CircRNA Information

General Information
circRNA Basic Information
CircID chr19:16083628|16083893
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence TCTGGAACTCTGGAGGCCGTGGCGGGAGGATCGCTTGAGCCCAGGAGGTCGAGGCTGCAGTGAGCTGTGATCGCACCACTACATTCCAGCCTGGGTGATAGAGTAAGACCCTGTCTCAAAAAAAAAAAAAAAAAAAGAAATGAATCTTTGGGAGGTGTTTATACTGCAAAAGCATGGTGGCTGGCTCAAGTGAGAACTCCGGTGTGAATGAGGGGCAGACGCGATGATCACTGGTCGGGCCCACACCATTGCCACACAAGGAACTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:16083628|16083893 hsa-miR-150-5p 0 0 1
chr19:16083628|16083893 hsa-miR-150-3p 0 0 1
chr19:16083628|16083893 hsa-miR-206 0 1 1
chr19:16083628|16083893 hsa-miR-377-5p 0 0 1
chr19:16083628|16083893 hsa-miR-377-3p 0 0 1
chr19:16083628|16083893 hsa-miR-346 1 1 1
chr19:16083628|16083893 hsa-miR-507 0 0 1
chr19:16083628|16083893 hsa-miR-557 0 0 1
chr19:16083628|16083893 hsa-miR-579-5p 0 0 1
chr19:16083628|16083893 hsa-miR-579-3p 0 0 1
chr19:16083628|16083893 hsa-miR-581 0 0 1
chr19:16083628|16083893 hsa-miR-613 0 0 1
chr19:16083628|16083893 hsa-miR-675-5p 0 0 1
chr19:16083628|16083893 hsa-miR-675-3p 0 0 1
chr19:16083628|16083893 hsa-miR-1182 0 0 1
chr19:16083628|16083893 hsa-miR-1228-5p 0 0 1
chr19:16083628|16083893 hsa-miR-1228-3p 0 0 1
chr19:16083628|16083893 hsa-miR-1229-5p 0 0 1
chr19:16083628|16083893 hsa-miR-1229-3p 0 0 1
chr19:16083628|16083893 hsa-miR-140-5p 0 0 1
chr19:16083628|16083893 hsa-miR-129-5p 0 0 1
chr19:16083628|16083893 hsa-miR-296-5p 0 0 1
chr19:16083628|16083893 hsa-miR-193a-5p 0 0 1
chr19:16083628|16083893 hsa-miR-1184 0 1 1
chr19:16083628|16083893 hsa-miR-525-5p 0 0 1
chr19:16083628|16083893 hsa-miR-502-5p 0 0 1
chr19:16083628|16083893 hsa-miR-324-3p 0 0 1
chr19:16083628|16083893 hsa-miR-520a-5p 0 0 1
chr19:16083628|16083893 hsa-miR-509-3-5p 0 1 1
chr19:16083628|16083893 hsa-miR-509-5p 0 0 1
chr19:16083628|16083893 hsa-miR-142-3p 0 0 1
chr19:16083628|16083893 hsa-miR-450b-5p 0 0 1
chr19:16083628|16083893 hsa-miR-644 0 0 1
chr19:16083628|16083893 hsa-miR-664 0 0 1
chr19:16083628|16083893 hsa-miR-1 0 0 1
chr19:16083628|16083893 hsa-miR-220a 0 0 1
chr19:16083628|16083893 hsa-miR-147 0 0 1
chr19:16083628|16083893 hsa-miR-1245 0 0 1
chr19:16083628|16083893 hsa-miR-608 1 0 0
chr19:16083628|16083893 hsa-miR-612 1 0 0
chr19:16083628|16083893 hsa-miR-638 1 0 0
chr19:16083628|16083893 hsa-miR-1303 1 1 0
chr19:16083628|16083893 hsa-miR-1538 1 0 0
chr19:16083628|16083893 hsa-miR-1913 1 0 0
chr19:16083628|16083893 hsa-miR-4322 0 1 0
chr19:16083628|16083893 hsa-miR-4258 1 1 0
chr19:16083628|16083893 hsa-miR-4265 0 1 0
chr19:16083628|16083893 hsa-miR-4430 0 1 0
chr19:16083628|16083893 hsa-miR-4674 1 0 0
chr19:16083628|16083893 hsa-miR-8079 0 1 0
chr19:16083628|16083893 hsa-miR-6749-3p 1 1 0
chr19:16083628|16083893 hsa-miR-500b-3p 0 1 0
chr19:16083628|16083893 hsa-miR-4665-3p 1 0 0
chr19:16083628|16083893 hsa-miR-3157-5p 1 1 0
chr19:16083628|16083893 hsa-miR-1273h-3p 1 1 0
chr19:16083628|16083893 hsa-miR-205-5p 1 1 0
chr19:16083628|16083893 hsa-miR-1301-3p 1 0 0
chr19:16083628|16083893 hsa-miR-6849-3p 1 0 0
chr19:16083628|16083893 hsa-miR-3194-5p 1 1 0
chr19:16083628|16083893 hsa-miR-6810-5p 1 0 0
chr19:16083628|16083893 hsa-miR-6882-3p 1 0 0
chr19:16083628|16083893 hsa-miR-6858-3p 1 1 0
chr19:16083628|16083893 hsa-miR-4691-3p 0 1 0
chr19:16083628|16083893 hsa-miR-3677-3p 1 0 0
chr19:16083628|16083893 hsa-miR-1304-3p 1 1 0
chr19:16083628|16083893 hsa-miR-937-5p 1 0 0
chr19:16083628|16083893 hsa-miR-660-3p 0 1 0
chr19:16083628|16083893 hsa-miR-4746-3p 1 0 0
chr19:16083628|16083893 hsa-miR-4524a-3p 0 1 0
chr19:16083628|16083893 hsa-miR-20b-3p 1 0 0
chr19:16083628|16083893 hsa-miR-4524b-3p 0 1 0
chr19:16083628|16083893 hsa-miR-550b-3p 0 1 0
chr19:16083628|16083893 hsa-miR-1207-5p 1 0 0
chr19:16083628|16083893 hsa-miR-4763-3p 1 0 0
chr19:16083628|16083893 hsa-miR-186-3p 0 1 0
chr19:16083628|16083893 hsa-miR-5189-5p 1 0 0
chr19:16083628|16083893 hsa-miR-6773-5p 0 1 0
chr19:16083628|16083893 hsa-miR-7151-3p 1 0 0
chr19:16083628|16083893 hsa-miR-6724-5p 0 1 0
chr19:16083628|16083893 hsa-miR-6727-3p 1 0 0
chr19:16083628|16083893 hsa-miR-6783-3p 0 1 0
chr19:16083628|16083893 hsa-miR-550a-3p 0 1 0
chr19:16083628|16083893 hsa-miR-498-3p 0 1 0
chr19:16083628|16083893 hsa-miR-362-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:16083628|16083893
ORF Type ORF1
Protein Length 38
Nucleotide Length 117
Protein Sequence MGDRVRPCLKKKKKKRNESLGGVYTAKAWWLAQVRTPV
Nucleotide Sequence CTGGGTGATAGAGTAAGACCCTGTCTCAAAAAAAAAAAAAAAAAAAGAAATGAATCTTTGGGAGGTGTTTATACTGCAAAAGCATGGTGGCTGGCTCAAGTGAGAACTCCGGTGTGA
CircID chr19:16083628|16083893
ORF Type ORF2
Protein Length 39
Nucleotide Length 117
Protein Sequence MRQGLTLSPRLECSGAITAHCSLDLLGSSDPPATASRVP
Nucleotide Sequence TTGAGACAGGGTCTTACTCTATCACCCAGGCTGGAATGTAGTGGTGCGATCACAGCTCACTGCAGCCTCGACCTCCTGGGCTCAAGCGATCCTCCCGCCACGGCCTCCAGAGTTCCA
CircID chr19:16083628|16083893
ORF Type ORF3
Protein Length 47
Nucleotide Length 144
Protein Sequence MCGNGVGPTSDHRVCPSFTPEFSLEPATMLLQYKHLPKIHFFFFFFF
Nucleotide Sequence TTGTGTGGCAATGGTGTGGGCCCGACCAGTGATCATCGCGTCTGCCCCTCATTCACACCGGAGTTCTCACTTGAGCCAGCCACCATGCTTTTGCAGTATAAACACCTCCCAAAGATTCATTTCTTTTTTTTTTTTTTTTTTTGA
CircID chr19:16083628|16083893
ORF Type ORF4
Protein Length 56
Nucleotide Length 171
Protein Sequence MVWARPVIIASAPHSHRSSHLSQPPCFCSINTSQRFISFFFFFFETGSYSITQAGM
Nucleotide Sequence ATGGTGTGGGCCCGACCAGTGATCATCGCGTCTGCCCCTCATTCACACCGGAGTTCTCACTTGAGCCAGCCACCATGCTTTTGCAGTATAAACACCTCCCAAAGATTCATTTCTTTTTTTTTTTTTTTTTTTGAGACAGGGTCTTACTCTATCACCCAGGCTGGAATGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab