRNA Information

General Information
circRNA Basic Information
CircID chr19:12943848|12944036
Strand +
CircType exon
Host Gene ENSG00000179218.12;
Algorism CIRI2;
Sequence CCCAAATCCGAACCAGCCTGGAAAAAAATGAAAGTTCTCGAGTCTCACAGAGACATTATTTGGCGCGGCCAGCTCTGCGGCAGGAGCGCTCAGGCCTCAGTCCAGCCCTGGAGGCAGGCCTCTCTACAGCTCGTCCTTGGCCTGGCCGGGGACATCTTCCTCCTCATCTTCCTCCTTGTCCTCCTCATC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:12943848|12944036 hsa-miR-146a-5p 0 0 1
chr19:12943848|12944036 hsa-miR-146a-3p 0 0 1
chr19:12943848|12944036 hsa-miR-422a 0 1 1
chr19:12943848|12944036 hsa-miR-579-5p 0 0 1
chr19:12943848|12944036 hsa-miR-579-3p 0 0 1
chr19:12943848|12944036 hsa-miR-593-5p 0 0 1
chr19:12943848|12944036 hsa-miR-593-3p 0 0 1
chr19:12943848|12944036 hsa-miR-1288-5p 0 0 1
chr19:12943848|12944036 hsa-miR-1288-3p 0 0 1
chr19:12943848|12944036 hsa-miR-339-3p 0 0 1
chr19:12943848|12944036 hsa-miR-146b-5p 0 0 1
chr19:12943848|12944036 hsa-miR-378 0 0 1
chr19:12943848|12944036 hsa-miR-1269 0 0 1
chr19:12943848|12944036 hsa-miR-583 1 0 0
chr19:12943848|12944036 hsa-miR-661 1 0 0
chr19:12943848|12944036 hsa-miR-762 1 1 0
chr19:12943848|12944036 hsa-miR-765 1 0 0
chr19:12943848|12944036 hsa-miR-665 1 0 0
chr19:12943848|12944036 hsa-miR-1261 1 0 0
chr19:12943848|12944036 hsa-miR-1269a 0 1 0
chr19:12943848|12944036 hsa-miR-3131 1 1 0
chr19:12943848|12944036 hsa-miR-378b 0 1 0
chr19:12943848|12944036 hsa-miR-378c 0 1 0
chr19:12943848|12944036 hsa-miR-4270 1 0 0
chr19:12943848|12944036 hsa-miR-4271 1 0 0
chr19:12943848|12944036 hsa-miR-378f 0 1 0
chr19:12943848|12944036 hsa-miR-4430 0 1 0
chr19:12943848|12944036 hsa-miR-378h 0 1 0
chr19:12943848|12944036 hsa-miR-4462 1 0 0
chr19:12943848|12944036 hsa-miR-4487 0 1 0
chr19:12943848|12944036 hsa-miR-4492 0 1 0
chr19:12943848|12944036 hsa-miR-4498 1 1 0
chr19:12943848|12944036 hsa-miR-4507 1 0 0
chr19:12943848|12944036 hsa-miR-1269b 0 1 0
chr19:12943848|12944036 hsa-miR-4533 1 0 0
chr19:12943848|12944036 hsa-miR-378i 0 1 0
chr19:12943848|12944036 hsa-miR-1587 1 0 0
chr19:12943848|12944036 hsa-miR-4656 1 0 0
chr19:12943848|12944036 hsa-miR-4689 1 1 0
chr19:12943848|12944036 hsa-miR-4739 1 1 0
chr19:12943848|12944036 hsa-miR-4741 1 0 0
chr19:12943848|12944036 hsa-miR-6124 1 0 0
chr19:12943848|12944036 hsa-miR-6133 1 0 0
chr19:12943848|12944036 hsa-miR-12118 1 1 0
chr19:12943848|12944036 hsa-miR-6734-5p 1 1 0
chr19:12943848|12944036 hsa-miR-504-3p 1 0 0
chr19:12943848|12944036 hsa-miR-4665-3p 1 0 0
chr19:12943848|12944036 hsa-miR-6809-5p 1 1 0
chr19:12943848|12944036 hsa-miR-6765-5p 1 0 0
chr19:12943848|12944036 hsa-miR-3150a-3p 1 0 0
chr19:12943848|12944036 hsa-miR-7106-5p 1 0 0
chr19:12943848|12944036 hsa-miR-6825-5p 1 0 0
chr19:12943848|12944036 hsa-miR-6894-5p 1 0 0
chr19:12943848|12944036 hsa-miR-1972 0 1 0
chr19:12943848|12944036 hsa-miR-766-5p 1 1 0
chr19:12943848|12944036 hsa-miR-7114-5p 0 1 0
chr19:12943848|12944036 hsa-miR-6089 1 0 0
chr19:12943848|12944036 hsa-miR-7847-3p 1 1 0
chr19:12943848|12944036 hsa-miR-4695-5p 1 0 0
chr19:12943848|12944036 hsa-miR-6744-5p 1 0 0
chr19:12943848|12944036 hsa-miR-4722-5p 1 0 0
chr19:12943848|12944036 hsa-miR-7154-3p 1 1 0
chr19:12943848|12944036 hsa-miR-6820-5p 1 0 0
chr19:12943848|12944036 hsa-miR-3180-3p 1 0 0
chr19:12943848|12944036 hsa-miR-6798-5p 1 0 0
chr19:12943848|12944036 hsa-miR-1224-5p 1 0 0
chr19:12943848|12944036 hsa-miR-3150b-3p 1 0 0
chr19:12943848|12944036 hsa-miR-6810-5p 1 0 0
chr19:12943848|12944036 hsa-miR-7855-5p 1 0 0
chr19:12943848|12944036 hsa-miR-6735-3p 1 0 0
chr19:12943848|12944036 hsa-miR-1226-5p 1 0 0
chr19:12943848|12944036 hsa-miR-6763-3p 0 1 0
chr19:12943848|12944036 hsa-miR-3944-3p 1 0 0
chr19:12943848|12944036 hsa-miR-1229-5p 1 0 0
chr19:12943848|12944036 hsa-miR-3127-5p 1 0 0
chr19:12943848|12944036 hsa-miR-296-3p 1 1 0
chr19:12943848|12944036 hsa-miR-6771-5p 1 0 0
chr19:12943848|12944036 hsa-miR-3648 0 1 0
chr19:12943848|12944036 hsa-miR-4446-3p 0 1 0
chr19:12943848|12944036 hsa-miR-3616-3p 1 0 0
chr19:12943848|12944036 hsa-miR-6830-5p 1 0 0
chr19:12943848|12944036 hsa-miR-4707-5p 0 1 0
chr19:12943848|12944036 hsa-miR-6832-5p 0 1 0
chr19:12943848|12944036 hsa-miR-4649-3p 0 1 0
chr19:12943848|12944036 hsa-miR-5004-5p 0 1 0
chr19:12943848|12944036 hsa-miR-4677-3p 0 1 0
chr19:12943848|12944036 hsa-miR-6870-5p 1 0 0
chr19:12943848|12944036 hsa-miR-5001-5p 1 1 0
chr19:12943848|12944036 hsa-miR-6737-5p 1 0 0
chr19:12943848|12944036 hsa-miR-6754-5p 1 0 0
chr19:12943848|12944036 hsa-miR-6819-5p 1 0 0
chr19:12943848|12944036 hsa-miR-6851-5p 1 0 0
chr19:12943848|12944036 hsa-miR-11181-3p 1 0 0
chr19:12943848|12944036 hsa-miR-1249-5p 1 0 0
chr19:12943848|12944036 hsa-miR-6763-5p 1 0 0
chr19:12943848|12944036 hsa-miR-6797-5p 1 0 0
chr19:12943848|12944036 hsa-miR-7111-5p 1 0 0
chr19:12943848|12944036 hsa-miR-3620-5p 1 1 0
chr19:12943848|12944036 hsa-miR-6780b-5p 1 0 0
chr19:12943848|12944036 hsa-miR-10526-3p 1 0 0
chr19:12943848|12944036 hsa-miR-4685-5p 1 1 0
chr19:12943848|12944036 hsa-miR-6729-5p 1 0 0
chr19:12943848|12944036 hsa-miR-6738-5p 1 0 0
chr19:12943848|12944036 hsa-miR-6794-5p 1 0 0
chr19:12943848|12944036 hsa-miR-6846-5p 1 0 0
chr19:12943848|12944036 hsa-miR-6848-5p 1 0 0
chr19:12943848|12944036 hsa-miR-6858-5p 1 1 0
chr19:12943848|12944036 hsa-miR-939-5p 1 0 0
chr19:12943848|12944036 hsa-miR-4758-5p 1 0 0
chr19:12943848|12944036 hsa-miR-10394-3p 1 0 0
chr19:12943848|12944036 hsa-miR-4665-5p 1 0 0
chr19:12943848|12944036 hsa-miR-7151-3p 1 0 0
chr19:12943848|12944036 hsa-miR-3173-3p 1 1 0
chr19:12943848|12944036 hsa-miR-3679-5p 1 0 0
chr19:12943848|12944036 hsa-miR-4747-5p 1 0 0
chr19:12943848|12944036 hsa-miR-6891-5p 1 1 0
chr19:12943848|12944036 hsa-miR-378a-3p 0 1 0
chr19:12943848|12944036 hsa-miR-4716-3p 1 0 0
chr19:12943848|12944036 hsa-miR-4667-5p 1 0 0
chr19:12943848|12944036 hsa-miR-378d 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr19:12943848|12944036
ORF Type ORF1
Protein Length 54
Nucleotide Length 162
Protein Sequence MKVLESHRDIIWRGQLCGRSAQASVQPWRQASLQLVLGLAGDIFLLIFLLVLLI
Nucleotide Sequence ATGAAAGTTCTCGAGTCTCACAGAGACATTATTTGGCGCGGCCAGCTCTGCGGCAGGAGCGCTCAGGCCTCAGTCCAGCCCTGGAGGCAGGCCTCTCTACAGCTCGTCCTTGGCCTGGCCGGGGACATCTTCCTCCTCATCTTCCTCCTTGTCCTCCTCATC
CircID chr19:12943848|12944036
ORF Type ORF2
Protein Length 57
Nucleotide Length 171
Protein Sequence MEKNESSRVSQRHYLARPALRQERSGLSPALEAGLSTARPWPGRGHLPPHLPPCPPH
Nucleotide Sequence CTGGAAAAAAATGAAAGTTCTCGAGTCTCACAGAGACATTATTTGGCGCGGCCAGCTCTGCGGCAGGAGCGCTCAGGCCTCAGTCCAGCCCTGGAGGCAGGCCTCTCTACAGCTCGTCCTTGGCCTGGCCGGGGACATCTTCCTCCTCATCTTCCTCCTTGTCCTCCTCAT
CircID chr19:12943848|12944036
ORF Type ORF3
Protein Length 31
Nucleotide Length 93
Protein Sequence MSAPAAELAAPNNVSVRLENFHFFPGWFGFG
Nucleotide Sequence CTGAGCGCTCCTGCCGCAGAGCTGGCCGCGCCAAATAATGTCTCTGTGAGACTCGAGAACTTTCATTTTTTTCCAGGCTGGTTCGGATTTGGG
CircID chr19:12943848|12944036
ORF Type ORF4
Protein Length 32
Nucleotide Length 99
Protein Sequence MRRTRRKMRRKMSPARPRTSCREACLQGWTEA
Nucleotide Sequence ATGAGGAGGACAAGGAGGAAGATGAGGAGGAAGATGTCCCCGGCCAGGCCAAGGACGAGCTGTAGAGAGGCCTGCCTCCAGGGCTGGACTGAGGCCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab