CircRNA Information

General Information
circRNA Basic Information
CircID chr19:1578042|1578372
Strand -
CircType exon
Host Gene ENSG00000071655.16;
Algorism CIRI2;
Sequence GGCCTTCCTCCTGGGTGTCTCCAAGGCTGGGCTTCGCCGCCGAGCCTGGTTCACGTGGGGCCGAGGACCGCGTCTGCAGGCGGCTCCAGCAGGCAGCACGGGCTCTCGGCAGGGCCTCTGGAAAGGACAGGGAGGGCTGGCTTTAGCGACTCCACGGGACGGGGACGCTTGGGCTCTTCTAGGGAGATGGGAAGCTCTTGGGAGGCACCCGTCATCCCAAGCACATCTGTGTTCACCAGGCAGTCCCCACTGCCAGGACCCGACTCCAGGGAGCCCCCGTGGCCCCGCAGCACCTGCCCTAGACGTGCTCCATCTCCGGGTCCGGGTCGGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:1578042|1578372 hsa-miR-34a-5p 0 0 1
chr19:1578042|1578372 hsa-miR-34a-3p 0 0 1
chr19:1578042|1578372 hsa-miR-150-5p 0 0 1
chr19:1578042|1578372 hsa-miR-150-3p 0 0 1
chr19:1578042|1578372 hsa-miR-370-5p 0 0 1
chr19:1578042|1578372 hsa-miR-370-3p 0 0 1
chr19:1578042|1578372 hsa-miR-335-5p 0 0 1
chr19:1578042|1578372 hsa-miR-335-3p 0 0 1
chr19:1578042|1578372 hsa-miR-449a 0 0 1
chr19:1578042|1578372 hsa-miR-484 0 0 1
chr19:1578042|1578372 hsa-miR-432-5p 0 0 1
chr19:1578042|1578372 hsa-miR-432-3p 0 0 1
chr19:1578042|1578372 hsa-miR-620 0 0 1
chr19:1578042|1578372 hsa-miR-636 0 0 1
chr19:1578042|1578372 hsa-miR-661 0 0 1
chr19:1578042|1578372 hsa-miR-662 0 0 1
chr19:1578042|1578372 hsa-miR-449b-5p 0 0 1
chr19:1578042|1578372 hsa-miR-449b-3p 0 0 1
chr19:1578042|1578372 hsa-miR-744-5p 0 0 1
chr19:1578042|1578372 hsa-miR-744-3p 0 0 1
chr19:1578042|1578372 hsa-miR-665 0 0 1
chr19:1578042|1578372 hsa-miR-1287-5p 0 0 1
chr19:1578042|1578372 hsa-miR-1287-3p 0 0 1
chr19:1578042|1578372 hsa-miR-1291 0 0 1
chr19:1578042|1578372 hsa-miR-1247-5p 0 0 1
chr19:1578042|1578372 hsa-miR-1247-3p 0 0 1
chr19:1578042|1578372 hsa-miR-1270 0 0 1
chr19:1578042|1578372 hsa-miR-1288-5p 0 0 1
chr19:1578042|1578372 hsa-miR-1288-3p 0 0 1
chr19:1578042|1578372 hsa-miR-1307-5p 0 0 1
chr19:1578042|1578372 hsa-miR-1307-3p 0 0 1
chr19:1578042|1578372 hsa-miR-491-5p 0 0 1
chr19:1578042|1578372 hsa-miR-339-5p 1 0 1
chr19:1578042|1578372 hsa-miR-1289 0 0 1
chr19:1578042|1578372 hsa-miR-525-5p 0 0 1
chr19:1578042|1578372 hsa-miR-576-3p 0 0 1
chr19:1578042|1578372 hsa-miR-520a-5p 0 0 1
chr19:1578042|1578372 hsa-miR-769-3p 0 0 1
chr19:1578042|1578372 hsa-miR-34c-5p 0 0 1
chr19:1578042|1578372 hsa-miR-450b-3p 0 0 1
chr19:1578042|1578372 hsa-miR-1274a 0 0 1
chr19:1578042|1578372 hsa-miR-1274b 0 0 1
chr19:1578042|1578372 hsa-miR-218 0 0 1
chr19:1578042|1578372 hsa-miR-1254 0 0 1
chr19:1578042|1578372 hsa-miR-638 1 0 0
chr19:1578042|1578372 hsa-miR-1470 1 0 0
chr19:1578042|1578372 hsa-miR-1538 1 0 0
chr19:1578042|1578372 hsa-miR-711 1 0 0
chr19:1578042|1578372 hsa-miR-2861 1 0 0
chr19:1578042|1578372 hsa-miR-3196 1 0 0
chr19:1578042|1578372 hsa-miR-4281 1 0 0
chr19:1578042|1578372 hsa-miR-3665 1 0 0
chr19:1578042|1578372 hsa-miR-4448 1 0 0
chr19:1578042|1578372 hsa-miR-4462 1 0 0
chr19:1578042|1578372 hsa-miR-3972 1 0 0
chr19:1578042|1578372 hsa-miR-4706 1 0 0
chr19:1578042|1578372 hsa-miR-5090 1 0 0
chr19:1578042|1578372 hsa-miR-5787 1 0 0
chr19:1578042|1578372 hsa-miR-6081 1 0 0
chr19:1578042|1578372 hsa-miR-6088 1 0 0
chr19:1578042|1578372 hsa-miR-8073 1 0 0
chr19:1578042|1578372 hsa-miR-12115 1 0 0
chr19:1578042|1578372 hsa-miR-6749-3p 1 0 0
chr19:1578042|1578372 hsa-miR-6894-5p 1 0 0
chr19:1578042|1578372 hsa-miR-6799-5p 1 0 0
chr19:1578042|1578372 hsa-miR-139-3p 1 0 0
chr19:1578042|1578372 hsa-miR-6880-5p 1 0 0
chr19:1578042|1578372 hsa-miR-4655-5p 1 0 0
chr19:1578042|1578372 hsa-miR-1915-5p 1 0 0
chr19:1578042|1578372 hsa-miR-6882-3p 1 0 0
chr19:1578042|1578372 hsa-miR-6858-3p 1 0 0
chr19:1578042|1578372 hsa-miR-6786-5p 1 0 0
chr19:1578042|1578372 hsa-miR-1226-5p 1 0 0
chr19:1578042|1578372 hsa-miR-4763-5p 1 0 0
chr19:1578042|1578372 hsa-miR-4707-3p 1 0 0
chr19:1578042|1578372 hsa-miR-4786-3p 1 0 0
chr19:1578042|1578372 hsa-miR-1229-5p 1 0 0
chr19:1578042|1578372 hsa-miR-4640-5p 1 0 0
chr19:1578042|1578372 hsa-miR-7113-3p 1 0 0
chr19:1578042|1578372 hsa-miR-6824-5p 1 0 0
chr19:1578042|1578372 hsa-miR-6781-5p 1 0 0
chr19:1578042|1578372 hsa-miR-7112-5p 1 0 0
chr19:1578042|1578372 hsa-miR-4687-5p 1 0 0
chr19:1578042|1578372 hsa-miR-3180-5p 1 0 0
chr19:1578042|1578372 hsa-miR-6886-3p 1 0 0
chr19:1578042|1578372 hsa-miR-3173-5p 1 0 0
chr19:1578042|1578372 hsa-miR-1207-5p 1 0 0
chr19:1578042|1578372 hsa-miR-4763-3p 1 0 0
chr19:1578042|1578372 hsa-miR-6893-5p 1 0 0
chr19:1578042|1578372 hsa-miR-6775-5p 1 0 0
chr19:1578042|1578372 hsa-miR-6743-5p 1 0 0
chr19:1578042|1578372 hsa-miR-6756-5p 1 0 0
chr19:1578042|1578372 hsa-miR-6819-5p 1 0 0
chr19:1578042|1578372 hsa-miR-6851-5p 1 0 0
chr19:1578042|1578372 hsa-miR-6774-5p 1 0 0
chr19:1578042|1578372 hsa-miR-6879-5p 1 0 0
chr19:1578042|1578372 hsa-miR-4685-3p 1 0 0
chr19:1578042|1578372 hsa-miR-4632-5p 1 0 0
chr19:1578042|1578372 hsa-miR-4726-5p 1 0 0
chr19:1578042|1578372 hsa-miR-4745-3p 1 0 0
chr19:1578042|1578372 hsa-miR-6848-5p 1 0 0
chr19:1578042|1578372 hsa-miR-7843-5p 1 0 0
chr19:1578042|1578372 hsa-miR-10398-3p 1 0 0
chr19:1578042|1578372 hsa-miR-6762-5p 1 0 0
chr19:1578042|1578372 hsa-miR-9851-5p 1 0 0
chr19:1578042|1578372 hsa-miR-6756-3p 1 0 0
chr19:1578042|1578372 hsa-miR-6769b-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:1578042|1578372
ORF Type ORF1
Protein Length 95
Nucleotide Length 285
Protein Sequence MVHVGPRTASAGGSSRQHGLSAGPLERTGRAGFSDSTGRGRLGSSREMGSSWEAPVIPSTSVFTRQSPLPGPDSREPPWPRSTCPRRAPSPGPGR
Nucleotide Sequence CTGGTTCACGTGGGGCCGAGGACCGCGTCTGCAGGCGGCTCCAGCAGGCAGCACGGGCTCTCGGCAGGGCCTCTGGAAAGGACAGGGAGGGCTGGCTTTAGCGACTCCACGGGACGGGGACGCTTGGGCTCTTCTAGGGAGATGGGAAGCTCTTGGGAGGCACCCGTCATCCCAAGCACATCTGTGTTCACCAGGCAGTCCCCACTGCCAGGACCCGACTCCAGGGAGCCCCCGTGGCCCCGCAGCACCTGCCCTAGACGTGCTCCATCTCCGGGTCCGGGTCGG
CircID chr19:1578042|1578372
ORF Type ORF2
Protein Length 107
Nucleotide Length 321
Protein Sequence MGVSKAGLRRRAWFTWGRGPRLQAAPAGSTGSRQGLWKGQGGLALATPRDGDAWALLGRWEALGRHPSSQAHLCSPGSPHCQDPTPGSPRGPAAPALDVLHLRVRVG
Nucleotide Sequence CTGGGTGTCTCCAAGGCTGGGCTTCGCCGCCGAGCCTGGTTCACGTGGGGCCGAGGACCGCGTCTGCAGGCGGCTCCAGCAGGCAGCACGGGCTCTCGGCAGGGCCTCTGGAAAGGACAGGGAGGGCTGGCTTTAGCGACTCCACGGGACGGGGACGCTTGGGCTCTTCTAGGGAGATGGGAAGCTCTTGGGAGGCACCCGTCATCCCAAGCACATCTGTGTTCACCAGGCAGTCCCCACTGCCAGGACCCGACTCCAGGGAGCCCCCGTGGCCCCGCAGCACCTGCCCTAGACGTGCTCCATCTCCGGGTCCGGGTCGGG
CircID chr19:1578042|1578372
ORF Type ORF3
Protein Length 39
Nucleotide Length 120
Protein Sequence MGFAAEPGSRGAEDRVCRRLQQAARALGRASGKDREGWL
Nucleotide Sequence CTGGGCTTCGCCGCCGAGCCTGGTTCACGTGGGGCCGAGGACCGCGTCTGCAGGCGGCTCCAGCAGGCAGCACGGGCTCTCGGCAGGGCCTCTGGAAAGGACAGGGAGGGCTGGCTTTAG
CircID chr19:1578042|1578372
ORF Type ORF4
Protein Length 34
Nucleotide Length 105
Protein Sequence MGGTRHPKHICVHQAVPTARTRLQGAPVAPQHLP
Nucleotide Sequence TTGGGAGGCACCCGTCATCCCAAGCACATCTGTGTTCACCAGGCAGTCCCCACTGCCAGGACCCGACTCCAGGGAGCCCCCGTGGCCCCGCAGCACCTGCCCTAG
CircID chr19:1578042|1578372
ORF Type ORF5
Protein Length 43
Nucleotide Length 129
Protein Sequence MSFPEALPRARAACWSRLQTRSSAPREPGSAAKPSLGDTQEEG
Nucleotide Sequence CTGTCCTTTCCAGAGGCCCTGCCGAGAGCCCGTGCTGCCTGCTGGAGCCGCCTGCAGACGCGGTCCTCGGCCCCACGTGAACCAGGCTCGGCGGCGAAGCCCAGCCTTGGAGACACCCAGGAGGAAGGC
CircID chr19:1578042|1578372
ORF Type ORF6
Protein Length 81
Nucleotide Length 243
Protein Sequence MPGEHRCAWDDGCLPRASHLPRRAQASPSRGVAKASPPCPFQRPCREPVLPAGAACRRGPRPHVNQARRRSPALETPRRKA
Nucleotide Sequence CTGCCTGGTGAACACAGATGTGCTTGGGATGACGGGTGCCTCCCAAGAGCTTCCCATCTCCCTAGAAGAGCCCAAGCGTCCCCGTCCCGTGGAGTCGCTAAAGCCAGCCCTCCCTGTCCTTTCCAGAGGCCCTGCCGAGAGCCCGTGCTGCCTGCTGGAGCCGCCTGCAGACGCGGTCCTCGGCCCCACGTGAACCAGGCTCGGCGGCGAAGCCCAGCCTTGGAGACACCCAGGAGGAAGGCC
CircID chr19:1578042|1578372
ORF Type ORF7
Protein Length 79
Nucleotide Length 240
Protein Sequence MRGHGGSLESGPGSGDCLVNTDVLGMTGASQELPISLEEPKRPRPVESLKPALPVLSRGPAESPCCLLEPPADAVLGPT
Nucleotide Sequence CTGCGGGGCCACGGGGGCTCCCTGGAGTCGGGTCCTGGCAGTGGGGACTGCCTGGTGAACACAGATGTGCTTGGGATGACGGGTGCCTCCCAAGAGCTTCCCATCTCCCTAGAAGAGCCCAAGCGTCCCCGTCCCGTGGAGTCGCTAAAGCCAGCCCTCCCTGTCCTTTCCAGAGGCCCTGCCGAGAGCCCGTGCTGCCTGCTGGAGCCGCCTGCAGACGCGGTCCTCGGCCCCACGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab