CircRNA Information

General Information
circRNA Basic Information
CircID chr19:13149505|13149809
Strand -
CircType exon
Host Gene ENSG00000104915.13;
Algorism CIRI2;
Sequence TGCCTCTCGCATCCGCTCCACGAACACCTTTCTCTCCTGCAGGTCCCCGGCTGGGAGCTTGAACTTGCCTGGGTTGGCTTCCACTATACGTGGGCTGAGAGTCAAGGGTCAAGGCCGGAGCCAGATATCATCCCCGTCCCTAGGGGTCCAGCCCTACCCGAAGGTGGGCTGCCACCGCAATGGGCTCTCCCATGCCACCCTCTGCCACAAAGCCCCAGGATATCGATGGTCTCTTCCAGGTCCTCGAGGTCCCACTCGATGCTGCGCAGGCCATTCCGCAGCTCATTGGTCGTCCAGTCCAGCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:13149505|13149809 hsa-miR-107 0 1 1
chr19:13149505|13149809 hsa-miR-149-5p 0 0 1
chr19:13149505|13149809 hsa-miR-149-3p 0 0 1
chr19:13149505|13149809 hsa-miR-185-5p 0 0 1
chr19:13149505|13149809 hsa-miR-185-3p 0 0 1
chr19:13149505|13149809 hsa-miR-422a 0 1 1
chr19:13149505|13149809 hsa-miR-492 1 1 1
chr19:13149505|13149809 hsa-miR-498-5p 0 0 1
chr19:13149505|13149809 hsa-miR-498-3p 0 0 1
chr19:13149505|13149809 hsa-miR-504-5p 0 0 1
chr19:13149505|13149809 hsa-miR-504-3p 0 0 1
chr19:13149505|13149809 hsa-miR-558 0 0 1
chr19:13149505|13149809 hsa-miR-611 1 0 1
chr19:13149505|13149809 hsa-miR-619-5p 0 0 1
chr19:13149505|13149809 hsa-miR-619-3p 0 0 1
chr19:13149505|13149809 hsa-miR-631 0 1 1
chr19:13149505|13149809 hsa-miR-662 0 1 1
chr19:13149505|13149809 hsa-miR-1205 0 0 1
chr19:13149505|13149809 hsa-miR-1286 0 0 1
chr19:13149505|13149809 hsa-miR-1288-5p 0 0 1
chr19:13149505|13149809 hsa-miR-1288-3p 0 0 1
chr19:13149505|13149809 hsa-miR-671-5p 1 0 1
chr19:13149505|13149809 hsa-miR-542-5p 0 1 1
chr19:13149505|13149809 hsa-miR-885-3p 0 0 1
chr19:13149505|13149809 hsa-miR-1224-3p 0 0 1
chr19:13149505|13149809 hsa-miR-556-5p 0 0 1
chr19:13149505|13149809 hsa-miR-151-5p 0 0 1
chr19:13149505|13149809 hsa-miR-103 0 0 1
chr19:13149505|13149809 hsa-miR-7 0 0 1
chr19:13149505|13149809 hsa-miR-378 0 0 1
chr19:13149505|13149809 hsa-miR-1269 0 0 1
chr19:13149505|13149809 hsa-miR-596 1 0 0
chr19:13149505|13149809 hsa-miR-608 1 1 0
chr19:13149505|13149809 hsa-miR-637 1 0 0
chr19:13149505|13149809 hsa-miR-638 1 0 0
chr19:13149505|13149809 hsa-miR-658 1 0 0
chr19:13149505|13149809 hsa-miR-762 1 1 0
chr19:13149505|13149809 hsa-miR-765 1 0 0
chr19:13149505|13149809 hsa-miR-1182 1 0 0
chr19:13149505|13149809 hsa-miR-1183 1 0 0
chr19:13149505|13149809 hsa-miR-1303 1 0 0
chr19:13149505|13149809 hsa-miR-2861 1 0 0
chr19:13149505|13149809 hsa-miR-3131 1 1 0
chr19:13149505|13149809 hsa-miR-3132 1 0 0
chr19:13149505|13149809 hsa-miR-378b 0 1 0
chr19:13149505|13149809 hsa-miR-3154 1 0 0
chr19:13149505|13149809 hsa-miR-3170 0 1 0
chr19:13149505|13149809 hsa-miR-3188 1 0 0
chr19:13149505|13149809 hsa-miR-3193 0 1 0
chr19:13149505|13149809 hsa-miR-378c 0 1 0
chr19:13149505|13149809 hsa-miR-4298 1 0 0
chr19:13149505|13149809 hsa-miR-4306 0 1 0
chr19:13149505|13149809 hsa-miR-4292 1 0 0
chr19:13149505|13149809 hsa-miR-3649 0 1 0
chr19:13149505|13149809 hsa-miR-3654 0 1 0
chr19:13149505|13149809 hsa-miR-1268b 1 0 0
chr19:13149505|13149809 hsa-miR-378f 0 1 0
chr19:13149505|13149809 hsa-miR-4430 0 1 0
chr19:13149505|13149809 hsa-miR-4440 1 0 0
chr19:13149505|13149809 hsa-miR-4449 1 0 0
chr19:13149505|13149809 hsa-miR-378h 0 1 0
chr19:13149505|13149809 hsa-miR-3689e 0 1 0
chr19:13149505|13149809 hsa-miR-4487 0 1 0
chr19:13149505|13149809 hsa-miR-4498 0 1 0
chr19:13149505|13149809 hsa-miR-4505 1 0 0
chr19:13149505|13149809 hsa-miR-2392 1 0 0
chr19:13149505|13149809 hsa-miR-4507 1 0 0
chr19:13149505|13149809 hsa-miR-4515 1 1 0
chr19:13149505|13149809 hsa-miR-378i 0 1 0
chr19:13149505|13149809 hsa-miR-1587 1 0 0
chr19:13149505|13149809 hsa-miR-4539 1 0 0
chr19:13149505|13149809 hsa-miR-3960 1 0 0
chr19:13149505|13149809 hsa-miR-4654 1 1 0
chr19:13149505|13149809 hsa-miR-4657 1 0 0
chr19:13149505|13149809 hsa-miR-4689 1 0 0
chr19:13149505|13149809 hsa-miR-4730 1 0 0
chr19:13149505|13149809 hsa-miR-4741 1 0 0
chr19:13149505|13149809 hsa-miR-4780 0 1 0
chr19:13149505|13149809 hsa-miR-5685 0 1 0
chr19:13149505|13149809 hsa-miR-5739 1 0 0
chr19:13149505|13149809 hsa-miR-5787 1 0 0
chr19:13149505|13149809 hsa-miR-6090 1 0 0
chr19:13149505|13149809 hsa-miR-6165 1 0 0
chr19:13149505|13149809 hsa-miR-7150 1 0 0
chr19:13149505|13149809 hsa-miR-8072 1 0 0
chr19:13149505|13149809 hsa-miR-8085 1 1 0
chr19:13149505|13149809 hsa-miR-8089 1 1 0
chr19:13149505|13149809 hsa-miR-12115 1 0 0
chr19:13149505|13149809 hsa-miR-4433b-3p 1 0 0
chr19:13149505|13149809 hsa-miR-6765-5p 1 0 0
chr19:13149505|13149809 hsa-miR-212-5p 0 1 0
chr19:13149505|13149809 hsa-miR-6861-5p 1 0 0
chr19:13149505|13149809 hsa-miR-6857-5p 1 0 0
chr19:13149505|13149809 hsa-miR-6510-5p 1 0 0
chr19:13149505|13149809 hsa-miR-1227-5p 1 0 0
chr19:13149505|13149809 hsa-miR-7114-5p 1 0 0
chr19:13149505|13149809 hsa-miR-6757-5p 1 0 0
chr19:13149505|13149809 hsa-miR-6746-5p 1 0 0
chr19:13149505|13149809 hsa-miR-4722-5p 1 0 0
chr19:13149505|13149809 hsa-miR-6730-5p 1 0 0
chr19:13149505|13149809 hsa-miR-3622b-5p 1 1 0
chr19:13149505|13149809 hsa-miR-6721-5p 1 0 0
chr19:13149505|13149809 hsa-miR-4655-5p 1 0 0
chr19:13149505|13149809 hsa-miR-197-5p 1 0 0
chr19:13149505|13149809 hsa-miR-7845-5p 1 0 0
chr19:13149505|13149809 hsa-miR-6871-5p 0 1 0
chr19:13149505|13149809 hsa-miR-1292-5p 1 0 0
chr19:13149505|13149809 hsa-miR-3180-3p 1 0 0
chr19:13149505|13149809 hsa-miR-6732-5p 1 0 0
chr19:13149505|13149809 hsa-miR-3190-3p 0 1 0
chr19:13149505|13149809 hsa-miR-6805-5p 1 0 0
chr19:13149505|13149809 hsa-miR-6798-5p 1 0 0
chr19:13149505|13149809 hsa-miR-6760-5p 1 0 0
chr19:13149505|13149809 hsa-miR-6782-5p 1 0 0
chr19:13149505|13149809 hsa-miR-3150b-3p 0 1 0
chr19:13149505|13149809 hsa-miR-6810-5p 1 0 0
chr19:13149505|13149809 hsa-miR-6850-5p 0 1 0
chr19:13149505|13149809 hsa-miR-1343-3p 0 1 0
chr19:13149505|13149809 hsa-miR-6786-5p 1 0 0
chr19:13149505|13149809 hsa-miR-6852-5p 1 1 0
chr19:13149505|13149809 hsa-miR-3944-3p 1 0 0
chr19:13149505|13149809 hsa-miR-4786-3p 0 1 0
chr19:13149505|13149809 hsa-miR-193b-5p 1 1 0
chr19:13149505|13149809 hsa-miR-6784-5p 1 0 0
chr19:13149505|13149809 hsa-miR-4640-5p 1 0 0
chr19:13149505|13149809 hsa-miR-1228-5p 1 0 0
chr19:13149505|13149809 hsa-miR-6749-5p 1 0 0
chr19:13149505|13149809 hsa-miR-4787-5p 1 0 0
chr19:13149505|13149809 hsa-miR-103a-3p 0 1 0
chr19:13149505|13149809 hsa-miR-490-3p 0 1 0
chr19:13149505|13149809 hsa-miR-3191-3p 1 0 0
chr19:13149505|13149809 hsa-miR-382-5p 1 0 0
chr19:13149505|13149809 hsa-miR-1296-3p 0 1 0
chr19:13149505|13149809 hsa-miR-5195-5p 0 1 0
chr19:13149505|13149809 hsa-miR-3126-3p 0 1 0
chr19:13149505|13149809 hsa-miR-3144-5p 0 1 0
chr19:13149505|13149809 hsa-miR-6759-3p 0 1 0
chr19:13149505|13149809 hsa-miR-6790-3p 0 1 0
chr19:13149505|13149809 hsa-miR-1207-5p 1 0 0
chr19:13149505|13149809 hsa-miR-4763-3p 1 1 0
chr19:13149505|13149809 hsa-miR-6787-5p 1 1 0
chr19:13149505|13149809 hsa-miR-6816-5p 1 0 0
chr19:13149505|13149809 hsa-miR-6865-5p 1 0 0
chr19:13149505|13149809 hsa-miR-6893-5p 1 0 0
chr19:13149505|13149809 hsa-miR-1343-5p 1 0 0
chr19:13149505|13149809 hsa-miR-5001-5p 1 1 0
chr19:13149505|13149809 hsa-miR-6743-5p 1 0 0
chr19:13149505|13149809 hsa-miR-6752-5p 1 0 0
chr19:13149505|13149809 hsa-miR-6756-5p 1 1 0
chr19:13149505|13149809 hsa-miR-6803-5p 1 0 0
chr19:13149505|13149809 hsa-miR-6813-5p 1 0 0
chr19:13149505|13149809 hsa-miR-6819-5p 1 0 0
chr19:13149505|13149809 hsa-miR-6842-5p 1 0 0
chr19:13149505|13149809 hsa-miR-7107-5p 1 0 0
chr19:13149505|13149809 hsa-miR-7110-5p 1 0 0
chr19:13149505|13149809 hsa-miR-6722-3p 1 0 0
chr19:13149505|13149809 hsa-miR-6797-5p 1 0 0
chr19:13149505|13149809 hsa-miR-6808-5p 1 0 0
chr19:13149505|13149809 hsa-miR-3620-5p 1 0 0
chr19:13149505|13149809 hsa-miR-5196-5p 1 0 0
chr19:13149505|13149809 hsa-miR-6862-5p 1 0 0
chr19:13149505|13149809 hsa-miR-1909-3p 1 0 0
chr19:13149505|13149809 hsa-miR-328-5p 1 0 0
chr19:13149505|13149809 hsa-miR-4745-5p 1 1 0
chr19:13149505|13149809 hsa-miR-6777-5p 1 0 0
chr19:13149505|13149809 hsa-miR-6889-5p 1 0 0
chr19:13149505|13149809 hsa-miR-6831-5p 1 0 0
chr19:13149505|13149809 hsa-miR-939-5p 1 0 0
chr19:13149505|13149809 hsa-miR-4758-5p 1 0 0
chr19:13149505|13149809 hsa-miR-365a-5p 1 0 0
chr19:13149505|13149809 hsa-miR-365b-5p 0 1 0
chr19:13149505|13149809 hsa-miR-6511b-5p 1 0 0
chr19:13149505|13149809 hsa-miR-3198 1 0 0
chr19:13149505|13149809 hsa-miR-6731-5p 1 1 0
chr19:13149505|13149809 hsa-miR-6758-5p 1 0 0
chr19:13149505|13149809 hsa-miR-6856-5p 1 0 0
chr19:13149505|13149809 hsa-miR-6855-5p 1 0 0
chr19:13149505|13149809 hsa-miR-378a-3p 0 1 0
chr19:13149505|13149809 hsa-miR-4667-5p 1 1 0
chr19:13149505|13149809 hsa-miR-6724-5p 1 0 0
chr19:13149505|13149809 hsa-miR-6791-5p 1 1 0
chr19:13149505|13149809 hsa-miR-769-3p 1 1 0
chr19:13149505|13149809 hsa-miR-3150b-5p 0 1 0
chr19:13149505|13149809 hsa-miR-10397-5p 0 1 0
chr19:13149505|13149809 hsa-miR-4690-3p 0 1 0
chr19:13149505|13149809 hsa-miR-378d 0 1 0
chr19:13149505|13149809 hsa-miR-3922-3p 1 1 0
chr19:13149505|13149809 hsa-miR-3689a-5p 0 1 0
chr19:13149505|13149809 hsa-miR-3689b-5p 0 1 0
chr19:13149505|13149809 hsa-miR-7157-5p 0 1 0
chr19:13149505|13149809 hsa-miR-4645-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr19:13149505|13149809
ORF Type ORF1
Protein Length 89
Nucleotide Length 267
Protein Sequence MQVPGWELELAWVGFHYTWAESQGSRPEPDIIPVPRGPALPEGGLPPQWALPCHPLPQSPRISMVSSRSSRSHSMLRRPFRSSLVVQSS
Nucleotide Sequence CTGCAGGTCCCCGGCTGGGAGCTTGAACTTGCCTGGGTTGGCTTCCACTATACGTGGGCTGAGAGTCAAGGGTCAAGGCCGGAGCCAGATATCATCCCCGTCCCTAGGGGTCCAGCCCTACCCGAAGGTGGGCTGCCACCGCAATGGGCTCTCCCATGCCACCCTCTGCCACAAAGCCCCAGGATATCGATGGTCTCTTCCAGGTCCTCGAGGTCCCACTCGATGCTGCGCAGGCCATTCCGCAGCTCATTGGTCGTCCAGTCCAGC

CircID chr19:13149505|13149809
ORF Type ORF2
Protein Length 82
Nucleotide Length 246
Protein Sequence MNLPGLASTIRGLRVKGQGRSQISSPSLGVQPYPKVGCHRNGLSHATLCHKAPGYRWSLPGPRGPTRCCAGHSAAHWSSSPA
Nucleotide Sequence TTGAACTTGCCTGGGTTGGCTTCCACTATACGTGGGCTGAGAGTCAAGGGTCAAGGCCGGAGCCAGATATCATCCCCGTCCCTAGGGGTCCAGCCCTACCCGAAGGTGGGCTGCCACCGCAATGGGCTCTCCCATGCCACCCTCTGCCACAAAGCCCCAGGATATCGATGGTCTCTTCCAGGTCCTCGAGGTCCCACTCGATGCTGCGCAGGCCATTCCGCAGCTCATTGGTCGTCCAGTCCAGCT

CircID chr19:13149505|13149809
ORF Type ORF3
Protein Length 42
Nucleotide Length 126
Protein Sequence MGSPMPPSATKPQDIDGLFQVLEVPLDAAQAIPQLIGRPVQL
Nucleotide Sequence ATGGGCTCTCCCATGCCACCCTCTGCCACAAAGCCCCAGGATATCGATGGTCTCTTCCAGGTCCTCGAGGTCCCACTCGATGCTGCGCAGGCCATTCCGCAGCTCATTGGTCGTCCAGTCCAGCTC

CircID chr19:13149505|13149809
ORF Type ORF4
Protein Length 66
Nucleotide Length 201
Protein Sequence MDWTTNELRNGLRSIEWDLEDLEETIDILGLCGRGWHGRAHCGGSPPSGRAGPLGTGMISGSGLDP
Nucleotide Sequence CTGGACTGGACGACCAATGAGCTGCGGAATGGCCTGCGCAGCATCGAGTGGGACCTCGAGGACCTGGAAGAGACCATCGATATCCTGGGGCTTTGTGGCAGAGGGTGGCATGGGAGAGCCCATTGCGGTGGCAGCCCACCTTCGGGTAGGGCTGGACCCCTAGGGACGGGGATGATATCTGGCTCCGGCCTTGACCCTTGA

CircID chr19:13149505|13149809
ORF Type ORF5
Protein Length 48
Nucleotide Length 147
Protein Sequence MSCGMACAASSGTSRTWKRPSISWGFVAEGGMGEPIAVAAHLRVGLDP
Nucleotide Sequence ATGAGCTGCGGAATGGCCTGCGCAGCATCGAGTGGGACCTCGAGGACCTGGAAGAGACCATCGATATCCTGGGGCTTTGTGGCAGAGGGTGGCATGGGAGAGCCCATTGCGGTGGCAGCCCACCTTCGGGTAGGGCTGGACCCCTAG

CircID chr19:13149505|13149809
ORF Type ORF6
Protein Length 41
Nucleotide Length 123
Protein Sequence MAPALTLDSQPTYSGSQPRQVQAPSRGPAGEKGVRGADARG
Nucleotide Sequence CTGGCTCCGGCCTTGACCCTTGACTCTCAGCCCACGTATAGTGGAAGCCAACCCAGGCAAGTTCAAGCTCCCAGCCGGGGACCTGCAGGAGAGAAAGGTGTTCGTGGAGCGGATGCGAGAGGC

CircID chr19:13149505|13149809
ORF Type ORF7
Protein Length 35
Nucleotide Length 105
Protein Sequence MTLSPRIVEANPGKFKLPAGDLQERKVFVERMREA
Nucleotide Sequence TTGACTCTCAGCCCACGTATAGTGGAAGCCAACCCAGGCAAGTTCAAGCTCCCAGCCGGGGACCTGCAGGAGAGAAAGGTGTTCGTGGAGCGGATGCGAGAGGCA

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites