CircRNA Information

General Information
circRNA Basic Information
CircID chr19:12943870|12944036
Strand +
CircType exon
Host Gene ENSG00000179218.12;
Algorism CIRI2;
Sequence CCCAAATCCGAACCAGCCTGGAAAAAAATGAAAGTTCTCGAGTCTCACAGAGACATTATTTGGCGCGGCCAGCTCTGCGGCAGGAGCGCTCAGGCCTCAGTCCAGCCCTGGAGGCAGGCCTCTCTACAGCTCGTCCTTGGCCTGGCCGGGGACATCTTCCTCCTCAT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:12943870|12944036 hsa-miR-146a-5p 0 0 1
chr19:12943870|12944036 hsa-miR-146a-3p 0 0 1
chr19:12943870|12944036 hsa-miR-422a 0 1 1
chr19:12943870|12944036 hsa-miR-579-5p 0 0 1
chr19:12943870|12944036 hsa-miR-579-3p 0 0 1
chr19:12943870|12944036 hsa-miR-593-5p 0 0 1
chr19:12943870|12944036 hsa-miR-593-3p 0 0 1
chr19:12943870|12944036 hsa-miR-1288-5p 0 0 1
chr19:12943870|12944036 hsa-miR-1288-3p 0 0 1
chr19:12943870|12944036 hsa-miR-339-3p 0 0 1
chr19:12943870|12944036 hsa-miR-146b-5p 0 0 1
chr19:12943870|12944036 hsa-miR-378 0 0 1
chr19:12943870|12944036 hsa-miR-1269 0 0 1
chr19:12943870|12944036 hsa-miR-661 1 0 0
chr19:12943870|12944036 hsa-miR-762 1 1 0
chr19:12943870|12944036 hsa-miR-1269a 0 1 0
chr19:12943870|12944036 hsa-miR-378b 0 1 0
chr19:12943870|12944036 hsa-miR-378c 0 1 0
chr19:12943870|12944036 hsa-miR-378f 0 1 0
chr19:12943870|12944036 hsa-miR-4430 0 1 0
chr19:12943870|12944036 hsa-miR-378h 0 1 0
chr19:12943870|12944036 hsa-miR-4487 0 1 0
chr19:12943870|12944036 hsa-miR-4492 0 1 0
chr19:12943870|12944036 hsa-miR-4498 1 1 0
chr19:12943870|12944036 hsa-miR-4507 1 0 0
chr19:12943870|12944036 hsa-miR-1269b 0 1 0
chr19:12943870|12944036 hsa-miR-378i 0 1 0
chr19:12943870|12944036 hsa-miR-1587 1 0 0
chr19:12943870|12944036 hsa-miR-4656 1 0 0
chr19:12943870|12944036 hsa-miR-4739 1 0 0
chr19:12943870|12944036 hsa-miR-4741 1 0 0
chr19:12943870|12944036 hsa-miR-4665-3p 1 0 0
chr19:12943870|12944036 hsa-miR-1972 0 1 0
chr19:12943870|12944036 hsa-miR-766-5p 0 1 0
chr19:12943870|12944036 hsa-miR-7114-5p 0 1 0
chr19:12943870|12944036 hsa-miR-6089 1 0 0
chr19:12943870|12944036 hsa-miR-6820-5p 1 0 0
chr19:12943870|12944036 hsa-miR-6735-3p 1 0 0
chr19:12943870|12944036 hsa-miR-6763-3p 1 1 0
chr19:12943870|12944036 hsa-miR-3944-3p 1 0 0
chr19:12943870|12944036 hsa-miR-3127-5p 1 0 0
chr19:12943870|12944036 hsa-miR-296-3p 1 1 0
chr19:12943870|12944036 hsa-miR-3648 0 1 0
chr19:12943870|12944036 hsa-miR-4446-3p 0 1 0
chr19:12943870|12944036 hsa-miR-4707-5p 0 1 0
chr19:12943870|12944036 hsa-miR-6832-5p 0 1 0
chr19:12943870|12944036 hsa-miR-4649-3p 0 1 0
chr19:12943870|12944036 hsa-miR-4677-3p 0 1 0
chr19:12943870|12944036 hsa-miR-5001-5p 1 1 0
chr19:12943870|12944036 hsa-miR-7111-5p 1 0 0
chr19:12943870|12944036 hsa-miR-3620-5p 1 1 0
chr19:12943870|12944036 hsa-miR-4685-5p 1 1 0
chr19:12943870|12944036 hsa-miR-6729-5p 1 0 0
chr19:12943870|12944036 hsa-miR-6846-5p 1 0 0
chr19:12943870|12944036 hsa-miR-6858-5p 1 1 0
chr19:12943870|12944036 hsa-miR-939-5p 1 0 0
chr19:12943870|12944036 hsa-miR-10394-3p 1 0 0
chr19:12943870|12944036 hsa-miR-7151-3p 1 0 0
chr19:12943870|12944036 hsa-miR-378a-3p 0 1 0
chr19:12943870|12944036 hsa-miR-378d 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr19:12943870|12944036
ORF Type ORF1
Protein Length 46
Nucleotide Length 138
Protein Sequence MKVLESHRDIIWRGQLCGRSAQASVQPWRQASLQLVLGLAGDIFLL
Nucleotide Sequence ATGAAAGTTCTCGAGTCTCACAGAGACATTATTTGGCGCGGCCAGCTCTGCGGCAGGAGCGCTCAGGCCTCAGTCCAGCCCTGGAGGCAGGCCTCTCTACAGCTCGTCCTTGGCCTGGCCGGGGACATCTTCCTCCTC

CircID chr19:12943870|12944036
ORF Type ORF2
Protein Length 50
Nucleotide Length 150
Protein Sequence MEKNESSRVSQRHYLARPALRQERSGLSPALEAGLSTARPWPGRGHLPPH
Nucleotide Sequence CTGGAAAAAAATGAAAGTTCTCGAGTCTCACAGAGACATTATTTGGCGCGGCCAGCTCTGCGGCAGGAGCGCTCAGGCCTCAGTCCAGCCCTGGAGGCAGGCCTCTCTACAGCTCGTCCTTGGCCTGGCCGGGGACATCTTCCTCCTCAT

CircID chr19:12943870|12944036
ORF Type ORF3
Protein Length 25
Nucleotide Length 78
Protein Sequence MRRKMSPARPRTSCREACLQGWTEA
Nucleotide Sequence ATGAGGAGGAAGATGTCCCCGGCCAGGCCAAGGACGAGCTGTAGAGAGGCCTGCCTCCAGGGCTGGACTGAGGCCTGA

CircID chr19:12943870|12944036
ORF Type ORF4
Protein Length 31
Nucleotide Length 93
Protein Sequence MSAPAAELAAPNNVSVRLENFHFFPGWFGFG
Nucleotide Sequence CTGAGCGCTCCTGCCGCAGAGCTGGCCGCGCCAAATAATGTCTCTGTGAGACTCGAGAACTTTCATTTTTTTCCAGGCTGGTTCGGATTTGGG

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites