CircRNA Information

General Information
circRNA Basic Information
CircID chr19:12948213|12948352
Strand +
CircType exon
Host Gene ENSG00000179262.8;
Algorism CIRI2;
Sequence ACAGACTCTGGGGACGTCGTGGGGGCGGATTCCTCTGATGGGCTCTTGTCCTCTCTGGCGGCAGGTGGGGGATGGGACATGCCTGAGGTGGGGGCAGGCGGGAAGGATGTAGAGGACTCTGGGGCAGCTGTGGGTGAGGC
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:12948213|12948352 hsa-miR-22-5p 0 0 1
chr19:12948213|12948352 hsa-miR-22-3p 0 0 1
chr19:12948213|12948352 hsa-miR-335-5p 0 0 1
chr19:12948213|12948352 hsa-miR-335-3p 0 0 1
chr19:12948213|12948352 hsa-miR-361-3p 0 0 1
chr19:12948213|12948352 hsa-miR-1224-3p 0 1 1
chr19:12948213|12948352 hsa-miR-324-3p 0 0 1
chr19:12948213|12948352 hsa-miR-346 1 0 0
chr19:12948213|12948352 hsa-miR-596 1 0 0
chr19:12948213|12948352 hsa-miR-646 1 0 0
chr19:12948213|12948352 hsa-miR-1260a 0 1 0
chr19:12948213|12948352 hsa-miR-1913 1 1 0
chr19:12948213|12948352 hsa-miR-718 1 0 0
chr19:12948213|12948352 hsa-miR-4313 1 0 0
chr19:12948213|12948352 hsa-miR-3909 0 1 0
chr19:12948213|12948352 hsa-miR-3943 1 0 0
chr19:12948213|12948352 hsa-miR-6749-3p 1 0 0
chr19:12948213|12948352 hsa-miR-18a-3p 1 0 0
chr19:12948213|12948352 hsa-miR-6747-3p 1 0 0
chr19:12948213|12948352 hsa-miR-4726-3p 1 0 0
chr19:12948213|12948352 hsa-miR-6881-3p 1 0 0
chr19:12948213|12948352 hsa-miR-1225-3p 1 0 0
chr19:12948213|12948352 hsa-miR-874-5p 1 0 0
chr19:12948213|12948352 hsa-miR-6875-3p 1 1 0
chr19:12948213|12948352 hsa-miR-6806-5p 1 0 0
chr19:12948213|12948352 hsa-miR-3189-5p 1 0 0
chr19:12948213|12948352 hsa-miR-6849-3p 1 0 0
chr19:12948213|12948352 hsa-miR-6787-3p 1 0 0
chr19:12948213|12948352 hsa-miR-6882-3p 1 0 0
chr19:12948213|12948352 hsa-miR-4713-5p 1 0 0
chr19:12948213|12948352 hsa-miR-6772-3p 1 0 0
chr19:12948213|12948352 hsa-miR-4763-5p 1 1 0
chr19:12948213|12948352 hsa-miR-7108-3p 1 0 0
chr19:12948213|12948352 hsa-miR-1247-5p 1 0 0
chr19:12948213|12948352 hsa-miR-4707-3p 1 0 0
chr19:12948213|12948352 hsa-miR-6894-3p 1 0 0
chr19:12948213|12948352 hsa-miR-5001-3p 1 0 0
chr19:12948213|12948352 hsa-miR-7113-3p 1 0 0
chr19:12948213|12948352 hsa-miR-7111-3p 1 0 0
chr19:12948213|12948352 hsa-miR-6780a-3p 0 1 0
chr19:12948213|12948352 hsa-miR-5196-3p 1 0 0
chr19:12948213|12948352 hsa-miR-6870-3p 0 1 0
chr19:12948213|12948352 hsa-miR-4707-5p 1 0 0
chr19:12948213|12948352 hsa-miR-1237-3p 1 0 0
chr19:12948213|12948352 hsa-miR-1236-3p 1 0 0
chr19:12948213|12948352 hsa-miR-4758-3p 1 1 0
chr19:12948213|12948352 hsa-miR-6752-3p 1 0 0
chr19:12948213|12948352 hsa-miR-4749-3p 1 0 0
chr19:12948213|12948352 hsa-miR-5004-5p 0 1 0
chr19:12948213|12948352 hsa-miR-6748-3p 1 0 0
chr19:12948213|12948352 hsa-miR-4433a-5p 1 0 0
chr19:12948213|12948352 hsa-miR-4750-3p 1 0 0
chr19:12948213|12948352 hsa-miR-4433b-5p 1 1 0
chr19:12948213|12948352 hsa-miR-6734-3p 0 1 0
chr19:12948213|12948352 hsa-miR-1249-3p 1 0 0
chr19:12948213|12948352 hsa-miR-6729-3p 0 1 0
chr19:12948213|12948352 hsa-miR-1228-3p 1 0 0
chr19:12948213|12948352 hsa-miR-18b-3p 1 0 0
chr19:12948213|12948352 hsa-miR-4485-5p 0 1 0
chr19:12948213|12948352 hsa-miR-4740-3p 1 0 0
chr19:12948213|12948352 hsa-miR-6754-3p 1 1 0
chr19:12948213|12948352 hsa-miR-6852-3p 0 1 0
chr19:12948213|12948352 hsa-miR-10396a-3p 1 0 0
chr19:12948213|12948352 hsa-miR-10396b-3p 1 0 0
chr19:12948213|12948352 hsa-miR-6758-5p 0 1 0
chr19:12948213|12948352 hsa-miR-6856-5p 0 1 0
chr19:12948213|12948352 hsa-miR-4722-3p 1 0 0
chr19:12948213|12948352 hsa-miR-6893-3p 1 0 0
chr19:12948213|12948352 hsa-miR-6511a-3p 1 0 0
chr19:12948213|12948352 hsa-miR-6784-3p 1 1 0
chr19:12948213|12948352 hsa-miR-6792-3p 1 0 0
chr19:12948213|12948352 hsa-miR-6862-3p 1 1 0
chr19:12948213|12948352 hsa-miR-10401-3p 1 0 0
chr19:12948213|12948352 hsa-miR-6805-3p 1 0 0
chr19:12948213|12948352 hsa-miR-6511b-3p 1 0 0
chr19:12948213|12948352 hsa-miR-6859-5p 0 1 0
chr19:12948213|12948352 hsa-miR-4800-3p 1 0 0
chr19:12948213|12948352 hsa-miR-6834-3p 1 1 0
chr19:12948213|12948352 hsa-miR-549a-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr19:12948213|12948352
ORF Type ORF1
Protein Length 31
Nucleotide Length 93
Protein Sequence MSSLAAGGGWDMPEVGAGGKDVEDSGAAVGE
Nucleotide Sequence TTGTCCTCTCTGGCGGCAGGTGGGGGATGGGACATGCCTGAGGTGGGGGCAGGCGGGAAGGATGTAGAGGACTCTGGGGCAGCTGTGGGTGAG
CircID chr19:12948213|12948352
ORF Type ORF2
Protein Length 34
Nucleotide Length 105
Protein Sequence MGTSWGRIPLMGSCPLWRQVGDGTCLRWGQAGRM
Nucleotide Sequence CTGGGGACGTCGTGGGGGCGGATTCCTCTGATGGGCTCTTGTCCTCTCTGGCGGCAGGTGGGGGATGGGACATGCCTGAGGTGGGGGCAGGCGGGAAGGATGTAG
CircID chr19:12948213|12948352
ORF Type ORF3
Protein Length 26
Nucleotide Length 78
Protein Sequence MSHPPPAAREDKSPSEESAPTTSPES
Nucleotide Sequence ATGTCCCATCCCCCACCTGCCGCCAGAGAGGACAAGAGCCCATCAGAGGAATCCGCCCCCACGACGTCCCCAGAGTCT
CircID chr19:12948213|12948352
ORF Type ORF4
Protein Length 42
Nucleotide Length 126
Protein Sequence MPQSPLHPSRLPPPQACPIPHLPPERTRAHQRNPPPRRPQSL
Nucleotide Sequence CTGCCCCAGAGTCCTCTACATCCTTCCCGCCTGCCCCCACCTCAGGCATGTCCCATCCCCCACCTGCCGCCAGAGAGGACAAGAGCCCATCAGAGGAATCCGCCCCCACGACGTCCCCAGAGTCTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab