CircRNA Information

General Information
circRNA Basic Information
CircID chr19:13778252|13778447
Strand -
CircType exon
Host Gene ENSG00000104979.7;
Algorism CIRI2;
Sequence CTTGCAAGTCATCCCACAGGCTGCACTGTCAGGAAGAGGACCCTGTCCCCCAGCACTGGGCTTCACCTAGAACTTCAGTGGGGGCCAAGGGTGCTGAGAACCCAGCAATGACCAGGAAGATACAGTCACTAACTTCATCTGTCCCCGTGCCCCTTCCCAGGTCCTGCCTCCACAGGTTTAACCCAGAACAATAAAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:13778252|13778447 hsa-miR-148a-5p 0 0 1
chr19:13778252|13778447 hsa-miR-148a-3p 0 0 1
chr19:13778252|13778447 hsa-miR-152-5p 0 0 1
chr19:13778252|13778447 hsa-miR-152-3p 0 0 1
chr19:13778252|13778447 hsa-miR-134-5p 0 0 1
chr19:13778252|13778447 hsa-miR-134-3p 0 0 1
chr19:13778252|13778447 hsa-miR-328-5p 0 0 1
chr19:13778252|13778447 hsa-miR-328-3p 0 0 1
chr19:13778252|13778447 hsa-miR-148b-5p 0 0 1
chr19:13778252|13778447 hsa-miR-148b-3p 0 0 1
chr19:13778252|13778447 hsa-miR-492 0 0 1
chr19:13778252|13778447 hsa-miR-564 1 1 1
chr19:13778252|13778447 hsa-miR-616-5p 0 0 1
chr19:13778252|13778447 hsa-miR-616-3p 0 0 1
chr19:13778252|13778447 hsa-miR-625-5p 0 0 1
chr19:13778252|13778447 hsa-miR-625-3p 0 0 1
chr19:13778252|13778447 hsa-miR-631 0 0 1
chr19:13778252|13778447 hsa-miR-637 0 1 1
chr19:13778252|13778447 hsa-miR-649 0 0 1
chr19:13778252|13778447 hsa-miR-650 0 0 1
chr19:13778252|13778447 hsa-miR-921 0 0 1
chr19:13778252|13778447 hsa-miR-940 0 1 1
chr19:13778252|13778447 hsa-miR-943 0 0 1
chr19:13778252|13778447 hsa-miR-1236-5p 0 0 1
chr19:13778252|13778447 hsa-miR-1236-3p 0 0 1
chr19:13778252|13778447 hsa-miR-1200 0 0 1
chr19:13778252|13778447 hsa-miR-1286 0 0 1
chr19:13778252|13778447 hsa-miR-1275 0 1 1
chr19:13778252|13778447 hsa-miR-1825 0 0 1
chr19:13778252|13778447 hsa-miR-1827 0 0 1
chr19:13778252|13778447 hsa-miR-512-3p 0 0 1
chr19:13778252|13778447 hsa-miR-663a 1 0 0
chr19:13778252|13778447 hsa-miR-762 1 0 0
chr19:13778252|13778447 hsa-miR-2861 1 0 0
chr19:13778252|13778447 hsa-miR-3138 1 0 0
chr19:13778252|13778447 hsa-miR-3154 1 0 0
chr19:13778252|13778447 hsa-miR-3175 1 0 0
chr19:13778252|13778447 hsa-miR-4298 1 0 0
chr19:13778252|13778447 hsa-miR-3612 0 1 0
chr19:13778252|13778447 hsa-miR-3660 0 1 0
chr19:13778252|13778447 hsa-miR-3661 1 1 0
chr19:13778252|13778447 hsa-miR-3909 0 1 0
chr19:13778252|13778447 hsa-miR-3936 1 1 0
chr19:13778252|13778447 hsa-miR-3945 1 0 0
chr19:13778252|13778447 hsa-miR-1268b 1 0 0
chr19:13778252|13778447 hsa-miR-4507 1 0 0
chr19:13778252|13778447 hsa-miR-4688 1 0 0
chr19:13778252|13778447 hsa-miR-4706 1 0 0
chr19:13778252|13778447 hsa-miR-5090 1 0 0
chr19:13778252|13778447 hsa-miR-5787 1 0 0
chr19:13778252|13778447 hsa-miR-6085 1 0 0
chr19:13778252|13778447 hsa-miR-8085 1 0 0
chr19:13778252|13778447 hsa-miR-8089 1 0 0
chr19:13778252|13778447 hsa-miR-12127 1 0 0
chr19:13778252|13778447 hsa-miR-103a-2-5p 0 1 0
chr19:13778252|13778447 hsa-miR-141-5p 0 1 0
chr19:13778252|13778447 hsa-miR-4731-5p 0 1 0
chr19:13778252|13778447 hsa-miR-6765-5p 1 0 0
chr19:13778252|13778447 hsa-miR-212-5p 0 1 0
chr19:13778252|13778447 hsa-miR-6861-5p 1 0 0
chr19:13778252|13778447 hsa-miR-3622a-5p 1 0 0
chr19:13778252|13778447 hsa-miR-7851-3p 1 0 0
chr19:13778252|13778447 hsa-miR-7114-5p 1 1 0
chr19:13778252|13778447 hsa-miR-6089 1 0 0
chr19:13778252|13778447 hsa-miR-7847-3p 1 0 0
chr19:13778252|13778447 hsa-miR-4695-5p 1 0 0
chr19:13778252|13778447 hsa-miR-6730-5p 1 0 0
chr19:13778252|13778447 hsa-miR-1301-3p 1 1 0
chr19:13778252|13778447 hsa-miR-6890-5p 1 0 0
chr19:13778252|13778447 hsa-miR-6875-3p 1 0 0
chr19:13778252|13778447 hsa-miR-6727-5p 1 0 0
chr19:13778252|13778447 hsa-miR-3622b-5p 1 0 0
chr19:13778252|13778447 hsa-miR-4655-5p 1 0 0
chr19:13778252|13778447 hsa-miR-5589-5p 0 1 0
chr19:13778252|13778447 hsa-miR-6776-5p 1 0 0
chr19:13778252|13778447 hsa-miR-7845-5p 1 0 0
chr19:13778252|13778447 hsa-miR-3151-5p 1 0 0
chr19:13778252|13778447 hsa-miR-1292-5p 1 0 0
chr19:13778252|13778447 hsa-miR-4697-3p 1 0 0
chr19:13778252|13778447 hsa-miR-6798-5p 1 0 0
chr19:13778252|13778447 hsa-miR-6810-5p 1 0 0
chr19:13778252|13778447 hsa-miR-5008-5p 1 0 0
chr19:13778252|13778447 hsa-miR-1226-5p 1 0 0
chr19:13778252|13778447 hsa-miR-204-3p 1 1 0
chr19:13778252|13778447 hsa-miR-1229-5p 1 0 0
chr19:13778252|13778447 hsa-miR-4783-3p 1 1 0
chr19:13778252|13778447 hsa-miR-4640-5p 1 0 0
chr19:13778252|13778447 hsa-miR-1908-5p 1 0 0
chr19:13778252|13778447 hsa-miR-1228-5p 1 0 0
chr19:13778252|13778447 hsa-miR-6771-5p 1 0 0
chr19:13778252|13778447 hsa-miR-92b-5p 1 0 0
chr19:13778252|13778447 hsa-miR-6749-5p 1 0 0
chr19:13778252|13778447 hsa-miR-3648 1 0 0
chr19:13778252|13778447 hsa-miR-149-3p 1 0 0
chr19:13778252|13778447 hsa-miR-378a-5p 0 1 0
chr19:13778252|13778447 hsa-miR-6800-5p 0 1 0
chr19:13778252|13778447 hsa-miR-146b-3p 1 0 0
chr19:13778252|13778447 hsa-miR-7156-3p 0 1 0
chr19:13778252|13778447 hsa-miR-7112-5p 1 0 0
chr19:13778252|13778447 hsa-miR-1225-5p 1 0 0
chr19:13778252|13778447 hsa-miR-6871-3p 1 1 0
chr19:13778252|13778447 hsa-miR-216a-3p 0 1 0
chr19:13778252|13778447 hsa-miR-3617-3p 0 1 0
chr19:13778252|13778447 hsa-miR-1207-5p 1 0 0
chr19:13778252|13778447 hsa-miR-1233-5p 1 0 0
chr19:13778252|13778447 hsa-miR-4763-3p 1 1 0
chr19:13778252|13778447 hsa-miR-6787-5p 1 0 0
chr19:13778252|13778447 hsa-miR-6812-5p 1 0 0
chr19:13778252|13778447 hsa-miR-6816-5p 1 0 0
chr19:13778252|13778447 hsa-miR-6870-5p 1 0 0
chr19:13778252|13778447 hsa-miR-6893-5p 0 1 0
chr19:13778252|13778447 hsa-miR-6775-5p 0 1 0
chr19:13778252|13778447 hsa-miR-1343-5p 1 0 0
chr19:13778252|13778447 hsa-miR-6743-5p 1 1 0
chr19:13778252|13778447 hsa-miR-6756-5p 1 0 0
chr19:13778252|13778447 hsa-miR-6813-5p 1 0 0
chr19:13778252|13778447 hsa-miR-6851-5p 1 0 0
chr19:13778252|13778447 hsa-miR-7107-5p 1 0 0
chr19:13778252|13778447 hsa-miR-1249-5p 1 0 0
chr19:13778252|13778447 hsa-miR-6763-5p 1 0 0
chr19:13778252|13778447 hsa-miR-6779-5p 1 0 0
chr19:13778252|13778447 hsa-miR-6780a-5p 1 0 0
chr19:13778252|13778447 hsa-miR-6808-5p 0 1 0
chr19:13778252|13778447 hsa-miR-4728-5p 1 0 0
chr19:13778252|13778447 hsa-miR-5196-5p 1 1 0
chr19:13778252|13778447 hsa-miR-6780b-5p 1 0 0
chr19:13778252|13778447 hsa-miR-6862-5p 1 0 0
chr19:13778252|13778447 hsa-miR-1237-5p 1 0 0
chr19:13778252|13778447 hsa-miR-1909-3p 1 0 0
chr19:13778252|13778447 hsa-miR-4632-5p 1 0 0
chr19:13778252|13778447 hsa-miR-4685-5p 0 1 0
chr19:13778252|13778447 hsa-miR-4725-3p 1 0 0
chr19:13778252|13778447 hsa-miR-4726-5p 1 0 0
chr19:13778252|13778447 hsa-miR-4749-5p 1 0 0
chr19:13778252|13778447 hsa-miR-6777-5p 1 0 0
chr19:13778252|13778447 hsa-miR-6794-5p 1 0 0
chr19:13778252|13778447 hsa-miR-6795-5p 1 0 0
chr19:13778252|13778447 hsa-miR-6846-5p 1 0 0
chr19:13778252|13778447 hsa-miR-6848-5p 1 0 0
chr19:13778252|13778447 hsa-miR-6858-5p 1 0 0
chr19:13778252|13778447 hsa-miR-6883-5p 1 0 0
chr19:13778252|13778447 hsa-miR-6887-5p 1 0 0
chr19:13778252|13778447 hsa-miR-4769-5p 0 1 0
chr19:13778252|13778447 hsa-miR-10394-3p 1 0 0
chr19:13778252|13778447 hsa-miR-3940-5p 1 0 0
chr19:13778252|13778447 hsa-miR-7843-5p 1 0 0
chr19:13778252|13778447 hsa-miR-4646-5p 1 1 0
chr19:13778252|13778447 hsa-miR-4747-5p 1 1 0
chr19:13778252|13778447 hsa-miR-6785-5p 1 0 0
chr19:13778252|13778447 hsa-miR-103a-1-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:13778252|13778447
ORF Type ORF1
Protein Length 57
Nucleotide Length 174
Protein Sequence MHCQEEDPVPQHWASPRTSVGAKGAENPAMTRKIQSLTSSVPVPLPRSCLHRFNPEQ
Nucleotide Sequence CTGCACTGTCAGGAAGAGGACCCTGTCCCCCAGCACTGGGCTTCACCTAGAACTTCAGTGGGGGCCAAGGGTGCTGAGAACCCAGCAATGACCAGGAAGATACAGTCACTAACTTCATCTGTCCCCGTGCCCCTTCCCAGGTCCTGCCTCCACAGGTTTAACCCAGAACAATAA
CircID chr19:13778252|13778447
ORF Type ORF2
Protein Length 48
Nucleotide Length 147
Protein Sequence MWRQDLGRGTGTDEVSDCIFLVIAGFSAPLAPTEVLGEAQCWGTGSSS
Nucleotide Sequence CTGTGGAGGCAGGACCTGGGAAGGGGCACGGGGACAGATGAAGTTAGTGACTGTATCTTCCTGGTCATTGCTGGGTTCTCAGCACCCTTGGCCCCCACTGAAGTTCTAGGTGAAGCCCAGTGCTGGGGGACAGGGTCCTCTTCCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab