CircRNA Information

General Information
circRNA Basic Information
CircID chr19:16401517|16401727
Strand -
CircType exon
Host Gene ENSG00000127527.12;
Algorism CIRI2;
Sequence ATCCAGACATGCGCGGCCCGGCCCATCCGCTCCCGGAACAGCACCAAGACGAAATGGGAAACTACATGTCCCCAGGTTCGAGGCTGCAGGGGCAGACTCTGGTGTGAACAGGGGGGATGTGACCACCTAAGGAAAAGGTCACACCTGTCTTGGTATCAGGGGCTCAAGAGCTCTCAAAAATGTAAGGGGCCGACAGTCCCCTGCCCCAGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:16401517|16401727 hsa-miR-377-5p 0 0 1
chr19:16401517|16401727 hsa-miR-377-3p 0 0 1
chr19:16401517|16401727 hsa-miR-346 1 1 1
chr19:16401517|16401727 hsa-miR-526b-5p 0 0 1
chr19:16401517|16401727 hsa-miR-526b-3p 0 0 1
chr19:16401517|16401727 hsa-miR-552-5p 0 0 1
chr19:16401517|16401727 hsa-miR-552-3p 0 0 1
chr19:16401517|16401727 hsa-miR-661 0 1 1
chr19:16401517|16401727 hsa-miR-1228-5p 0 0 1
chr19:16401517|16401727 hsa-miR-1228-3p 0 0 1
chr19:16401517|16401727 hsa-miR-1231 0 0 1
chr19:16401517|16401727 hsa-miR-1225-3p 0 1 1
chr19:16401517|16401727 hsa-miR-486-3p 0 0 1
chr19:16401517|16401727 hsa-miR-1184 0 0 1
chr19:16401517|16401727 hsa-miR-490-3p 0 1 1
chr19:16401517|16401727 hsa-miR-654-3p 0 0 1
chr19:16401517|16401727 hsa-miR-1207-5p 0 1 1
chr19:16401517|16401727 hsa-miR-324-3p 0 0 1
chr19:16401517|16401727 hsa-miR-1233 0 0 1
chr19:16401517|16401727 hsa-miR-323-5p 0 0 1
chr19:16401517|16401727 hsa-miR-1274b 0 0 1
chr19:16401517|16401727 hsa-miR-220a 0 0 1
chr19:16401517|16401727 hsa-miR-492 0 1 0
chr19:16401517|16401727 hsa-miR-637 1 0 0
chr19:16401517|16401727 hsa-miR-762 1 0 0
chr19:16401517|16401727 hsa-miR-663b 1 0 0
chr19:16401517|16401727 hsa-miR-1538 1 0 0
chr19:16401517|16401727 hsa-miR-2861 1 0 0
chr19:16401517|16401727 hsa-miR-3137 1 1 0
chr19:16401517|16401727 hsa-miR-3195 1 0 0
chr19:16401517|16401727 hsa-miR-4492 1 0 0
chr19:16401517|16401727 hsa-miR-4497 1 1 0
chr19:16401517|16401727 hsa-miR-4498 1 0 0
chr19:16401517|16401727 hsa-miR-4505 1 0 0
chr19:16401517|16401727 hsa-miR-1587 1 0 0
chr19:16401517|16401727 hsa-miR-4651 1 0 0
chr19:16401517|16401727 hsa-miR-4674 1 0 0
chr19:16401517|16401727 hsa-miR-5705 0 1 0
chr19:16401517|16401727 hsa-miR-5787 1 0 0
chr19:16401517|16401727 hsa-miR-6090 1 1 0
chr19:16401517|16401727 hsa-miR-7704 1 0 0
chr19:16401517|16401727 hsa-miR-8052 1 0 0
chr19:16401517|16401727 hsa-miR-8089 1 1 0
chr19:16401517|16401727 hsa-miR-12126 0 1 0
chr19:16401517|16401727 hsa-miR-4433b-3p 1 0 0
chr19:16401517|16401727 hsa-miR-323a-5p 0 1 0
chr19:16401517|16401727 hsa-miR-4665-3p 1 0 0
chr19:16401517|16401727 hsa-miR-210-5p 0 1 0
chr19:16401517|16401727 hsa-miR-7851-3p 0 1 0
chr19:16401517|16401727 hsa-miR-6741-5p 1 0 0
chr19:16401517|16401727 hsa-miR-6727-5p 1 0 0
chr19:16401517|16401727 hsa-miR-6721-5p 0 1 0
chr19:16401517|16401727 hsa-miR-4725-5p 1 0 0
chr19:16401517|16401727 hsa-miR-6852-5p 0 1 0
chr19:16401517|16401727 hsa-miR-4640-5p 1 0 0
chr19:16401517|16401727 hsa-miR-6771-5p 1 1 0
chr19:16401517|16401727 hsa-miR-1266-3p 0 1 0
chr19:16401517|16401727 hsa-miR-4446-3p 1 0 0
chr19:16401517|16401727 hsa-miR-7156-3p 1 1 0
chr19:16401517|16401727 hsa-miR-1250-5p 1 0 0
chr19:16401517|16401727 hsa-miR-6729-3p 0 1 0
chr19:16401517|16401727 hsa-miR-10a-5p 0 1 0
chr19:16401517|16401727 hsa-miR-4763-3p 0 1 0
chr19:16401517|16401727 hsa-miR-6816-5p 1 0 0
chr19:16401517|16401727 hsa-miR-1343-5p 1 0 0
chr19:16401517|16401727 hsa-miR-6743-5p 1 1 0
chr19:16401517|16401727 hsa-miR-6756-5p 1 0 0
chr19:16401517|16401727 hsa-miR-6722-3p 0 1 0
chr19:16401517|16401727 hsa-miR-6779-5p 1 0 0
chr19:16401517|16401727 hsa-miR-3620-5p 1 1 0
chr19:16401517|16401727 hsa-miR-4728-5p 1 0 0
chr19:16401517|16401727 hsa-miR-1237-5p 1 0 0
chr19:16401517|16401727 hsa-miR-1909-3p 0 1 0
chr19:16401517|16401727 hsa-miR-6848-5p 1 0 0
chr19:16401517|16401727 hsa-miR-939-5p 1 0 0
chr19:16401517|16401727 hsa-miR-6724-5p 1 0 0
chr19:16401517|16401727 hsa-miR-6810-3p 0 1 0
chr19:16401517|16401727 hsa-miR-6775-3p 1 0 0
chr19:16401517|16401727 hsa-miR-10392-3p 1 0 0
chr19:16401517|16401727 hsa-miR-370-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:16401517|16401727
ORF Type ORF1
Protein Length 32
Nucleotide Length 99
Protein Sequence MRGPAHPLPEQHQDEMGNYMSPGSRLQGQTLV
Nucleotide Sequence ATGCGCGGCCCGGCCCATCCGCTCCCGGAACAGCACCAAGACGAAATGGGAAACTACATGTCCCCAGGTTCGAGGCTGCAGGGGCAGACTCTGGTGTGA
CircID chr19:16401517|16401727
ORF Type ORF2
Protein Length 37
Nucleotide Length 111
Protein Sequence MFTPESAPAASNLGTCSFPFRLGAVPGADGPGRACLD
Nucleotide Sequence CTGTTCACACCAGAGTCTGCCCCTGCAGCCTCGAACCTGGGGACATGTAGTTTCCCATTTCGTCTTGGTGCTGTTCCGGGAGCGGATGGGCCGGGCCGCGCATGTCTGGAT
CircID chr19:16401517|16401727
ORF Type ORF3
Protein Length 31
Nucleotide Length 93
Protein Sequence MPLQPRTWGHVVSHFVLVLFRERMGRAAHVW
Nucleotide Sequence CTGCCCCTGCAGCCTCGAACCTGGGGACATGTAGTTTCCCATTTCGTCTTGGTGCTGTTCCGGGAGCGGATGGGCCGGGCCGCGCATGTCTGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab