CircRNA Information

General Information
circRNA Basic Information
CircID chr19:13154237|13154420
Strand +
CircType exon
Host Gene ENSG00000160888.6;
Algorism CIRI2;
Sequence CCACGCAAGGCGACAGGAAGCTCCCCACGCCTGCCCCATGACGCAACGATGACCGCTTATACAAGTATGTCAGCGGAGGGGGAAGGGGAGTGCCTGGAATTCTCCGAGGTTGGAAACGCAAAACCAACTCTTGAAAAACCTTGAAAGGGCCAGCACAGCCCACAGTACAAAATGAAGTCCGACC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:13154237|13154420 hsa-miR-328-5p 0 0 1
chr19:13154237|13154420 hsa-miR-328-3p 0 0 1
chr19:13154237|13154420 hsa-miR-335-5p 0 0 1
chr19:13154237|13154420 hsa-miR-335-3p 0 0 1
chr19:13154237|13154420 hsa-miR-498-5p 0 0 1
chr19:13154237|13154420 hsa-miR-498-3p 0 0 1
chr19:13154237|13154420 hsa-miR-568 0 0 1
chr19:13154237|13154420 hsa-miR-571 0 0 1
chr19:13154237|13154420 hsa-miR-579-5p 0 0 1
chr19:13154237|13154420 hsa-miR-579-3p 0 0 1
chr19:13154237|13154420 hsa-miR-643 0 0 1
chr19:13154237|13154420 hsa-miR-892a 0 0 1
chr19:13154237|13154420 hsa-miR-920 0 0 1
chr19:13154237|13154420 hsa-miR-939-5p 0 0 1
chr19:13154237|13154420 hsa-miR-939-3p 0 0 1
chr19:13154237|13154420 hsa-miR-1291 0 0 1
chr19:13154237|13154420 hsa-miR-1305 0 0 1
chr19:13154237|13154420 hsa-miR-491-5p 0 0 1
chr19:13154237|13154420 hsa-miR-486-3p 0 0 1
chr19:13154237|13154420 hsa-miR-516a-3p 0 0 1
chr19:13154237|13154420 hsa-miR-1308 0 0 1
chr19:13154237|13154420 hsa-miR-450a 0 0 1
chr19:13154237|13154420 hsa-miR-3917 1 0 0
chr19:13154237|13154420 hsa-miR-4507 1 0 0
chr19:13154237|13154420 hsa-miR-1587 1 0 0
chr19:13154237|13154420 hsa-miR-3944-3p 1 0 0
chr19:13154237|13154420 hsa-miR-6823-5p 1 0 0
chr19:13154237|13154420 hsa-miR-3677-3p 1 0 0
chr19:13154237|13154420 hsa-miR-4529-3p 1 0 0
chr19:13154237|13154420 hsa-miR-3620-5p 1 0 0
chr19:13154237|13154420 hsa-miR-3940-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:13154237|13154420
ORF Type ORF1
Protein Length 37
Nucleotide Length 114
Protein Sequence MPHDATMTAYTSMSAEGEGECLEFSEVGNAKPTLEKP
Nucleotide Sequence CTGCCCCATGACGCAACGATGACCGCTTATACAAGTATGTCAGCGGAGGGGGAAGGGGAGTGCCTGGAATTCTCCGAGGTTGGAAACGCAAAACCAACTCTTGAAAAACCTTGA
CircID chr19:13154237|13154420
ORF Type ORF2
Protein Length 42
Nucleotide Length 126
Protein Sequence MVLRFQPRRIPGTPLPPPLTYLYKRSSLRHGAGVGSFLSPCV
Nucleotide Sequence TTGGTTTTGCGTTTCCAACCTCGGAGAATTCCAGGCACTCCCCTTCCCCCTCCGCTGACATACTTGTATAAGCGGTCATCGTTGCGTCATGGGGCAGGCGTGGGGAGCTTCCTGTCGCCTTGCGTG
CircID chr19:13154237|13154420
ORF Type ORF3
Protein Length 31
Nucleotide Length 96
Protein Sequence MWAVLALSRFFKSWFCVSNLGEFQALPFPLR
Nucleotide Sequence CTGTGGGCTGTGCTGGCCCTTTCAAGGTTTTTCAAGAGTTGGTTTTGCGTTTCCAACCTCGGAGAATTCCAGGCACTCCCCTTCCCCCTCCGCTGA
CircID chr19:13154237|13154420
ORF Type ORF4
Protein Length 37
Nucleotide Length 114
Protein Sequence MYCGLCWPFQGFSRVGFAFPTSENSRHSPSPSADILV
Nucleotide Sequence TTGTACTGTGGGCTGTGCTGGCCCTTTCAAGGTTTTTCAAGAGTTGGTTTTGCGTTTCCAACCTCGGAGAATTCCAGGCACTCCCCTTCCCCCTCCGCTGACATACTTGTATAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab