CircRNA Information

General Information
circRNA Basic Information
CircID chr19:13778086|13778251
Strand -
CircType exon
Host Gene ENSG00000104979.7;
Algorism CIRI2;
Sequence ATGACGTGGTGATGAAAGCCAGCAGCAGCCTGCCCAAGAAGCTGGCACTGCTGAAGGCCCCAGCCAAGAAGAAAGGGGCAGCTGCCGCCACCTCCTCCAAGACACCTTCCTGAGGACGCTGGCCCCAGTGCAGGCCAACATCCCACCCCCTACCTCCATATGGGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:13778086|13778251 hsa-let-7b-5p 0 0 1
chr19:13778086|13778251 hsa-let-7b-3p 0 0 1
chr19:13778086|13778251 hsa-let-7c-5p 0 0 1
chr19:13778086|13778251 hsa-let-7c-3p 0 0 1
chr19:13778086|13778251 hsa-let-7d-5p 0 0 1
chr19:13778086|13778251 hsa-let-7d-3p 0 0 1
chr19:13778086|13778251 hsa-let-7e-5p 0 0 1
chr19:13778086|13778251 hsa-let-7e-3p 0 0 1
chr19:13778086|13778251 hsa-miR-22-5p 0 0 1
chr19:13778086|13778251 hsa-miR-22-3p 0 0 1
chr19:13778086|13778251 hsa-miR-98-5p 0 0 1
chr19:13778086|13778251 hsa-miR-98-3p 0 0 1
chr19:13778086|13778251 hsa-miR-197-5p 0 0 1
chr19:13778086|13778251 hsa-miR-197-3p 0 0 1
chr19:13778086|13778251 hsa-miR-214-5p 0 0 1
chr19:13778086|13778251 hsa-miR-214-3p 0 0 1
chr19:13778086|13778251 hsa-let-7g-5p 0 0 1
chr19:13778086|13778251 hsa-let-7g-3p 0 0 1
chr19:13778086|13778251 hsa-let-7i-5p 0 0 1
chr19:13778086|13778251 hsa-let-7i-3p 0 0 1
chr19:13778086|13778251 hsa-miR-431-5p 0 0 1
chr19:13778086|13778251 hsa-miR-431-3p 0 0 1
chr19:13778086|13778251 hsa-miR-432-5p 0 0 1
chr19:13778086|13778251 hsa-miR-432-3p 0 0 1
chr19:13778086|13778251 hsa-miR-598-5p 0 0 1
chr19:13778086|13778251 hsa-miR-598-3p 0 0 1
chr19:13778086|13778251 hsa-miR-608 1 1 1
chr19:13778086|13778251 hsa-miR-635 0 0 1
chr19:13778086|13778251 hsa-miR-647 0 0 1
chr19:13778086|13778251 hsa-miR-765 0 0 1
chr19:13778086|13778251 hsa-miR-873-5p 0 0 1
chr19:13778086|13778251 hsa-miR-873-3p 0 0 1
chr19:13778086|13778251 hsa-miR-922 0 0 1
chr19:13778086|13778251 hsa-miR-1202 0 1 1
chr19:13778086|13778251 hsa-miR-324-3p 0 0 1
chr19:13778086|13778251 hsa-miR-220b 0 0 1
chr19:13778086|13778251 hsa-let-7a 0 0 1
chr19:13778086|13778251 hsa-let-7f 0 0 1
chr19:13778086|13778251 hsa-miR-768-5p 0 0 1
chr19:13778086|13778251 hsa-miR-612 0 1 0
chr19:13778086|13778251 hsa-miR-637 1 0 0
chr19:13778086|13778251 hsa-miR-762 1 0 0
chr19:13778086|13778251 hsa-miR-2861 1 0 0
chr19:13778086|13778251 hsa-miR-3196 1 0 0
chr19:13778086|13778251 hsa-miR-4270 1 0 0
chr19:13778086|13778251 hsa-miR-4458 0 1 0
chr19:13778086|13778251 hsa-miR-4467 1 0 0
chr19:13778086|13778251 hsa-miR-4476 0 1 0
chr19:13778086|13778251 hsa-miR-4488 1 0 0
chr19:13778086|13778251 hsa-miR-4519 0 1 0
chr19:13778086|13778251 hsa-miR-4534 1 0 0
chr19:13778086|13778251 hsa-miR-3960 1 0 0
chr19:13778086|13778251 hsa-miR-4651 1 1 0
chr19:13778086|13778251 hsa-miR-4739 1 0 0
chr19:13778086|13778251 hsa-miR-5787 1 1 0
chr19:13778086|13778251 hsa-miR-103a-2-5p 0 1 0
chr19:13778086|13778251 hsa-miR-4731-5p 0 1 0
chr19:13778086|13778251 hsa-miR-6825-5p 1 0 0
chr19:13778086|13778251 hsa-miR-1227-5p 1 1 0
chr19:13778086|13778251 hsa-miR-7114-5p 1 0 0
chr19:13778086|13778251 hsa-miR-6880-5p 1 0 0
chr19:13778086|13778251 hsa-miR-6820-5p 1 0 0
chr19:13778086|13778251 hsa-miR-6762-3p 0 1 0
chr19:13778086|13778251 hsa-miR-6742-5p 1 0 0
chr19:13778086|13778251 hsa-miR-6871-5p 1 0 0
chr19:13778086|13778251 hsa-miR-6732-5p 1 1 0
chr19:13778086|13778251 hsa-miR-6805-5p 1 0 0
chr19:13778086|13778251 hsa-miR-6782-5p 1 0 0
chr19:13778086|13778251 hsa-miR-4793-3p 0 1 0
chr19:13778086|13778251 hsa-miR-6882-3p 1 1 0
chr19:13778086|13778251 hsa-miR-6786-5p 1 0 0
chr19:13778086|13778251 hsa-miR-7109-5p 1 0 0
chr19:13778086|13778251 hsa-miR-1229-5p 1 0 0
chr19:13778086|13778251 hsa-miR-5580-5p 0 1 0
chr19:13778086|13778251 hsa-miR-4787-5p 1 0 0
chr19:13778086|13778251 hsa-miR-149-3p 1 0 0
chr19:13778086|13778251 hsa-miR-6824-5p 1 0 0
chr19:13778086|13778251 hsa-miR-7112-5p 1 0 0
chr19:13778086|13778251 hsa-miR-6770-3p 0 1 0
chr19:13778086|13778251 hsa-miR-506-5p 1 0 0
chr19:13778086|13778251 hsa-miR-10400-5p 1 0 0
chr19:13778086|13778251 hsa-miR-4763-3p 1 0 0
chr19:13778086|13778251 hsa-miR-6769b-5p 1 0 0
chr19:13778086|13778251 hsa-miR-6787-5p 1 0 0
chr19:13778086|13778251 hsa-miR-6893-5p 1 0 0
chr19:13778086|13778251 hsa-miR-6737-5p 1 0 0
chr19:13778086|13778251 hsa-miR-6752-5p 1 0 0
chr19:13778086|13778251 hsa-miR-6754-5p 1 1 0
chr19:13778086|13778251 hsa-miR-6756-5p 1 0 0
chr19:13778086|13778251 hsa-miR-6803-5p 1 1 0
chr19:13778086|13778251 hsa-miR-6815-5p 0 1 0
chr19:13778086|13778251 hsa-miR-6819-5p 1 0 0
chr19:13778086|13778251 hsa-miR-6842-5p 0 1 0
chr19:13778086|13778251 hsa-miR-6851-5p 1 1 0
chr19:13778086|13778251 hsa-miR-7110-5p 1 0 0
chr19:13778086|13778251 hsa-miR-11181-3p 0 1 0
chr19:13778086|13778251 hsa-miR-1249-5p 1 0 0
chr19:13778086|13778251 hsa-miR-6751-5p 1 0 0
chr19:13778086|13778251 hsa-miR-6774-5p 0 1 0
chr19:13778086|13778251 hsa-miR-6808-5p 1 0 0
chr19:13778086|13778251 hsa-miR-3620-5p 1 0 0
chr19:13778086|13778251 hsa-miR-5196-5p 1 0 0
chr19:13778086|13778251 hsa-miR-6780b-5p 1 0 0
chr19:13778086|13778251 hsa-miR-1237-5p 1 0 0
chr19:13778086|13778251 hsa-miR-6794-5p 1 0 0
chr19:13778086|13778251 hsa-miR-6848-5p 1 0 0
chr19:13778086|13778251 hsa-miR-6858-5p 1 1 0
chr19:13778086|13778251 hsa-miR-365b-5p 1 0 0
chr19:13778086|13778251 hsa-miR-3940-5p 1 0 0
chr19:13778086|13778251 hsa-miR-6876-5p 0 1 0
chr19:13778086|13778251 hsa-miR-4472 1 0 0
chr19:13778086|13778251 hsa-miR-6766-5p 0 1 0
chr19:13778086|13778251 hsa-miR-3619-5p 1 0 0
chr19:13778086|13778251 hsa-miR-103a-1-5p 0 1 0
chr19:13778086|13778251 hsa-miR-135b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr19:13778086|13778251
ORF Type ORF1
Protein Length 28
Nucleotide Length 84
Protein Sequence MPPPPPRHLPEDAGPSAGQHPTPYLHMG
Nucleotide Sequence CTGCCGCCACCTCCTCCAAGACACCTTCCTGAGGACGCTGGCCCCAGTGCAGGCCAACATCCCACCCCCTACCTCCATATGGGA
CircID chr19:13778086|13778251
ORF Type ORF2
Protein Length 33
Nucleotide Length 102
Protein Sequence MKASSSLPKKLALLKAPAKKKGAAAATSSKTPS
Nucleotide Sequence ATGAAAGCCAGCAGCAGCCTGCCCAAGAAGCTGGCACTGCTGAAGGCCCCAGCCAAGAAGAAAGGGGCAGCTGCCGCCACCTCCTCCAAGACACCTTCCTGA
CircID chr19:13778086|13778251
ORF Type ORF3
Protein Length 44
Nucleotide Length 132
Protein Sequence MHWGQRPQEGVLEEVAAAAPFFLAGAFSSASFLGRLLLAFITTS
Nucleotide Sequence CTGCACTGGGGCCAGCGTCCTCAGGAAGGTGTCTTGGAGGAGGTGGCGGCAGCTGCCCCTTTCTTCTTGGCTGGGGCCTTCAGCAGTGCCAGCTTCTTGGGCAGGCTGCTGCTGGCTTTCATCACCACGTCA
CircID chr19:13778086|13778251
ORF Type ORF4
Protein Length 53
Nucleotide Length 159
Protein Sequence MEVGGGMLACTGASVLRKVSWRRWRQLPLSSWLGPSAVPASWAGCCWLSSPRH
Nucleotide Sequence ATGGAGGTAGGGGGTGGGATGTTGGCCTGCACTGGGGCCAGCGTCCTCAGGAAGGTGTCTTGGAGGAGGTGGCGGCAGCTGCCCCTTTCTTCTTGGCTGGGGCCTTCAGCAGTGCCAGCTTCTTGGGCAGGCTGCTGCTGGCTTTCATCACCACGTCAT
CircID chr19:13778086|13778251
ORF Type ORF5
Protein Length 42
Nucleotide Length 126
Protein Sequence MGPASSGRCLGGGGGSCPFLLGWGLQQCQLLGQAAAGFHHHV
Nucleotide Sequence CTGGGGCCAGCGTCCTCAGGAAGGTGTCTTGGAGGAGGTGGCGGCAGCTGCCCCTTTCTTCTTGGCTGGGGCCTTCAGCAGTGCCAGCTTCTTGGGCAGGCTGCTGCTGGCTTTCATCACCACGTC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab