CircRNA Information

General Information
circRNA Basic Information
CircID chr19:1611574|1611907
Strand +
CircType exon
Host Gene ENSG00000071564.13;
Algorism CIRI2;
Sequence CTCACATCTTTCTCCTCCCTGGGACCGTCTCCCACAGAGCTCTCCCCCCTCCCTCCAGAGCGGAACCTGAATCCCAAAGCAGCCTGTTTGAAACGGCGAGAAGAGGAAAAGGTGTCAGGTGTGGTTGGAGACCCCCAGATGGTGCTTTCAGCTCCCCACCCAGGCCTGAGCGAAGCCCACAACCCCGCCGGGCACATGTGAAAGGTATGCCTCCGTGGGACGAGCCACCCGCTTTCAGCCCTGTGCTCTGGCCCCAGAACGGCCACTCGAGACCCCGGGCTTCATCCACATCCACACCTCACACACCTGTTGTCAGCATCGAGCCAACACCAAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:1611574|1611907 hsa-miR-23a-5p 0 0 1
chr19:1611574|1611907 hsa-miR-23a-3p 0 0 1
chr19:1611574|1611907 hsa-miR-29a-5p 0 0 1
chr19:1611574|1611907 hsa-miR-29a-3p 0 0 1
chr19:1611574|1611907 hsa-miR-23b-5p 0 0 1
chr19:1611574|1611907 hsa-miR-23b-3p 0 0 1
chr19:1611574|1611907 hsa-miR-29c-5p 0 0 1
chr19:1611574|1611907 hsa-miR-29c-3p 0 0 1
chr19:1611574|1611907 hsa-miR-552-5p 0 0 1
chr19:1611574|1611907 hsa-miR-552-3p 0 0 1
chr19:1611574|1611907 hsa-miR-572 1 0 1
chr19:1611574|1611907 hsa-miR-607 0 0 1
chr19:1611574|1611907 hsa-miR-637 1 0 1
chr19:1611574|1611907 hsa-miR-650 0 0 1
chr19:1611574|1611907 hsa-miR-661 1 0 1
chr19:1611574|1611907 hsa-miR-662 0 0 1
chr19:1611574|1611907 hsa-miR-765 0 0 1
chr19:1611574|1611907 hsa-miR-920 0 0 1
chr19:1611574|1611907 hsa-miR-939-5p 0 0 1
chr19:1611574|1611907 hsa-miR-939-3p 0 0 1
chr19:1611574|1611907 hsa-miR-942-5p 0 0 1
chr19:1611574|1611907 hsa-miR-942-3p 0 0 1
chr19:1611574|1611907 hsa-miR-1228-5p 0 0 1
chr19:1611574|1611907 hsa-miR-1228-3p 0 0 1
chr19:1611574|1611907 hsa-miR-1238-5p 0 0 1
chr19:1611574|1611907 hsa-miR-1238-3p 0 0 1
chr19:1611574|1611907 hsa-miR-1293 0 0 1
chr19:1611574|1611907 hsa-miR-1294 0 0 1
chr19:1611574|1611907 hsa-miR-1255a 0 0 1
chr19:1611574|1611907 hsa-miR-1321 0 0 1
chr19:1611574|1611907 hsa-miR-491-5p 0 0 1
chr19:1611574|1611907 hsa-miR-767-5p 0 0 1
chr19:1611574|1611907 hsa-miR-516a-5p 0 0 1
chr19:1611574|1611907 hsa-miR-576-3p 0 0 1
chr19:1611574|1611907 hsa-miR-455-5p 0 0 1
chr19:1611574|1611907 hsa-miR-628-5p 0 0 1
chr19:1611574|1611907 hsa-miR-769-3p 0 0 1
chr19:1611574|1611907 hsa-miR-450b-3p 0 0 1
chr19:1611574|1611907 hsa-miR-515-5p 0 0 1
chr19:1611574|1611907 hsa-miR-1255b 0 0 1
chr19:1611574|1611907 hsa-miR-220c 0 0 1
chr19:1611574|1611907 hsa-miR-516b 0 0 1
chr19:1611574|1611907 hsa-miR-886-3p 0 0 1
chr19:1611574|1611907 hsa-miR-663 0 0 1
chr19:1611574|1611907 hsa-miR-549 0 0 1
chr19:1611574|1611907 hsa-miR-29b 0 0 1
chr19:1611574|1611907 hsa-miR-564 1 0 0
chr19:1611574|1611907 hsa-miR-604 1 0 0
chr19:1611574|1611907 hsa-miR-760 1 0 0
chr19:1611574|1611907 hsa-miR-711 1 0 0
chr19:1611574|1611907 hsa-miR-2861 1 0 0
chr19:1611574|1611907 hsa-miR-3141 1 0 0
chr19:1611574|1611907 hsa-miR-4322 1 0 0
chr19:1611574|1611907 hsa-miR-4265 1 0 0
chr19:1611574|1611907 hsa-miR-4281 1 0 0
chr19:1611574|1611907 hsa-miR-3665 1 0 0
chr19:1611574|1611907 hsa-miR-3911 1 0 0
chr19:1611574|1611907 hsa-miR-3937 1 0 0
chr19:1611574|1611907 hsa-miR-3689c 1 0 0
chr19:1611574|1611907 hsa-miR-4518 1 0 0
chr19:1611574|1611907 hsa-miR-4526 1 0 0
chr19:1611574|1611907 hsa-miR-1587 1 0 0
chr19:1611574|1611907 hsa-miR-3960 1 0 0
chr19:1611574|1611907 hsa-miR-4656 1 0 0
chr19:1611574|1611907 hsa-miR-4706 1 0 0
chr19:1611574|1611907 hsa-miR-4721 1 0 0
chr19:1611574|1611907 hsa-miR-4739 1 0 0
chr19:1611574|1611907 hsa-miR-5572 1 0 0
chr19:1611574|1611907 hsa-miR-5698 1 0 0
chr19:1611574|1611907 hsa-miR-6127 1 0 0
chr19:1611574|1611907 hsa-miR-6132 1 0 0
chr19:1611574|1611907 hsa-miR-6133 1 0 0
chr19:1611574|1611907 hsa-miR-6165 1 0 0
chr19:1611574|1611907 hsa-miR-8075 1 0 0
chr19:1611574|1611907 hsa-miR-8089 1 0 0
chr19:1611574|1611907 hsa-miR-9718 1 0 0
chr19:1611574|1611907 hsa-miR-11399 1 0 0
chr19:1611574|1611907 hsa-miR-12119 1 0 0
chr19:1611574|1611907 hsa-miR-135a-3p 1 0 0
chr19:1611574|1611907 hsa-miR-128-1-5p 1 0 0
chr19:1611574|1611907 hsa-miR-7155-5p 1 0 0
chr19:1611574|1611907 hsa-miR-6747-5p 1 0 0
chr19:1611574|1611907 hsa-miR-4433a-3p 1 0 0
chr19:1611574|1611907 hsa-miR-6765-5p 1 0 0
chr19:1611574|1611907 hsa-miR-671-5p 1 0 0
chr19:1611574|1611907 hsa-miR-7106-5p 1 0 0
chr19:1611574|1611907 hsa-miR-6825-5p 1 0 0
chr19:1611574|1611907 hsa-miR-4687-3p 1 0 0
chr19:1611574|1611907 hsa-miR-219a-1-3p 1 0 0
chr19:1611574|1611907 hsa-miR-6799-5p 1 0 0
chr19:1611574|1611907 hsa-miR-6728-5p 1 0 0
chr19:1611574|1611907 hsa-miR-6833-5p 1 0 0
chr19:1611574|1611907 hsa-miR-3934-5p 1 0 0
chr19:1611574|1611907 hsa-miR-1227-5p 1 0 0
chr19:1611574|1611907 hsa-miR-6515-5p 1 0 0
chr19:1611574|1611907 hsa-miR-6089 1 0 0
chr19:1611574|1611907 hsa-miR-4695-5p 1 0 0
chr19:1611574|1611907 hsa-miR-6867-5p 1 0 0
chr19:1611574|1611907 hsa-miR-6759-5p 1 0 0
chr19:1611574|1611907 hsa-miR-4655-5p 1 0 0
chr19:1611574|1611907 hsa-miR-197-5p 1 0 0
chr19:1611574|1611907 hsa-miR-7108-5p 1 0 0
chr19:1611574|1611907 hsa-miR-6742-5p 1 0 0
chr19:1611574|1611907 hsa-miR-3180-3p 1 0 0
chr19:1611574|1611907 hsa-miR-6793-5p 1 0 0
chr19:1611574|1611907 hsa-miR-6796-5p 1 0 0
chr19:1611574|1611907 hsa-miR-6829-5p 1 0 0
chr19:1611574|1611907 hsa-miR-6782-5p 1 0 0
chr19:1611574|1611907 hsa-miR-5008-5p 1 0 0
chr19:1611574|1611907 hsa-miR-5006-5p 1 0 0
chr19:1611574|1611907 hsa-miR-3934-3p 1 0 0
chr19:1611574|1611907 hsa-miR-6835-5p 1 0 0
chr19:1611574|1611907 hsa-miR-7109-5p 1 0 0
chr19:1611574|1611907 hsa-miR-193b-5p 1 0 0
chr19:1611574|1611907 hsa-miR-4640-5p 1 0 0
chr19:1611574|1611907 hsa-miR-6753-5p 1 0 0
chr19:1611574|1611907 hsa-miR-3691-5p 1 0 0
chr19:1611574|1611907 hsa-miR-4764-5p 1 0 0
chr19:1611574|1611907 hsa-miR-296-3p 1 0 0
chr19:1611574|1611907 hsa-miR-6771-5p 1 0 0
chr19:1611574|1611907 hsa-miR-6823-5p 1 0 0
chr19:1611574|1611907 hsa-miR-6749-5p 1 0 0
chr19:1611574|1611907 hsa-miR-4743-5p 1 0 0
chr19:1611574|1611907 hsa-miR-4787-5p 1 0 0
chr19:1611574|1611907 hsa-miR-149-3p 1 0 0
chr19:1611574|1611907 hsa-miR-6802-5p 1 0 0
chr19:1611574|1611907 hsa-miR-6886-5p 1 0 0
chr19:1611574|1611907 hsa-miR-4715-5p 1 0 0
chr19:1611574|1611907 hsa-miR-6781-5p 1 0 0
chr19:1611574|1611907 hsa-miR-574-5p 1 0 0
chr19:1611574|1611907 hsa-miR-6895-5p 1 0 0
chr19:1611574|1611907 hsa-miR-423-5p 1 0 0
chr19:1611574|1611907 hsa-miR-4707-5p 1 0 0
chr19:1611574|1611907 hsa-miR-1250-5p 1 0 0
chr19:1611574|1611907 hsa-miR-6826-5p 1 0 0
chr19:1611574|1611907 hsa-miR-7113-5p 1 0 0
chr19:1611574|1611907 hsa-miR-518c-5p 1 0 0
chr19:1611574|1611907 hsa-miR-1306-3p 1 0 0
chr19:1611574|1611907 hsa-miR-1233-5p 1 0 0
chr19:1611574|1611907 hsa-miR-3689b-3p 1 0 0
chr19:1611574|1611907 hsa-miR-4763-3p 1 0 0
chr19:1611574|1611907 hsa-miR-6769b-5p 1 0 0
chr19:1611574|1611907 hsa-miR-6778-5p 1 0 0
chr19:1611574|1611907 hsa-miR-6787-5p 1 0 0
chr19:1611574|1611907 hsa-miR-6812-5p 1 0 0
chr19:1611574|1611907 hsa-miR-6816-5p 1 0 0
chr19:1611574|1611907 hsa-miR-6870-5p 1 0 0
chr19:1611574|1611907 hsa-miR-1343-5p 1 0 0
chr19:1611574|1611907 hsa-miR-6726-5p 1 0 0
chr19:1611574|1611907 hsa-miR-6752-5p 1 0 0
chr19:1611574|1611907 hsa-miR-6754-5p 1 0 0
chr19:1611574|1611907 hsa-miR-6756-5p 1 0 0
chr19:1611574|1611907 hsa-miR-6803-5p 1 0 0
chr19:1611574|1611907 hsa-miR-6813-5p 1 0 0
chr19:1611574|1611907 hsa-miR-6851-5p 1 0 0
chr19:1611574|1611907 hsa-miR-7107-5p 1 0 0
chr19:1611574|1611907 hsa-miR-7110-5p 1 0 0
chr19:1611574|1611907 hsa-miR-10401-5p 1 0 0
chr19:1611574|1611907 hsa-miR-1249-5p 1 0 0
chr19:1611574|1611907 hsa-miR-6722-3p 1 0 0
chr19:1611574|1611907 hsa-miR-6751-5p 1 0 0
chr19:1611574|1611907 hsa-miR-6763-5p 1 0 0
chr19:1611574|1611907 hsa-miR-6779-5p 1 0 0
chr19:1611574|1611907 hsa-miR-6780a-5p 1 0 0
chr19:1611574|1611907 hsa-miR-6797-5p 1 0 0
chr19:1611574|1611907 hsa-miR-6875-5p 1 0 0
chr19:1611574|1611907 hsa-miR-7111-5p 1 0 0
chr19:1611574|1611907 hsa-miR-3620-5p 1 0 0
chr19:1611574|1611907 hsa-miR-4728-5p 1 0 0
chr19:1611574|1611907 hsa-miR-5196-5p 1 0 0
chr19:1611574|1611907 hsa-miR-6780b-5p 1 0 0
chr19:1611574|1611907 hsa-miR-6836-5p 1 0 0
chr19:1611574|1611907 hsa-miR-10396b-5p 1 0 0
chr19:1611574|1611907 hsa-miR-1237-5p 1 0 0
chr19:1611574|1611907 hsa-miR-328-5p 1 0 0
chr19:1611574|1611907 hsa-miR-3689a-3p 1 0 0
chr19:1611574|1611907 hsa-miR-4649-5p 1 0 0
chr19:1611574|1611907 hsa-miR-4685-5p 1 0 0
chr19:1611574|1611907 hsa-miR-4726-5p 1 0 0
chr19:1611574|1611907 hsa-miR-4745-3p 1 0 0
chr19:1611574|1611907 hsa-miR-4745-5p 1 0 0
chr19:1611574|1611907 hsa-miR-6729-5p 1 0 0
chr19:1611574|1611907 hsa-miR-6738-5p 1 0 0
chr19:1611574|1611907 hsa-miR-6795-5p 1 0 0
chr19:1611574|1611907 hsa-miR-6846-5p 1 0 0
chr19:1611574|1611907 hsa-miR-6848-5p 1 0 0
chr19:1611574|1611907 hsa-miR-6883-5p 1 0 0
chr19:1611574|1611907 hsa-miR-6887-5p 1 0 0
chr19:1611574|1611907 hsa-miR-6845-5p 1 0 0
chr19:1611574|1611907 hsa-miR-4758-5p 1 0 0
chr19:1611574|1611907 hsa-miR-1914-3p 1 0 0
chr19:1611574|1611907 hsa-miR-6736-5p 1 0 0
chr19:1611574|1611907 hsa-miR-6891-5p 1 0 0
chr19:1611574|1611907 hsa-miR-6785-5p 1 0 0
chr19:1611574|1611907 hsa-miR-6790-5p 1 0 0
chr19:1611574|1611907 hsa-miR-6724-5p 1 0 0
chr19:1611574|1611907 hsa-miR-3059-5p 1 0 0
chr19:1611574|1611907 hsa-miR-6764-5p 1 0 0
chr19:1611574|1611907 hsa-miR-549a-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr19:1611574|1611907
ORF Type ORF1
Protein Length 60
Nucleotide Length 183
Protein Sequence MGPSPTELSPLPPERNLNPKAACLKRREEEKVSGVVGDPQMVLSAPHPGLSEAHNPAGHM
Nucleotide Sequence CTGGGACCGTCTCCCACAGAGCTCTCCCCCCTCCCTCCAGAGCGGAACCTGAATCCCAAAGCAGCCTGTTTGAAACGGCGAGAAGAGGAAAAGGTGTCAGGTGTGGTTGGAGACCCCCAGATGGTGCTTTCAGCTCCCCACCCAGGCCTGAGCGAAGCCCACAACCCCGCCGGGCACATGTGA
CircID chr19:1611574|1611907
ORF Type ORF2
Protein Length 31
Nucleotide Length 93
Protein Sequence MCSGPRTATRDPGLHPHPHLTHLLSASSQHQ
Nucleotide Sequence CTGTGCTCTGGCCCCAGAACGGCCACTCGAGACCCCGGGCTTCATCCACATCCACACCTCACACACCTGTTGTCAGCATCGAGCCAACACCAA
CircID chr19:1611574|1611907
ORF Type ORF3
Protein Length 29
Nucleotide Length 87
Protein Sequence MAPERPLETPGFIHIHTSHTCCQHRANTN
Nucleotide Sequence CTGGCCCCAGAACGGCCACTCGAGACCCCGGGCTTCATCCACATCCACACCTCACACACCTGTTGTCAGCATCGAGCCAACACCAAC
CircID chr19:1611574|1611907
ORF Type ORF4
Protein Length 83
Nucleotide Length 249
Protein Sequence MFETARRGKGVRCGWRPPDGAFSSPPRPERSPQPRRAHVKGMPPWDEPPAFSPVLWPQNGHSRPRASSTSTPHTPVVSIEPTP
Nucleotide Sequence CTGTTTGAAACGGCGAGAAGAGGAAAAGGTGTCAGGTGTGGTTGGAGACCCCCAGATGGTGCTTTCAGCTCCCCACCCAGGCCTGAGCGAAGCCCACAACCCCGCCGGGCACATGTGAAAGGTATGCCTCCGTGGGACGAGCCACCCGCTTTCAGCCCTGTGCTCTGGCCCCAGAACGGCCACTCGAGACCCCGGGCTTCATCCACATCCACACCTCACACACCTGTTGTCAGCATCGAGCCAACACCA
CircID chr19:1611574|1611907
ORF Type ORF5
Protein Length 78
Nucleotide Length 237
Protein Sequence MKAGGSSHGGIPFTCARRGCGLRSGLGGELKAPSGGLQPHLTPFPLLAVSNRLLWDSGSALEGGGRALWETVPGRRKM
Nucleotide Sequence CTGAAAGCGGGTGGCTCGTCCCACGGAGGCATACCTTTCACATGTGCCCGGCGGGGTTGTGGGCTTCGCTCAGGCCTGGGTGGGGAGCTGAAAGCACCATCTGGGGGTCTCCAACCACACCTGACACCTTTTCCTCTTCTCGCCGTTTCAAACAGGCTGCTTTGGGATTCAGGTTCCGCTCTGGAGGGAGGGGGGAGAGCTCTGTGGGAGACGGTCCCAGGGAGGAGAAAGATGTGA
CircID chr19:1611574|1611907
ORF Type ORF6
Protein Length 85
Nucleotide Length 255
Protein Sequence MGPEHRAESGWLVPRRHTFHMCPAGLWASLRPGWGAESTIWGSPTTPDTFSSSRRFKQAALGFRFRSGGRGESSVGDGPREEKDV
Nucleotide Sequence CTGGGGCCAGAGCACAGGGCTGAAAGCGGGTGGCTCGTCCCACGGAGGCATACCTTTCACATGTGCCCGGCGGGGTTGTGGGCTTCGCTCAGGCCTGGGTGGGGAGCTGAAAGCACCATCTGGGGGTCTCCAACCACACCTGACACCTTTTCCTCTTCTCGCCGTTTCAAACAGGCTGCTTTGGGATTCAGGTTCCGCTCTGGAGGGAGGGGGGAGAGCTCTGTGGGAGACGGTCCCAGGGAGGAGAAAGATGTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab