CircRNA Information

General Information
circRNA Basic Information
CircID chr19:14397887|14398117
Strand -
CircType exon
Host Gene ENSG00000123146.18;
Algorism CIRI2;
Sequence AGATATGACTTTCTCCACCTGGACCCCGCCCCCTGGAGTCCACAGCCAGGTGAGTGGCCCCCACAGGGACGAGGCGGCGGGAACTCCATCCACACAGCACTGCATCCGTCTCCTTGTTCTAAACTTCCCACCCGCCGTCCAGGCTCTCTGACCCCCACATCTCCTCTCTCTGCAGACGCTTTCCCGATTCTTCGACAAAGTCCAGGACCTGGGCAGAGACTCCAAGACAAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:14397887|14398117 hsa-miR-184 0 0 1
chr19:14397887|14398117 hsa-miR-422a 0 1 1
chr19:14397887|14398117 hsa-miR-431-5p 0 0 1
chr19:14397887|14398117 hsa-miR-431-3p 0 0 1
chr19:14397887|14398117 hsa-miR-511-5p 0 0 1
chr19:14397887|14398117 hsa-miR-511-3p 0 0 1
chr19:14397887|14398117 hsa-miR-432-5p 0 0 1
chr19:14397887|14398117 hsa-miR-432-3p 0 0 1
chr19:14397887|14398117 hsa-miR-593-5p 0 0 1
chr19:14397887|14398117 hsa-miR-593-3p 0 0 1
chr19:14397887|14398117 hsa-miR-1205 0 0 1
chr19:14397887|14398117 hsa-miR-512-3p 0 0 1
chr19:14397887|14398117 hsa-miR-491-5p 0 0 1
chr19:14397887|14398117 hsa-miR-615-5p 1 0 1
chr19:14397887|14398117 hsa-miR-299-3p 0 0 1
chr19:14397887|14398117 hsa-miR-339-5p 0 0 1
chr19:14397887|14398117 hsa-miR-1184 0 0 1
chr19:14397887|14398117 hsa-miR-1289 0 0 1
chr19:14397887|14398117 hsa-miR-508-5p 0 1 1
chr19:14397887|14398117 hsa-miR-576-3p 0 0 1
chr19:14397887|14398117 hsa-miR-324-3p 0 0 1
chr19:14397887|14398117 hsa-miR-1274a 0 0 1
chr19:14397887|14398117 hsa-miR-1274b 0 0 1
chr19:14397887|14398117 hsa-miR-378 0 0 1
chr19:14397887|14398117 hsa-miR-644 0 0 1
chr19:14397887|14398117 hsa-miR-1254 0 0 1
chr19:14397887|14398117 hsa-miR-886-3p 0 0 1
chr19:14397887|14398117 hsa-miR-147 0 0 1
chr19:14397887|14398117 hsa-miR-663 0 0 1
chr19:14397887|14398117 hsa-miR-601 1 0 0
chr19:14397887|14398117 hsa-miR-637 1 0 0
chr19:14397887|14398117 hsa-miR-663a 0 1 0
chr19:14397887|14398117 hsa-miR-762 1 0 0
chr19:14397887|14398117 hsa-miR-765 1 0 0
chr19:14397887|14398117 hsa-miR-936 1 0 0
chr19:14397887|14398117 hsa-miR-1268a 1 0 0
chr19:14397887|14398117 hsa-miR-2861 1 1 0
chr19:14397887|14398117 hsa-miR-378b 0 1 0
chr19:14397887|14398117 hsa-miR-3141 1 0 0
chr19:14397887|14398117 hsa-miR-3153 1 1 0
chr19:14397887|14398117 hsa-miR-3185 1 0 0
chr19:14397887|14398117 hsa-miR-378c 0 1 0
chr19:14397887|14398117 hsa-miR-4312 0 1 0
chr19:14397887|14398117 hsa-miR-4322 1 1 0
chr19:14397887|14398117 hsa-miR-4270 1 0 0
chr19:14397887|14398117 hsa-miR-4281 1 0 0
chr19:14397887|14398117 hsa-miR-3911 0 1 0
chr19:14397887|14398117 hsa-miR-1268b 1 0 0
chr19:14397887|14398117 hsa-miR-378f 0 1 0
chr19:14397887|14398117 hsa-miR-4428 1 1 0
chr19:14397887|14398117 hsa-miR-4447 0 1 0
chr19:14397887|14398117 hsa-miR-378h 0 1 0
chr19:14397887|14398117 hsa-miR-4466 1 0 0
chr19:14397887|14398117 hsa-miR-4488 1 1 0
chr19:14397887|14398117 hsa-miR-4489 1 0 0
chr19:14397887|14398117 hsa-miR-4519 1 0 0
chr19:14397887|14398117 hsa-miR-4527 1 1 0
chr19:14397887|14398117 hsa-miR-3960 1 0 0
chr19:14397887|14398117 hsa-miR-4651 1 0 0
chr19:14397887|14398117 hsa-miR-4689 1 0 0
chr19:14397887|14398117 hsa-miR-4706 1 0 0
chr19:14397887|14398117 hsa-miR-4721 1 0 0
chr19:14397887|14398117 hsa-miR-4734 1 0 0
chr19:14397887|14398117 hsa-miR-4739 1 1 0
chr19:14397887|14398117 hsa-miR-4784 1 1 0
chr19:14397887|14398117 hsa-miR-5091 1 0 0
chr19:14397887|14398117 hsa-miR-5698 1 0 0
chr19:14397887|14398117 hsa-miR-5739 1 0 0
chr19:14397887|14398117 hsa-miR-6081 1 0 0
chr19:14397887|14398117 hsa-miR-6127 1 0 0
chr19:14397887|14398117 hsa-miR-6132 1 0 0
chr19:14397887|14398117 hsa-miR-6133 1 1 0
chr19:14397887|14398117 hsa-miR-7704 1 0 0
chr19:14397887|14398117 hsa-miR-8058 0 1 0
chr19:14397887|14398117 hsa-miR-8085 1 0 0
chr19:14397887|14398117 hsa-miR-8089 1 0 0
chr19:14397887|14398117 hsa-miR-12128 1 0 0
chr19:14397887|14398117 hsa-miR-134-3p 0 1 0
chr19:14397887|14398117 hsa-miR-143-5p 1 0 0
chr19:14397887|14398117 hsa-miR-4433b-3p 1 0 0
chr19:14397887|14398117 hsa-miR-6734-5p 1 0 0
chr19:14397887|14398117 hsa-miR-6765-5p 1 0 0
chr19:14397887|14398117 hsa-miR-6825-5p 1 0 0
chr19:14397887|14398117 hsa-miR-6894-5p 1 0 0
chr19:14397887|14398117 hsa-miR-4687-3p 1 0 0
chr19:14397887|14398117 hsa-miR-6799-5p 1 0 0
chr19:14397887|14398117 hsa-miR-8071 1 0 0
chr19:14397887|14398117 hsa-miR-139-3p 1 1 0
chr19:14397887|14398117 hsa-miR-6833-5p 1 0 0
chr19:14397887|14398117 hsa-miR-7114-5p 1 1 0
chr19:14397887|14398117 hsa-miR-3192-5p 1 0 0
chr19:14397887|14398117 hsa-miR-6880-5p 0 1 0
chr19:14397887|14398117 hsa-miR-6746-5p 1 0 0
chr19:14397887|14398117 hsa-miR-6759-5p 1 0 0
chr19:14397887|14398117 hsa-miR-4655-5p 1 0 0
chr19:14397887|14398117 hsa-miR-197-5p 1 0 0
chr19:14397887|14398117 hsa-miR-1292-5p 1 0 0
chr19:14397887|14398117 hsa-miR-3180-3p 1 1 0
chr19:14397887|14398117 hsa-miR-6748-5p 1 1 0
chr19:14397887|14398117 hsa-miR-6796-5p 1 1 0
chr19:14397887|14398117 hsa-miR-6805-5p 1 1 0
chr19:14397887|14398117 hsa-miR-6798-5p 0 1 0
chr19:14397887|14398117 hsa-miR-6760-5p 1 1 0
chr19:14397887|14398117 hsa-miR-2467-3p 1 0 0
chr19:14397887|14398117 hsa-miR-6782-5p 1 0 0
chr19:14397887|14398117 hsa-miR-6765-3p 0 1 0
chr19:14397887|14398117 hsa-miR-3150b-3p 1 1 0
chr19:14397887|14398117 hsa-miR-6786-5p 1 0 0
chr19:14397887|14398117 hsa-miR-7109-5p 1 0 0
chr19:14397887|14398117 hsa-miR-204-3p 1 0 0
chr19:14397887|14398117 hsa-miR-4640-5p 1 0 0
chr19:14397887|14398117 hsa-miR-1228-5p 1 0 0
chr19:14397887|14398117 hsa-let-7b-5p 1 0 0
chr19:14397887|14398117 hsa-miR-92b-5p 1 1 0
chr19:14397887|14398117 hsa-miR-4732-5p 1 0 0
chr19:14397887|14398117 hsa-miR-6749-5p 1 0 0
chr19:14397887|14398117 hsa-miR-425-3p 0 1 0
chr19:14397887|14398117 hsa-miR-3690 0 1 0
chr19:14397887|14398117 hsa-miR-149-3p 1 0 0
chr19:14397887|14398117 hsa-miR-6717-5p 1 0 0
chr19:14397887|14398117 hsa-miR-6824-5p 1 0 0
chr19:14397887|14398117 hsa-miR-3162-5p 1 0 0
chr19:14397887|14398117 hsa-miR-146b-3p 0 1 0
chr19:14397887|14398117 hsa-miR-3158-5p 1 1 0
chr19:14397887|14398117 hsa-miR-6781-5p 1 0 0
chr19:14397887|14398117 hsa-miR-6499-3p 1 0 0
chr19:14397887|14398117 hsa-miR-873-3p 1 0 0
chr19:14397887|14398117 hsa-miR-6720-3p 1 0 0
chr19:14397887|14398117 hsa-miR-1910-5p 1 0 0
chr19:14397887|14398117 hsa-miR-6832-5p 1 0 0
chr19:14397887|14398117 hsa-miR-6801-5p 0 1 0
chr19:14397887|14398117 hsa-miR-4746-3p 1 0 0
chr19:14397887|14398117 hsa-miR-7113-5p 1 0 0
chr19:14397887|14398117 hsa-miR-1207-5p 1 0 0
chr19:14397887|14398117 hsa-miR-1233-5p 1 0 0
chr19:14397887|14398117 hsa-miR-1273h-5p 1 0 0
chr19:14397887|14398117 hsa-miR-6769b-5p 1 1 0
chr19:14397887|14398117 hsa-miR-6778-5p 1 0 0
chr19:14397887|14398117 hsa-miR-6787-5p 0 1 0
chr19:14397887|14398117 hsa-miR-6816-5p 1 1 0
chr19:14397887|14398117 hsa-miR-1343-5p 1 0 0
chr19:14397887|14398117 hsa-miR-3180 0 1 0
chr19:14397887|14398117 hsa-miR-6752-5p 1 0 0
chr19:14397887|14398117 hsa-miR-6754-5p 1 1 0
chr19:14397887|14398117 hsa-miR-6756-5p 1 1 0
chr19:14397887|14398117 hsa-miR-6803-5p 1 1 0
chr19:14397887|14398117 hsa-miR-6813-5p 1 0 0
chr19:14397887|14398117 hsa-miR-6819-5p 1 0 0
chr19:14397887|14398117 hsa-miR-6851-5p 1 0 0
chr19:14397887|14398117 hsa-miR-7107-5p 1 0 0
chr19:14397887|14398117 hsa-miR-7110-5p 1 0 0
chr19:14397887|14398117 hsa-miR-10401-5p 1 0 0
chr19:14397887|14398117 hsa-miR-1249-5p 1 0 0
chr19:14397887|14398117 hsa-miR-6751-5p 1 0 0
chr19:14397887|14398117 hsa-miR-6763-5p 1 0 0
chr19:14397887|14398117 hsa-miR-6780a-5p 1 0 0
chr19:14397887|14398117 hsa-miR-6797-5p 1 0 0
chr19:14397887|14398117 hsa-miR-5196-5p 1 0 0
chr19:14397887|14398117 hsa-miR-6780b-5p 1 1 0
chr19:14397887|14398117 hsa-miR-10396b-5p 1 0 0
chr19:14397887|14398117 hsa-miR-1237-5p 1 1 0
chr19:14397887|14398117 hsa-miR-328-5p 1 0 0
chr19:14397887|14398117 hsa-miR-4649-5p 1 0 0
chr19:14397887|14398117 hsa-miR-4725-3p 1 0 0
chr19:14397887|14398117 hsa-miR-4726-5p 1 0 0
chr19:14397887|14398117 hsa-miR-4745-5p 1 0 0
chr19:14397887|14398117 hsa-miR-6777-5p 1 0 0
chr19:14397887|14398117 hsa-miR-6846-5p 1 0 0
chr19:14397887|14398117 hsa-miR-6848-5p 1 0 0
chr19:14397887|14398117 hsa-miR-6883-5p 1 0 0
chr19:14397887|14398117 hsa-miR-6889-5p 1 0 0
chr19:14397887|14398117 hsa-miR-939-5p 1 0 0
chr19:14397887|14398117 hsa-miR-6511b-5p 1 0 0
chr19:14397887|14398117 hsa-miR-6731-5p 1 0 0
chr19:14397887|14398117 hsa-miR-6758-5p 1 1 0
chr19:14397887|14398117 hsa-miR-6856-5p 1 1 0
chr19:14397887|14398117 hsa-miR-4665-5p 1 0 0
chr19:14397887|14398117 hsa-miR-4646-5p 1 0 0
chr19:14397887|14398117 hsa-miR-6876-5p 1 0 0
chr19:14397887|14398117 hsa-miR-6891-5p 1 0 0
chr19:14397887|14398117 hsa-miR-378a-3p 0 1 0
chr19:14397887|14398117 hsa-miR-4667-5p 1 0 0
chr19:14397887|14398117 hsa-miR-6762-5p 0 1 0
chr19:14397887|14398117 hsa-miR-5009-5p 0 1 0
chr19:14397887|14398117 hsa-miR-10400-3p 1 0 0
chr19:14397887|14398117 hsa-miR-6504-5p 0 1 0
chr19:14397887|14398117 hsa-miR-378d 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr19:14397887|14398117
ORF Type ORF1
Protein Length 71
Nucleotide Length 213
Protein Sequence MDPAPWSPQPGEWPPQGRGGGNSIHTALHPSPCSKLPTRRPGSLTPTSPLSADAFPILRQSPGPGQRLQDK
Nucleotide Sequence CTGGACCCCGCCCCCTGGAGTCCACAGCCAGGTGAGTGGCCCCCACAGGGACGAGGCGGCGGGAACTCCATCCACACAGCACTGCATCCGTCTCCTTGTTCTAAACTTCCCACCCGCCGTCCAGGCTCTCTGACCCCCACATCTCCTCTCTCTGCAGACGCTTTCCCGATTCTTCGACAAAGTCCAGGACCTGGGCAGAGACTCCAAGACAAG
CircID chr19:14397887|14398117
ORF Type ORF2
Protein Length 48
Nucleotide Length 147
Protein Sequence MTFSTWTPPPGVHSQVSGPHRDEAAGTPSTQHCIRLLVLNFPPAVQAL
Nucleotide Sequence ATGACTTTCTCCACCTGGACCCCGCCCCCTGGAGTCCACAGCCAGGTGAGTGGCCCCCACAGGGACGAGGCGGCGGGAACTCCATCCACACAGCACTGCATCCGTCTCCTTGTTCTAAACTTCCCACCCGCCGTCCAGGCTCTCTGA
CircID chr19:14397887|14398117
ORF Type ORF3
Protein Length 75
Nucleotide Length 225
Protein Sequence MESLPRSWTLSKNRESVCRERRCGGQRAWTAGGKFRTRRRMQCCVDGVPAASSLWGPLTWLWTPGGGVQVEKVIS
Nucleotide Sequence TTGGAGTCTCTGCCCAGGTCCTGGACTTTGTCGAAGAATCGGGAAAGCGTCTGCAGAGAGAGGAGATGTGGGGGTCAGAGAGCCTGGACGGCGGGTGGGAAGTTTAGAACAAGGAGACGGATGCAGTGCTGTGTGGATGGAGTTCCCGCCGCCTCGTCCCTGTGGGGGCCACTCACCTGGCTGTGGACTCCAGGGGGCGGGGTCCAGGTGGAGAAAGTCATATCT
CircID chr19:14397887|14398117
ORF Type ORF4
Protein Length 76
Nucleotide Length 228
Protein Sequence LSWSLCPGPGLCRRIGKASAERGDVGVREPGRRVGSLEQGDGCSAVWMEFPPPRPCGGHSPGCGLQGAGSRWRKSY
Nucleotide Sequence TTGTCTTGGAGTCTCTGCCCAGGTCCTGGACTTTGTCGAAGAATCGGGAAAGCGTCTGCAGAGAGAGGAGATGTGGGGGTCAGAGAGCCTGGACGGCGGGTGGGAAGTTTAGAACAAGGAGACGGATGCAGTGCTGTGTGGATGGAGTTCCCGCCGCCTCGTCCCTGTGGGGGCCACTCACCTGGCTGTGGACTCCAGGGGGCGGGGTCCAGGTGGAGAAAGTCATAT
CircID chr19:14397887|14398117
ORF Type ORF5
Protein Length 28
Nucleotide Length 87
Protein Sequence MDFVEESGKRLQREEMWGSESLDGGWEV
Nucleotide Sequence CTGGACTTTGTCGAAGAATCGGGAAAGCGTCTGCAGAGAGAGGAGATGTGGGGGTCAGAGAGCCTGGACGGCGGGTGGGAAGTTTAG
CircID chr19:14397887|14398117
ORF Type ORF6
Protein Length 32
Nucleotide Length 96
Protein Sequence MCGWSSRRLVPVGATHLAVDSRGRGPGGESHI
Nucleotide Sequence CTGTGTGGATGGAGTTCCCGCCGCCTCGTCCCTGTGGGGGCCACTCACCTGGCTGTGGACTCCAGGGGGCGGGGTCCAGGTGGAGAAAGTCATATC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab