CircRNA Information

General Information
circRNA Basic Information
CircID chr19:13778079|13778295
Strand +
CircType exon
Host Gene ENSG00000104979.7;
Algorism CIRI2;
Sequence AGGGTCCTCTTCCTGACAGTGCAGCCTGTGGGATGACTTGCAAGGTCCCATATGGAGGTAGGGGGTGGGATGTTGGCCTGCACTGGGGCCAGCGTCCTCAGGAAGGTGTCTTGGAGGAGGTGGCGGCAGCTGCCCCTTTCTTCTTGGCTGGGGCCTTCAGCAGTGCCAGCTTCTTGGGCAGGCTGCTGCTGGCTTTCATCACCACGTCATGTTCGAT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:13778079|13778295 hsa-miR-15a-5p 0 0 1
chr19:13778079|13778295 hsa-miR-15a-3p 0 0 1
chr19:13778079|13778295 hsa-miR-22-5p 0 0 1
chr19:13778079|13778295 hsa-miR-22-3p 0 0 1
chr19:13778079|13778295 hsa-miR-148a-5p 0 0 1
chr19:13778079|13778295 hsa-miR-148a-3p 0 0 1
chr19:13778079|13778295 hsa-miR-15b-5p 0 0 1
chr19:13778079|13778295 hsa-miR-15b-3p 0 0 1
chr19:13778079|13778295 hsa-miR-152-5p 0 0 1
chr19:13778079|13778295 hsa-miR-152-3p 0 0 1
chr19:13778079|13778295 hsa-miR-195-5p 0 0 1
chr19:13778079|13778295 hsa-miR-195-3p 0 0 1
chr19:13778079|13778295 hsa-miR-148b-5p 0 0 1
chr19:13778079|13778295 hsa-miR-148b-3p 0 0 1
chr19:13778079|13778295 hsa-miR-424-5p 0 0 1
chr19:13778079|13778295 hsa-miR-424-3p 0 0 1
chr19:13778079|13778295 hsa-miR-497-5p 0 0 1
chr19:13778079|13778295 hsa-miR-497-3p 0 0 1
chr19:13778079|13778295 hsa-miR-596 0 1 1
chr19:13778079|13778295 hsa-miR-873-5p 0 0 1
chr19:13778079|13778295 hsa-miR-873-3p 0 0 1
chr19:13778079|13778295 hsa-miR-1200 0 1 1
chr19:13778079|13778295 hsa-miR-1825 0 0 1
chr19:13778079|13778295 hsa-miR-1224-5p 0 0 1
chr19:13778079|13778295 hsa-miR-486-3p 0 1 1
chr19:13778079|13778295 hsa-miR-1224-3p 1 1 1
chr19:13778079|13778295 hsa-miR-188-3p 0 1 1
chr19:13778079|13778295 hsa-miR-1260 0 0 1
chr19:13778079|13778295 hsa-miR-1280 0 0 1
chr19:13778079|13778295 hsa-miR-16 0 0 1
chr19:13778079|13778295 hsa-miR-1260a 0 1 0
chr19:13778079|13778295 hsa-miR-1281 1 0 0
chr19:13778079|13778295 hsa-miR-1538 1 0 0
chr19:13778079|13778295 hsa-miR-1913 1 0 0
chr19:13778079|13778295 hsa-miR-1260b 0 1 0
chr19:13778079|13778295 hsa-miR-4688 1 1 0
chr19:13778079|13778295 hsa-miR-4767 1 0 0
chr19:13778079|13778295 hsa-miR-5093 1 0 0
chr19:13778079|13778295 hsa-miR-5193 1 1 0
chr19:13778079|13778295 hsa-miR-5695 0 1 0
chr19:13778079|13778295 hsa-miR-5704 0 1 0
chr19:13778079|13778295 hsa-miR-6126 0 1 0
chr19:13778079|13778295 hsa-miR-197-3p 1 0 0
chr19:13778079|13778295 hsa-miR-6749-3p 1 0 0
chr19:13778079|13778295 hsa-miR-210-5p 1 0 0
chr19:13778079|13778295 hsa-miR-3692-3p 0 1 0
chr19:13778079|13778295 hsa-miR-224-5p 0 1 0
chr19:13778079|13778295 hsa-miR-874-5p 0 1 0
chr19:13778079|13778295 hsa-miR-6841-3p 0 1 0
chr19:13778079|13778295 hsa-miR-6845-3p 1 0 0
chr19:13778079|13778295 hsa-miR-4793-3p 0 1 0
chr19:13778079|13778295 hsa-miR-6882-3p 1 0 0
chr19:13778079|13778295 hsa-miR-6788-3p 1 0 0
chr19:13778079|13778295 hsa-miR-6858-3p 0 1 0
chr19:13778079|13778295 hsa-miR-1226-5p 0 1 0
chr19:13778079|13778295 hsa-miR-4763-5p 0 1 0
chr19:13778079|13778295 hsa-miR-4786-3p 0 1 0
chr19:13778079|13778295 hsa-miR-1908-3p 1 0 0
chr19:13778079|13778295 hsa-miR-485-5p 0 1 0
chr19:13778079|13778295 hsa-miR-4640-3p 1 1 0
chr19:13778079|13778295 hsa-miR-7156-3p 1 0 0
chr19:13778079|13778295 hsa-miR-1306-5p 0 1 0
chr19:13778079|13778295 hsa-miR-4999-5p 0 1 0
chr19:13778079|13778295 hsa-miR-4632-3p 1 0 0
chr19:13778079|13778295 hsa-miR-6746-3p 1 1 0
chr19:13778079|13778295 hsa-miR-1296-5p 1 0 0
chr19:13778079|13778295 hsa-miR-302c-5p 1 0 0
chr19:13778079|13778295 hsa-miR-1227-3p 1 0 0
chr19:13778079|13778295 hsa-miR-4433a-5p 1 1 0
chr19:13778079|13778295 hsa-miR-1229-3p 1 0 0
chr19:13778079|13778295 hsa-miR-6800-3p 1 0 0
chr19:13778079|13778295 hsa-miR-6851-5p 1 0 0
chr19:13778079|13778295 hsa-miR-6856-5p 0 1 0
chr19:13778079|13778295 hsa-miR-6791-3p 1 0 0
chr19:13778079|13778295 hsa-miR-324-3p 1 0 0
chr19:13778079|13778295 hsa-miR-6727-3p 1 0 0
chr19:13778079|13778295 hsa-miR-6893-3p 1 0 0
chr19:13778079|13778295 hsa-miR-9851-5p 0 1 0
chr19:13778079|13778295 hsa-miR-6792-3p 0 1 0
chr19:13778079|13778295 hsa-miR-6810-3p 1 0 0
chr19:13778079|13778295 hsa-miR-6829-3p 1 0 0
chr19:13778079|13778295 hsa-miR-4691-5p 0 1 0
chr19:13778079|13778295 hsa-miR-6838-5p 0 1 0
chr19:13778079|13778295 hsa-miR-6811-5p 0 1 0
chr19:13778079|13778295 hsa-miR-506-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:13778079|13778295
ORF Type ORF1
Protein Length 55
Nucleotide Length 165
Protein Sequence MEVGGGMLACTGASVLRKVSWRRWRQLPLSSWLGPSAVPASWAGCCWLSSPRHVR
Nucleotide Sequence ATGGAGGTAGGGGGTGGGATGTTGGCCTGCACTGGGGCCAGCGTCCTCAGGAAGGTGTCTTGGAGGAGGTGGCGGCAGCTGCCCCTTTCTTCTTGGCTGGGGCCTTCAGCAGTGCCAGCTTCTTGGGCAGGCTGCTGCTGGCTTTCATCACCACGTCATGTTCGA
CircID chr19:13778079|13778295
ORF Type ORF2
Protein Length 45
Nucleotide Length 135
Protein Sequence MGPASSGRCLGGGGGSCPFLLGWGLQQCQLLGQAAAGFHHHVMFD
Nucleotide Sequence CTGGGGCCAGCGTCCTCAGGAAGGTGTCTTGGAGGAGGTGGCGGCAGCTGCCCCTTTCTTCTTGGCTGGGGCCTTCAGCAGTGCCAGCTTCTTGGGCAGGCTGCTGCTGGCTTTCATCACCACGTCATGTTCGAT
CircID chr19:13778079|13778295
ORF Type ORF3
Protein Length 61
Nucleotide Length 183
Protein Sequence MTCKVPYGGRGWDVGLHWGQRPQEGVLEEVAAAAPFFLAGAFSSASFLGRLLLAFITTSCS
Nucleotide Sequence ATGACTTGCAAGGTCCCATATGGAGGTAGGGGGTGGGATGTTGGCCTGCACTGGGGCCAGCGTCCTCAGGAAGGTGTCTTGGAGGAGGTGGCGGCAGCTGCCCCTTTCTTCTTGGCTGGGGCCTTCAGCAGTGCCAGCTTCTTGGGCAGGCTGCTGCTGGCTTTCATCACCACGTCATGTTCG
CircID chr19:13778079|13778295
ORF Type ORF4
Protein Length 33
Nucleotide Length 102
Protein Sequence MKASSSLPKKLALLKAPAKKKGAAAATSSKTPS
Nucleotide Sequence ATGAAAGCCAGCAGCAGCCTGCCCAAGAAGCTGGCACTGCTGAAGGCCCCAGCCAAGAAGAAAGGGGCAGCTGCCGCCACCTCCTCCAAGACACCTTCCTGA
CircID chr19:13778079|13778295
ORF Type ORF5
Protein Length 43
Nucleotide Length 129
Protein Sequence MPPPPPRHLPEDAGPSAGQHPTPYLHMGPCKSSHRLHCQEEDP
Nucleotide Sequence CTGCCGCCACCTCCTCCAAGACACCTTCCTGAGGACGCTGGCCCCAGTGCAGGCCAACATCCCACCCCCTACCTCCATATGGGACCTTGCAAGTCATCCCACAGGCTGCACTGTCAGGAAGAGGACCCT
CircID chr19:13778079|13778295
ORF Type ORF6
Protein Length 33
Nucleotide Length 99
Protein Sequence MRTLAPVQANIPPPTSIWDLASHPTGCTVRKRT
Nucleotide Sequence CTGAGGACGCTGGCCCCAGTGCAGGCCAACATCCCACCCCCTACCTCCATATGGGACCTTGCAAGTCATCCCACAGGCTGCACTGTCAGGAAGAGGACC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab