CircRNA Information

General Information
circRNA Basic Information
CircID chr19:13006147|13006430
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CGTATGGCATATCCACAAATATGGATAATAGATGAGCTCAGATTGAAGAAATGACAGGCAACATGGTCTGGGCAAATGATGGGCATGCCATGCTGAGCCACACACCCTTGACCTCCAGTCTGCCCCCTGGAGAGAGAAAGGGGCCTGGTGGGCTGCACTTGAGCTATAGCAAGGCAGCGTTCAAAATCATCATCTCACCATGAGGTCTCCGTGCCCACCTCTGCTAAAACCACAGCTGCCCAGCACTCCCGAGGGCCCGGCCAGCTCTGTTCTTCCCACAGCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:13006147|13006430 hsa-miR-143-5p 0 0 1
chr19:13006147|13006430 hsa-miR-143-3p 0 0 1
chr19:13006147|13006430 hsa-miR-564 0 0 1
chr19:13006147|13006430 hsa-miR-579-5p 0 0 1
chr19:13006147|13006430 hsa-miR-579-3p 0 0 1
chr19:13006147|13006430 hsa-miR-591 0 1 1
chr19:13006147|13006430 hsa-miR-612 1 0 1
chr19:13006147|13006430 hsa-miR-616-5p 0 0 1
chr19:13006147|13006430 hsa-miR-616-3p 0 0 1
chr19:13006147|13006430 hsa-miR-766-5p 0 0 1
chr19:13006147|13006430 hsa-miR-766-3p 0 0 1
chr19:13006147|13006430 hsa-miR-541-5p 0 0 1
chr19:13006147|13006430 hsa-miR-541-3p 0 0 1
chr19:13006147|13006430 hsa-miR-887-5p 0 0 1
chr19:13006147|13006430 hsa-miR-887-3p 0 0 1
chr19:13006147|13006430 hsa-miR-1272 0 0 1
chr19:13006147|13006430 hsa-miR-769-5p 0 1 1
chr19:13006147|13006430 hsa-miR-512-3p 1 1 1
chr19:13006147|13006430 hsa-miR-486-3p 0 0 1
chr19:13006147|13006430 hsa-miR-654-5p 1 1 1
chr19:13006147|13006430 hsa-miR-519b-3p 0 1 1
chr19:13006147|13006430 hsa-miR-519c-3p 0 0 1
chr19:13006147|13006430 hsa-miR-644 0 0 1
chr19:13006147|13006430 hsa-miR-1285 0 0 1
chr19:13006147|13006430 hsa-miR-24 0 0 1
chr19:13006147|13006430 hsa-miR-147 0 0 1
chr19:13006147|13006430 hsa-miR-519a 0 0 1
chr19:13006147|13006430 hsa-miR-608 1 0 0
chr19:13006147|13006430 hsa-miR-663a 1 0 0
chr19:13006147|13006430 hsa-miR-658 1 0 0
chr19:13006147|13006430 hsa-miR-762 1 0 0
chr19:13006147|13006430 hsa-miR-920 1 0 0
chr19:13006147|13006430 hsa-miR-933 0 1 0
chr19:13006147|13006430 hsa-miR-3147 1 0 0
chr19:13006147|13006430 hsa-miR-3178 1 0 0
chr19:13006147|13006430 hsa-miR-3181 1 0 0
chr19:13006147|13006430 hsa-miR-3196 1 0 0
chr19:13006147|13006430 hsa-miR-4257 1 1 0
chr19:13006147|13006430 hsa-miR-3621 1 0 0
chr19:13006147|13006430 hsa-miR-4440 1 0 0
chr19:13006147|13006430 hsa-miR-4455 0 1 0
chr19:13006147|13006430 hsa-miR-4463 0 1 0
chr19:13006147|13006430 hsa-miR-4487 1 1 0
chr19:13006147|13006430 hsa-miR-4498 1 0 0
chr19:13006147|13006430 hsa-miR-4505 1 0 0
chr19:13006147|13006430 hsa-miR-1587 1 0 0
chr19:13006147|13006430 hsa-miR-4651 1 0 0
chr19:13006147|13006430 hsa-miR-4660 1 0 0
chr19:13006147|13006430 hsa-miR-4674 1 0 0
chr19:13006147|13006430 hsa-miR-4706 1 0 0
chr19:13006147|13006430 hsa-miR-4739 1 0 0
chr19:13006147|13006430 hsa-miR-4741 1 0 0
chr19:13006147|13006430 hsa-miR-5090 1 1 0
chr19:13006147|13006430 hsa-miR-5685 0 1 0
chr19:13006147|13006430 hsa-miR-5787 1 0 0
chr19:13006147|13006430 hsa-miR-6131 1 0 0
chr19:13006147|13006430 hsa-miR-6133 1 0 0
chr19:13006147|13006430 hsa-miR-6860 1 1 0
chr19:13006147|13006430 hsa-miR-7705 0 1 0
chr19:13006147|13006430 hsa-miR-6734-5p 1 0 0
chr19:13006147|13006430 hsa-miR-504-3p 1 1 0
chr19:13006147|13006430 hsa-miR-4433a-3p 1 0 0
chr19:13006147|13006430 hsa-miR-215-3p 0 1 0
chr19:13006147|13006430 hsa-miR-3150a-3p 1 0 0
chr19:13006147|13006430 hsa-miR-6861-5p 1 0 0
chr19:13006147|13006430 hsa-miR-7106-5p 1 0 0
chr19:13006147|13006430 hsa-miR-4687-3p 1 0 0
chr19:13006147|13006430 hsa-miR-3622a-5p 1 1 0
chr19:13006147|13006430 hsa-miR-3192-5p 1 0 0
chr19:13006147|13006430 hsa-miR-6746-5p 1 0 0
chr19:13006147|13006430 hsa-miR-6741-5p 1 0 0
chr19:13006147|13006430 hsa-miR-4474-3p 0 1 0
chr19:13006147|13006430 hsa-miR-3622b-5p 1 0 0
chr19:13006147|13006430 hsa-miR-4728-3p 1 0 0
chr19:13006147|13006430 hsa-miR-1915-5p 1 0 0
chr19:13006147|13006430 hsa-miR-6832-3p 0 1 0
chr19:13006147|13006430 hsa-miR-7108-5p 1 0 0
chr19:13006147|13006430 hsa-miR-6871-5p 1 0 0
chr19:13006147|13006430 hsa-miR-1292-5p 1 0 0
chr19:13006147|13006430 hsa-miR-6796-5p 1 1 0
chr19:13006147|13006430 hsa-miR-6829-5p 1 0 0
chr19:13006147|13006430 hsa-miR-6805-5p 0 1 0
chr19:13006147|13006430 hsa-miR-6798-5p 0 1 0
chr19:13006147|13006430 hsa-miR-2467-3p 0 1 0
chr19:13006147|13006430 hsa-miR-6782-5p 1 0 0
chr19:13006147|13006430 hsa-miR-6882-3p 0 1 0
chr19:13006147|13006430 hsa-miR-1229-5p 1 0 0
chr19:13006147|13006430 hsa-miR-885-3p 1 0 0
chr19:13006147|13006430 hsa-miR-1228-5p 1 0 0
chr19:13006147|13006430 hsa-miR-296-3p 1 0 0
chr19:13006147|13006430 hsa-miR-6771-5p 1 1 0
chr19:13006147|13006430 hsa-miR-6749-5p 1 0 0
chr19:13006147|13006430 hsa-miR-4787-5p 1 0 0
chr19:13006147|13006430 hsa-miR-4446-3p 1 0 0
chr19:13006147|13006430 hsa-miR-6824-5p 1 0 0
chr19:13006147|13006430 hsa-miR-6769a-3p 0 1 0
chr19:13006147|13006430 hsa-miR-7160-3p 1 0 0
chr19:13006147|13006430 hsa-miR-1225-5p 1 0 0
chr19:13006147|13006430 hsa-miR-1911-3p 0 1 0
chr19:13006147|13006430 hsa-miR-3619-3p 0 1 0
chr19:13006147|13006430 hsa-miR-3944-5p 0 1 0
chr19:13006147|13006430 hsa-miR-4727-3p 1 0 0
chr19:13006147|13006430 hsa-miR-4650-5p 0 1 0
chr19:13006147|13006430 hsa-miR-4716-5p 0 1 0
chr19:13006147|13006430 hsa-miR-1207-5p 1 0 0
chr19:13006147|13006430 hsa-miR-1233-5p 1 0 0
chr19:13006147|13006430 hsa-miR-6769b-5p 1 0 0
chr19:13006147|13006430 hsa-miR-6778-5p 1 0 0
chr19:13006147|13006430 hsa-miR-6812-5p 1 0 0
chr19:13006147|13006430 hsa-miR-6752-5p 1 0 0
chr19:13006147|13006430 hsa-miR-6756-5p 1 0 0
chr19:13006147|13006430 hsa-miR-6769a-5p 1 1 0
chr19:13006147|13006430 hsa-miR-6815-5p 1 0 0
chr19:13006147|13006430 hsa-miR-6851-5p 1 0 0
chr19:13006147|13006430 hsa-miR-7110-5p 1 0 0
chr19:13006147|13006430 hsa-miR-10401-5p 1 0 0
chr19:13006147|13006430 hsa-miR-6722-3p 1 0 0
chr19:13006147|13006430 hsa-miR-6751-5p 0 1 0
chr19:13006147|13006430 hsa-miR-6763-5p 1 0 0
chr19:13006147|13006430 hsa-miR-6779-5p 1 0 0
chr19:13006147|13006430 hsa-miR-6780a-5p 1 1 0
chr19:13006147|13006430 hsa-miR-7111-5p 1 0 0
chr19:13006147|13006430 hsa-miR-3620-5p 1 0 0
chr19:13006147|13006430 hsa-miR-5196-5p 1 0 0
chr19:13006147|13006430 hsa-miR-6836-5p 1 0 0
chr19:13006147|13006430 hsa-miR-10396b-5p 1 0 0
chr19:13006147|13006430 hsa-miR-1237-5p 1 0 0
chr19:13006147|13006430 hsa-miR-1909-3p 1 0 0
chr19:13006147|13006430 hsa-miR-328-5p 1 1 0
chr19:13006147|13006430 hsa-miR-4632-5p 1 1 0
chr19:13006147|13006430 hsa-miR-4685-5p 1 0 0
chr19:13006147|13006430 hsa-miR-6794-5p 1 0 0
chr19:13006147|13006430 hsa-miR-6848-5p 1 0 0
chr19:13006147|13006430 hsa-miR-3187-5p 1 1 0
chr19:13006147|13006430 hsa-miR-939-5p 1 0 0
chr19:13006147|13006430 hsa-miR-10394-3p 1 0 0
chr19:13006147|13006430 hsa-miR-6731-5p 1 0 0
chr19:13006147|13006430 hsa-miR-4646-5p 1 0 0
chr19:13006147|13006430 hsa-miR-4747-5p 1 0 0
chr19:13006147|13006430 hsa-miR-6766-5p 1 1 0
chr19:13006147|13006430 hsa-miR-6785-5p 1 0 0
chr19:13006147|13006430 hsa-miR-6724-5p 1 0 0
chr19:13006147|13006430 hsa-miR-6791-5p 1 0 0
chr19:13006147|13006430 hsa-miR-4690-3p 0 1 0
chr19:13006147|13006430 hsa-miR-6833-3p 0 1 0
chr19:13006147|13006430 hsa-miR-664b-3p 0 1 0
chr19:13006147|13006430 hsa-miR-519a-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr19:13006147|13006430
ORF Type ORF1
Protein Length 28
Nucleotide Length 84
Protein Sequence MRSPCPPLLKPQLPSTPEGPASSVLPTA
Nucleotide Sequence ATGAGGTCTCCGTGCCCACCTCTGCTAAAACCACAGCTGCCCAGCACTCCCGAGGGCCCGGCCAGCTCTGTTCTTCCCACAGCA
CircID chr19:13006147|13006430
ORF Type ORF2
Protein Length 50
Nucleotide Length 153
Protein Sequence MTGNMVWANDGHAMLSHTPLTSSLPPGERKGPGGLHLSYSKAAFKIIISP
Nucleotide Sequence ATGACAGGCAACATGGTCTGGGCAAATGATGGGCATGCCATGCTGAGCCACACACCCTTGACCTCCAGTCTGCCCCCTGGAGAGAGAAAGGGGCCTGGTGGGCTGCACTTGAGCTATAGCAAGGCAGCGTTCAAAATCATCATCTCACCATGA
CircID chr19:13006147|13006430
ORF Type ORF3
Protein Length 28
Nucleotide Length 87
Protein Sequence MWEEQSWPGPRECWAAVVLAEVGTETSW
Nucleotide Sequence CTGTGGGAAGAACAGAGCTGGCCGGGCCCTCGGGAGTGCTGGGCAGCTGTGGTTTTAGCAGAGGTGGGCACGGAGACCTCATGGTGA
CircID chr19:13006147|13006430
ORF Type ORF4
Protein Length 28
Nucleotide Length 84
Protein Sequence MPIICPDHVACHFFNLSSSIIHICGYAI
Nucleotide Sequence ATGCCCATCATTTGCCCAGACCATGTTGCCTGTCATTTCTTCAATCTGAGCTCATCTATTATCCATATTTGTGGATATGCCATA
CircID chr19:13006147|13006430
ORF Type ORF5
Protein Length 26
Nucleotide Length 81
Protein Sequence MEVKGVWLSMACPSFAQTMLPVISSI
Nucleotide Sequence CTGGAGGTCAAGGGTGTGTGGCTCAGCATGGCATGCCCATCATTTGCCCAGACCATGTTGCCTGTCATTTCTTCAATCTGA
CircID chr19:13006147|13006430
ORF Type ORF6
Protein Length 59
Nucleotide Length 177
Protein Sequence MPCYSSSAAHQAPFSLQGADWRSRVCGSAWHAHHLPRPCCLSFLQSELIYYPYLWICHT
Nucleotide Sequence CTGCCTTGCTATAGCTCAAGTGCAGCCCACCAGGCCCCTTTCTCTCTCCAGGGGGCAGACTGGAGGTCAAGGGTGTGTGGCTCAGCATGGCATGCCCATCATTTGCCCAGACCATGTTGCCTGTCATTTCTTCAATCTGAGCTCATCTATTATCCATATTTGTGGATATGCCATACG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab