CircRNA Information

General Information
circRNA Basic Information
CircID chr19:12956863|12956969
Strand -
CircType exon
Host Gene ENSG00000179271.2;
Algorism CIRI2;
Sequence CTCTCCCGACGCTTCTGCTCTTCGGCCAGCTGCTTCACCCGCAGCGACTCCTGCATGGTCGCCAGGCTCGGGTACCATTCGCGTTCTTCGGCCTCCAGCTCCCGCAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:12956863|12956969 hsa-miR-591 0 0 1
chr19:12956863|12956969 hsa-miR-639 1 1 1
chr19:12956863|12956969 hsa-miR-646 0 1 1
chr19:12956863|12956969 hsa-miR-650 0 0 1
chr19:12956863|12956969 hsa-miR-298 0 1 1
chr19:12956863|12956969 hsa-miR-920 0 1 1
chr19:12956863|12956969 hsa-miR-1286 0 0 1
chr19:12956863|12956969 hsa-miR-1263 0 1 1
chr19:12956863|12956969 hsa-miR-615-3p 0 1 1
chr19:12956863|12956969 hsa-miR-1207-3p 0 1 1
chr19:12956863|12956969 hsa-miR-1273 0 0 1
chr19:12956863|12956969 hsa-miR-886-3p 0 0 1
chr19:12956863|12956969 hsa-miR-637 1 0 0
chr19:12956863|12956969 hsa-miR-638 1 0 0
chr19:12956863|12956969 hsa-miR-762 1 0 0
chr19:12956863|12956969 hsa-miR-2278 0 1 0
chr19:12956863|12956969 hsa-miR-2861 1 0 0
chr19:12956863|12956969 hsa-miR-4300 0 1 0
chr19:12956863|12956969 hsa-miR-3612 1 0 0
chr19:12956863|12956969 hsa-miR-3652 1 0 0
chr19:12956863|12956969 hsa-miR-3135b 1 0 0
chr19:12956863|12956969 hsa-miR-4468 0 1 0
chr19:12956863|12956969 hsa-miR-4487 1 1 0
chr19:12956863|12956969 hsa-miR-3960 1 0 0
chr19:12956863|12956969 hsa-miR-4654 1 0 0
chr19:12956863|12956969 hsa-miR-4734 0 1 0
chr19:12956863|12956969 hsa-miR-4767 1 0 0
chr19:12956863|12956969 hsa-miR-6081 1 0 0
chr19:12956863|12956969 hsa-miR-12120 1 0 0
chr19:12956863|12956969 hsa-miR-4731-5p 1 0 0
chr19:12956863|12956969 hsa-miR-1287-5p 1 0 0
chr19:12956863|12956969 hsa-miR-4433a-3p 0 1 0
chr19:12956863|12956969 hsa-miR-6894-5p 1 0 0
chr19:12956863|12956969 hsa-miR-6089 1 1 0
chr19:12956863|12956969 hsa-miR-6880-5p 1 0 0
chr19:12956863|12956969 hsa-miR-6746-5p 1 0 0
chr19:12956863|12956969 hsa-miR-4722-5p 1 1 0
chr19:12956863|12956969 hsa-miR-4640-5p 1 0 0
chr19:12956863|12956969 hsa-miR-4671-5p 0 1 0
chr19:12956863|12956969 hsa-miR-6749-5p 1 0 0
chr19:12956863|12956969 hsa-miR-4743-5p 1 0 0
chr19:12956863|12956969 hsa-miR-6781-5p 1 0 0
chr19:12956863|12956969 hsa-miR-6877-5p 1 1 0
chr19:12956863|12956969 hsa-miR-1233-5p 1 0 0
chr19:12956863|12956969 hsa-miR-6769b-5p 1 0 0
chr19:12956863|12956969 hsa-miR-5001-5p 1 0 0
chr19:12956863|12956969 hsa-miR-6726-5p 1 1 0
chr19:12956863|12956969 hsa-miR-6803-5p 1 0 0
chr19:12956863|12956969 hsa-miR-6851-5p 1 0 0
chr19:12956863|12956969 hsa-miR-6722-3p 1 0 0
chr19:12956863|12956969 hsa-miR-3620-5p 1 0 0
chr19:12956863|12956969 hsa-miR-1237-5p 1 0 0
chr19:12956863|12956969 hsa-miR-4649-5p 1 0 0
chr19:12956863|12956969 hsa-miR-6729-5p 1 0 0
chr19:12956863|12956969 hsa-miR-6846-5p 1 1 0
chr19:12956863|12956969 hsa-miR-6848-5p 1 0 0
chr19:12956863|12956969 hsa-miR-939-5p 1 1 0
chr19:12956863|12956969 hsa-miR-4665-5p 1 0 0
chr19:12956863|12956969 hsa-miR-10398-3p 1 0 0
chr19:12956863|12956969 hsa-miR-6884-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:12956863|12956969
ORF Type ORF1
Protein Length 31
Nucleotide Length 93
Protein Sequence MLFGQLLHPQRLLHGRQARVPFAFFGLQLPQ
Nucleotide Sequence CTGCTCTTCGGCCAGCTGCTTCACCCGCAGCGACTCCTGCATGGTCGCCAGGCTCGGGTACCATTCGCGTTCTTCGGCCTCCAGCTCCCGCAG
CircID chr19:12956863|12956969
ORF Type ORF2
Protein Length 35
Nucleotide Length 105
Protein Sequence LRELEAEEREWYPSLATMQESLRVKQLAEEQKRRE
Nucleotide Sequence CTGCGGGAGCTGGAGGCCGAAGAACGCGAATGGTACCCGAGCCTGGCGACCATGCAGGAGTCGCTGCGGGTGAAGCAGCTGGCCGAAGAGCAGAAGCGTCGGGAG
CircID chr19:12956863|12956969
ORF Type ORF3
Protein Length 26
Nucleotide Length 78
Protein Sequence MVPEPGDHAGVAAGEAAGRRAEASGE
Nucleotide Sequence ATGGTACCCGAGCCTGGCGACCATGCAGGAGTCGCTGCGGGTGAAGCAGCTGGCCGAAGAGCAGAAGCGTCGGGAGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab