CircRNA Information

General Information
circRNA Basic Information
CircID chr19:16067652|16067738
Strand +
CircType exon
Host Gene ENSG00000167460.13;
Algorism CIRI2;
Sequence CTGCTTGCACTTGTCCTCAGCGGCTTTCTTATCCGCCTCCGCCTGCTCCGCGCGGTCGATGGCATTCTCCTTGTCCAACTTCAGCAT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:16067652|16067738 hsa-miR-130a-5p 0 0 1
chr19:16067652|16067738 hsa-miR-130a-3p 0 0 1
chr19:16067652|16067738 hsa-miR-301a-5p 0 0 1
chr19:16067652|16067738 hsa-miR-301a-3p 0 0 1
chr19:16067652|16067738 hsa-miR-130b-5p 0 0 1
chr19:16067652|16067738 hsa-miR-130b-3p 0 0 1
chr19:16067652|16067738 hsa-miR-658 1 1 1
chr19:16067652|16067738 hsa-miR-454-5p 0 0 1
chr19:16067652|16067738 hsa-miR-454-3p 0 0 1
chr19:16067652|16067738 hsa-miR-301b-5p 0 0 1
chr19:16067652|16067738 hsa-miR-301b-3p 0 0 1
chr19:16067652|16067738 hsa-miR-1224-5p 0 0 1
chr19:16067652|16067738 hsa-miR-519b-3p 0 0 1
chr19:16067652|16067738 hsa-miR-519c-3p 0 0 1
chr19:16067652|16067738 hsa-miR-519a 0 0 1
chr19:16067652|16067738 hsa-miR-639 1 0 0
chr19:16067652|16067738 hsa-miR-663a 1 0 0
chr19:16067652|16067738 hsa-miR-1471 1 0 0
chr19:16067652|16067738 hsa-miR-3147 1 1 0
chr19:16067652|16067738 hsa-miR-3665 1 0 0
chr19:16067652|16067738 hsa-miR-3937 1 0 0
chr19:16067652|16067738 hsa-miR-4430 1 0 0
chr19:16067652|16067738 hsa-miR-4466 1 0 0
chr19:16067652|16067738 hsa-miR-4498 1 0 0
chr19:16067652|16067738 hsa-miR-3960 1 0 0
chr19:16067652|16067738 hsa-miR-4663 1 0 0
chr19:16067652|16067738 hsa-miR-4688 1 0 0
chr19:16067652|16067738 hsa-miR-4706 1 0 0
chr19:16067652|16067738 hsa-miR-4767 1 0 0
chr19:16067652|16067738 hsa-miR-6081 1 1 0
chr19:16067652|16067738 hsa-miR-6086 1 0 0
chr19:16067652|16067738 hsa-miR-6165 1 0 0
chr19:16067652|16067738 hsa-miR-12114 1 0 0
chr19:16067652|16067738 hsa-miR-12115 1 0 0
chr19:16067652|16067738 hsa-miR-181a-3p 0 1 0
chr19:16067652|16067738 hsa-miR-6765-5p 1 0 0
chr19:16067652|16067738 hsa-miR-671-5p 1 0 0
chr19:16067652|16067738 hsa-miR-181c-3p 1 0 0
chr19:16067652|16067738 hsa-miR-6833-5p 1 0 0
chr19:16067652|16067738 hsa-miR-6880-5p 1 0 0
chr19:16067652|16067738 hsa-miR-7847-3p 1 0 0
chr19:16067652|16067738 hsa-miR-7160-5p 1 0 0
chr19:16067652|16067738 hsa-miR-6727-5p 1 0 0
chr19:16067652|16067738 hsa-miR-3605-5p 1 0 0
chr19:16067652|16067738 hsa-miR-3180-3p 1 0 0
chr19:16067652|16067738 hsa-miR-6805-5p 1 0 0
chr19:16067652|16067738 hsa-miR-6850-5p 1 0 0
chr19:16067652|16067738 hsa-miR-4640-5p 1 0 0
chr19:16067652|16067738 hsa-miR-4690-5p 1 1 0
chr19:16067652|16067738 hsa-miR-4732-5p 1 0 0
chr19:16067652|16067738 hsa-miR-3648 1 0 0
chr19:16067652|16067738 hsa-miR-7846-3p 1 0 0
chr19:16067652|16067738 hsa-miR-4750-5p 1 0 0
chr19:16067652|16067738 hsa-miR-5004-5p 0 1 0
chr19:16067652|16067738 hsa-miR-10400-5p 1 0 0
chr19:16067652|16067738 hsa-miR-4763-3p 1 0 0
chr19:16067652|16067738 hsa-miR-6787-5p 1 0 0
chr19:16067652|16067738 hsa-miR-6775-5p 1 0 0
chr19:16067652|16067738 hsa-miR-6743-5p 1 0 0
chr19:16067652|16067738 hsa-miR-6851-5p 1 0 0
chr19:16067652|16067738 hsa-miR-6774-5p 1 0 0
chr19:16067652|16067738 hsa-miR-6879-5p 1 0 0
chr19:16067652|16067738 hsa-miR-7111-5p 1 0 0
chr19:16067652|16067738 hsa-miR-6780b-5p 1 0 0
chr19:16067652|16067738 hsa-miR-10396a-5p 1 0 0
chr19:16067652|16067738 hsa-miR-10396b-5p 1 0 0
chr19:16067652|16067738 hsa-miR-1237-5p 1 0 0
chr19:16067652|16067738 hsa-miR-328-5p 1 0 0
chr19:16067652|16067738 hsa-miR-6849-5p 1 0 0
chr19:16067652|16067738 hsa-miR-6791-5p 1 0 0
chr19:16067652|16067738 hsa-miR-3619-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:16067652|16067738
ORF Type ORF1
Protein Length 29
Nucleotide Length 87
Protein Sequence LLALVLSGFLIRLRLLRAVDGILLVQLQH
Nucleotide Sequence CTGCTTGCACTTGTCCTCAGCGGCTTTCTTATCCGCCTCCGCCTGCTCCGCGCGGTCGATGGCATTCTCCTTGTCCAACTTCAGCAT
CircID chr19:16067652|16067738
ORF Type ORF2
Protein Length 27
Nucleotide Length 81
Protein Sequence MHLSSAAFLSASACSARSMAFSLSNFS
Nucleotide Sequence TTGCACTTGTCCTCAGCGGCTTTCTTATCCGCCTCCGCCTGCTCCGCGCGGTCGATGGCATTCTCCTTGTCCAACTTCAGC
CircID chr19:16067652|16067738
ORF Type ORF3
Protein Length 29
Nucleotide Length 87
Protein Sequence MLKLDKENAIDRAEQAEADKKAAEDKCKQ
Nucleotide Sequence ATGCTGAAGTTGGACAAGGAGAATGCCATCGACCGCGCGGAGCAGGCGGAGGCGGATAAGAAAGCCGCTGAGGACAAGTGCAAGCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab