CircRNA Information

General Information
circRNA Basic Information
CircID chr19:14488214|14488386
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTCCGCCTCCTGCATTCAAGTGATTCTCCCACCTCAGCTTCCCGAGTAGCTGGGATCACAGGTGTGCACCACCACGCCCACCTGTGTATTGTATTTTTAGTAGAGATGGGGTTTTGCCATGTAGGCCAGGCTGGTCTCAAACTGCTGACCTCATGTGATCCGTCAACCTCAAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:14488214|14488386 hsa-miR-214-5p 0 0 1
chr19:14488214|14488386 hsa-miR-214-3p 0 0 1
chr19:14488214|14488386 hsa-miR-34b-5p 0 0 1
chr19:14488214|14488386 hsa-miR-34b-3p 0 0 1
chr19:14488214|14488386 hsa-miR-552-5p 0 0 1
chr19:14488214|14488386 hsa-miR-552-3p 0 0 1
chr19:14488214|14488386 hsa-miR-563 0 0 1
chr19:14488214|14488386 hsa-miR-585-5p 0 0 1
chr19:14488214|14488386 hsa-miR-585-3p 0 0 1
chr19:14488214|14488386 hsa-miR-541-5p 0 0 1
chr19:14488214|14488386 hsa-miR-541-3p 0 0 1
chr19:14488214|14488386 hsa-miR-922 0 0 1
chr19:14488214|14488386 hsa-miR-1228-5p 0 0 1
chr19:14488214|14488386 hsa-miR-1228-3p 0 0 1
chr19:14488214|14488386 hsa-miR-1286 0 0 1
chr19:14488214|14488386 hsa-miR-769-5p 0 0 1
chr19:14488214|14488386 hsa-miR-654-5p 0 0 1
chr19:14488214|14488386 hsa-miR-876-3p 0 0 1
chr19:14488214|14488386 hsa-miR-338-5p 0 0 1
chr19:14488214|14488386 hsa-miR-548c-3p 0 0 1
chr19:14488214|14488386 hsa-miR-323-5p 0 0 1
chr19:14488214|14488386 hsa-miR-1268 0 0 1
chr19:14488214|14488386 hsa-miR-638 1 0 0
chr19:14488214|14488386 hsa-miR-1262 1 0 0
chr19:14488214|14488386 hsa-miR-1268a 1 1 0
chr19:14488214|14488386 hsa-miR-1275 1 0 0
chr19:14488214|14488386 hsa-miR-1268b 1 1 0
chr19:14488214|14488386 hsa-miR-4651 1 0 0
chr19:14488214|14488386 hsa-miR-4654 1 0 0
chr19:14488214|14488386 hsa-miR-4672 0 1 0
chr19:14488214|14488386 hsa-miR-4739 1 0 0
chr19:14488214|14488386 hsa-miR-5192 1 0 0
chr19:14488214|14488386 hsa-miR-6134 0 1 0
chr19:14488214|14488386 hsa-miR-8085 1 0 0
chr19:14488214|14488386 hsa-miR-4731-5p 1 0 0
chr19:14488214|14488386 hsa-miR-6765-5p 1 0 0
chr19:14488214|14488386 hsa-miR-6894-5p 1 0 0
chr19:14488214|14488386 hsa-miR-6854-5p 0 1 0
chr19:14488214|14488386 hsa-miR-7851-3p 1 0 0
chr19:14488214|14488386 hsa-miR-4786-5p 0 1 0
chr19:14488214|14488386 hsa-miR-7847-3p 1 0 0
chr19:14488214|14488386 hsa-miR-6746-5p 1 0 0
chr19:14488214|14488386 hsa-miR-7160-5p 0 1 0
chr19:14488214|14488386 hsa-miR-3189-5p 1 0 0
chr19:14488214|14488386 hsa-miR-6849-3p 0 1 0
chr19:14488214|14488386 hsa-miR-6742-5p 1 0 0
chr19:14488214|14488386 hsa-miR-6760-5p 1 0 0
chr19:14488214|14488386 hsa-miR-6782-5p 1 0 0
chr19:14488214|14488386 hsa-miR-1226-5p 1 0 0
chr19:14488214|14488386 hsa-miR-4786-3p 1 0 0
chr19:14488214|14488386 hsa-miR-3614-5p 1 1 0
chr19:14488214|14488386 hsa-miR-6802-5p 1 0 0
chr19:14488214|14488386 hsa-miR-6878-5p 1 1 0
chr19:14488214|14488386 hsa-miR-7162-3p 0 1 0
chr19:14488214|14488386 hsa-miR-3619-3p 1 0 0
chr19:14488214|14488386 hsa-miR-188-5p 1 0 0
chr19:14488214|14488386 hsa-miR-1233-5p 1 0 0
chr19:14488214|14488386 hsa-miR-1273h-5p 1 0 0
chr19:14488214|14488386 hsa-miR-6769b-5p 1 0 0
chr19:14488214|14488386 hsa-miR-6778-5p 1 1 0
chr19:14488214|14488386 hsa-miR-6870-5p 1 0 0
chr19:14488214|14488386 hsa-miR-6726-5p 1 0 0
chr19:14488214|14488386 hsa-miR-6756-5p 1 1 0
chr19:14488214|14488386 hsa-miR-6769a-5p 1 1 0
chr19:14488214|14488386 hsa-miR-6779-5p 1 0 0
chr19:14488214|14488386 hsa-miR-6780a-5p 1 0 0
chr19:14488214|14488386 hsa-miR-6777-5p 1 0 0
chr19:14488214|14488386 hsa-miR-6858-5p 1 0 0
chr19:14488214|14488386 hsa-miR-6889-5p 1 0 0
chr19:14488214|14488386 hsa-miR-939-5p 1 1 0
chr19:14488214|14488386 hsa-miR-6731-5p 1 0 0
chr19:14488214|14488386 hsa-miR-4665-5p 1 0 0
chr19:14488214|14488386 hsa-miR-4716-3p 1 0 0
chr19:14488214|14488386 hsa-miR-6766-5p 1 0 0
chr19:14488214|14488386 hsa-miR-363-5p 1 0 0
chr19:14488214|14488386 hsa-miR-6771-3p 0 1 0
chr19:14488214|14488386 hsa-miR-5197-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:14488214|14488386
ORF Type ORF1
Protein Length 54
Nucleotide Length 162
Protein Sequence MHSSDSPTSASRVAGITGVHHHAHLCIVFLVEMGFCHVGQAGLKLLTSCDPSTS
Nucleotide Sequence CTGCATTCAAGTGATTCTCCCACCTCAGCTTCCCGAGTAGCTGGGATCACAGGTGTGCACCACCACGCCCACCTGTGTATTGTATTTTTAGTAGAGATGGGGTTTTGCCATGTAGGCCAGGCTGGTCTCAAACTGCTGACCTCATGTGATCCGTCAACCTCA
CircID chr19:14488214|14488386
ORF Type ORF2
Protein Length 46
Nucleotide Length 138
Protein Sequence MRPAWPTWQNPISTKNTIHRWAWWCTPVIPATREAEVGESLECRRR
Nucleotide Sequence TTGAGACCAGCCTGGCCTACATGGCAAAACCCCATCTCTACTAAAAATACAATACACAGGTGGGCGTGGTGGTGCACACCTGTGATCCCAGCTACTCGGGAAGCTGAGGTGGGAGAATCACTTGAATGCAGGAGGCGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab