CircRNA Information

General Information
circRNA Basic Information
CircID chr19:14042453|14042789
Strand +
CircType exon
Host Gene ENSG00000104998.3;
Algorism find_circ;CIRI2;DCC;
Sequence CTGGAACCGGAGCTGAAGACCATACCCCTGACCCCTGTTGAGATCCAAGATTTGGAGCTAGCCACTGGCTACAAAGTGTATGGCCGCTGCCGGATGGAGAAAGAAGAGGATTTGTGGGGCGAGTGGAGCCCCATTTTGTCCTTCCAGACACCGCCTTCTGCTCCAAAAGATGTGTGGGTATCAGGGAACCTCTGTGGGACGCCTGGAGGAGAGGAACCTTTGCTTCTATGGAAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:14042453|14042789 hsa-miR-520g-5p 0 0 1
chr19:14042453|14042789 hsa-miR-520g-3p 0 0 1
chr19:14042453|14042789 hsa-miR-520h 0 0 1
chr19:14042453|14042789 hsa-miR-892b 0 0 1
chr19:14042453|14042789 hsa-miR-1237-5p 0 0 1
chr19:14042453|14042789 hsa-miR-1237-3p 0 0 1
chr19:14042453|14042789 hsa-miR-1203 0 0 1
chr19:14042453|14042789 hsa-miR-1267 0 0 1
chr19:14042453|14042789 hsa-miR-1225-3p 0 0 1
chr19:14042453|14042789 hsa-miR-491-5p 0 0 1
chr19:14042453|14042789 hsa-miR-1283 0 0 1
chr19:14042453|14042789 hsa-miR-525-5p 0 0 1
chr19:14042453|14042789 hsa-miR-524-5p 0 0 1
chr19:14042453|14042789 hsa-miR-520a-5p 0 0 1
chr19:14042453|14042789 hsa-miR-520d-5p 0 0 1
chr19:14042453|14042789 hsa-miR-1274b 0 0 1
chr19:14042453|14042789 hsa-miR-768-5p 0 0 1
chr19:14042453|14042789 hsa-miR-765 1 0 0
chr19:14042453|14042789 hsa-miR-3132 1 0 0
chr19:14042453|14042789 hsa-miR-3154 0 1 0
chr19:14042453|14042789 hsa-miR-3166 0 1 0
chr19:14042453|14042789 hsa-miR-3196 1 0 0
chr19:14042453|14042789 hsa-miR-4534 0 1 0
chr19:14042453|14042789 hsa-miR-4739 1 0 0
chr19:14042453|14042789 hsa-miR-5739 1 0 0
chr19:14042453|14042789 hsa-miR-8085 1 0 0
chr19:14042453|14042789 hsa-miR-1287-5p 1 0 0
chr19:14042453|14042789 hsa-miR-6880-5p 1 1 0
chr19:14042453|14042789 hsa-miR-197-5p 1 0 0
chr19:14042453|14042789 hsa-miR-3189-5p 0 1 0
chr19:14042453|14042789 hsa-miR-432-5p 0 1 0
chr19:14042453|14042789 hsa-miR-7108-5p 1 0 0
chr19:14042453|14042789 hsa-miR-3151-5p 0 1 0
chr19:14042453|14042789 hsa-miR-3180-3p 1 0 0
chr19:14042453|14042789 hsa-miR-6796-5p 0 1 0
chr19:14042453|14042789 hsa-miR-6874-5p 0 1 0
chr19:14042453|14042789 hsa-miR-4743-5p 1 1 0
chr19:14042453|14042789 hsa-miR-3160-3p 0 1 0
chr19:14042453|14042789 hsa-miR-4732-3p 0 1 0
chr19:14042453|14042789 hsa-miR-3180-5p 0 1 0
chr19:14042453|14042789 hsa-miR-10a-5p 0 1 0
chr19:14042453|14042789 hsa-miR-6816-5p 1 0 0
chr19:14042453|14042789 hsa-miR-4649-5p 0 1 0
chr19:14042453|14042789 hsa-miR-6729-5p 0 1 0
chr19:14042453|14042789 hsa-miR-1238-5p 0 1 0
chr19:14042453|14042789 hsa-miR-4769-5p 1 0 0
chr19:14042453|14042789 hsa-miR-4633-3p 1 1 0
chr19:14042453|14042789 hsa-miR-6500-5p 0 1 0
chr19:14042453|14042789 hsa-miR-664a-5p 0 1 0
chr19:14042453|14042789 hsa-miR-10b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:14042453|14042789
ORF Type ORF1
Protein Length 51
Nucleotide Length 153
Protein Sequence MAAAGWRKKRICGASGAPFCPSRHRLLLQKMCGYQGTSVGRLEERNLCFYG
Nucleotide Sequence ATGGCCGCTGCCGGATGGAGAAAGAAGAGGATTTGTGGGGCGAGTGGAGCCCCATTTTGTCCTTCCAGACACCGCCTTCTGCTCCAAAAGATGTGTGGGTATCAGGGAACCTCTGTGGGACGCCTGGAGGAGAGGAACCTTTGCTTCTATGGA
CircID chr19:14042453|14042789
ORF Type ORF2
Protein Length 47
Nucleotide Length 141
Protein Sequence MEKEEDLWGEWSPILSFQTPPSAPKDVWVSGNLCGTPGGEEPLLLWK
Nucleotide Sequence ATGGAGAAAGAAGAGGATTTGTGGGGCGAGTGGAGCCCCATTTTGTCCTTCCAGACACCGCCTTCTGCTCCAAAAGATGTGTGGGTATCAGGGAACCTCTGTGGGACGCCTGGAGGAGAGGAACCTTTGCTTCTATGGAAG
CircID chr19:14042453|14042789
ORF Type ORF3
Protein Length 55
Nucleotide Length 165
Protein Sequence LEQKAVSGRTKWGSTRPTNPLLSPSGSGHTLCSQWLAPNLGSQQGSGVWSSAPVP
Nucleotide Sequence TTGGAGCAGAAGGCGGTGTCTGGAAGGACAAAATGGGGCTCCACTCGCCCCACAAATCCTCTTCTTTCTCCATCCGGCAGCGGCCATACACTTTGTAGCCAGTGGCTAGCTCCAAATCTTGGATCTCAACAGGGGTCAGGGGTATGGTCTTCAGCTCCGGTTCCA
CircID chr19:14042453|14042789
ORF Type ORF1
Protein Length 29
Nucleotide Length 90
Protein Sequence MEGQNGAPLAPQILFFLHPAAAIHFVASG
Nucleotide Sequence CTGGAAGGACAAAATGGGGCTCCACTCGCCCCACAAATCCTCTTCTTTCTCCATCCGGCAGCGGCCATACACTTTGTAGCCAGTGGCTAG
CircID chr19:14042453|14042789
ORF Type ORF2
Protein Length 55
Nucleotide Length 165
Protein Sequence LEPELKTIPLTPVEIQDLELATGYKVYGRCRMEKEEDLWGEWSPILSFQTPPSVE
Nucleotide Sequence CTGGAACCGGAGCTGAAGACCATACCCCTGACCCCTGTTGAGATCCAAGATTTGGAGCTAGCCACTGGCTACAAAGTGTATGGCCGCTGCCGGATGGAGAAAGAAGAGGATTTGTGGGGCGAGTGGAGCCCCATTTTGTCCTTCCAGACACCGCCTTCTGTGGAA
CircID chr19:14042453|14042789
ORF Type ORF3
Protein Length 34
Nucleotide Length 102
Protein Sequence MATKCMAAAGWRKKRICGASGAPFCPSRHRLLWK
Nucleotide Sequence CTGGCTACAAAGTGTATGGCCGCTGCCGGATGGAGAAAGAAGAGGATTTGTGGGGCGAGTGGAGCCCCATTTTGTCCTTCCAGACACCGCCTTCTGTGGAAG
CircID chr19:14042453|14042789
ORF Type ORF4
Protein Length 26
Nucleotide Length 78
Protein Sequence MPDGERRGFVGRVEPHFVLPDTAFCG
Nucleotide Sequence CTGCCGGATGGAGAAAGAAGAGGATTTGTGGGGCGAGTGGAGCCCCATTTTGTCCTTCCAGACACCGCCTTCTGTGGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr19:14042453|14042789 ELAVL1 0 2 0
chr19:14042453|14042789 SF3B4 2 0 0
chr19:14042453|14042789 PRPF8 0 0 1
chr19:14042453|14042789 YTHDF1 1 0 0
chr19:14042453|14042789 UPF1 1 0 0
chr19:14042453|14042789 FMR1 1 0 0
chr19:14042453|14042789 CPSF6 1 0 1
chr19:14042453|14042789 NUDT21 0 1 0
chr19:14042453|14042789 CPSF7 1 0 0
chr19:14042453|14042789 SRSF1 2 1 6
chr19:14042453|14042789 NOP58 0 1 0
chr19:14042453|14042789 EIF3B 1 0 0
chr19:14042453|14042789 U2AF2 1 2 0
chr19:14042453|14042789 DDX54 2 0 2
chr19:14042453|14042789 IGF2BP1 2 0 0
chr19:14042453|14042789 PTBP1 4 0 0
chr19:14042453|14042789 HNRNPC 0 1 1
chr19:14042453|14042789 DHX9 0 1 0
chr19:14042453|14042789 DDX3X 8 0 0
chr19:14042453|14042789 LIN28B 1 1 3
chr19:14042453|14042789 SND1 1 1 0
chr19:14042453|14042789 UCHL5 1 0 0
chr19:14042453|14042789 IGF2BP2 0 1 0
chr19:14042453|14042789 TARDBP 2 0 0
chr19:14042453|14042789 BUD13 1 0 0
chr19:14042453|14042789 YTHDF2 1 0 0
chr19:14042453|14042789 CSTF2T 1 1 1
chr19:14042453|14042789 YBX3 2 0 0
chr19:14042453|14042789 ATXN2 1 0 0
chr19:14042453|14042789 EIF4A3 2 0 6
chr19:14042453|14042789 FBL 1 0 0
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab