CircRNA Information

General Information
circRNA Basic Information
CircID chr19:17360528|17360813
Strand -
CircType exon
Host Gene ENSG00000130300.7;
Algorism CIRI2;
Sequence CTGGATGGGGCTACAGGGATGCCTGCAGGGGGCCTCTGGGACTCCAGGATCTTCCTCTTGAACTCCTCCAGGCTAGCTGGGTCTGTGGAGGGAGAGAGGTGAGGCTTGACCTACAGCTTCAGTTGCCCCTGCCCCTGGGCTAGGGATGGGCTGGCAGCCCAGGGGAGTGGGAAAGTGGGGCTGGGGTGGGGTTCGAGGTGGAAAGGGGCCCCTCCCCTACTTGGCTCTGTCTTTTGTCACTCACCGATGGGCTGGGGGTTGGGGACAGGGCCCATGGGCCTTGACA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:17360528|17360813 hsa-miR-335-5p 0 0 1
chr19:17360528|17360813 hsa-miR-335-3p 0 0 1
chr19:17360528|17360813 hsa-miR-596 0 0 1
chr19:17360528|17360813 hsa-miR-765 0 1 1
chr19:17360528|17360813 hsa-miR-1202 0 0 1
chr19:17360528|17360813 hsa-miR-1205 0 1 1
chr19:17360528|17360813 hsa-miR-1291 0 1 1
chr19:17360528|17360813 hsa-miR-127-5p 0 0 1
chr19:17360528|17360813 hsa-miR-296-5p 0 0 1
chr19:17360528|17360813 hsa-miR-486-3p 0 0 1
chr19:17360528|17360813 hsa-miR-324-5p 0 0 1
chr19:17360528|17360813 hsa-miR-146b-3p 0 0 1
chr19:17360528|17360813 hsa-miR-339-5p 0 1 1
chr19:17360528|17360813 hsa-miR-1289 0 1 1
chr19:17360528|17360813 hsa-miR-423-5p 0 0 1
chr19:17360528|17360813 hsa-miR-361-3p 0 0 1
chr19:17360528|17360813 hsa-miR-331-3p 0 1 1
chr19:17360528|17360813 hsa-miR-188-3p 0 0 1
chr19:17360528|17360813 hsa-miR-1207-5p 0 0 1
chr19:17360528|17360813 hsa-miR-1260 0 0 1
chr19:17360528|17360813 hsa-miR-1274a 0 0 1
chr19:17360528|17360813 hsa-miR-1274b 0 0 1
chr19:17360528|17360813 hsa-miR-1254 0 0 1
chr19:17360528|17360813 hsa-miR-583 0 1 0
chr19:17360528|17360813 hsa-miR-661 1 0 0
chr19:17360528|17360813 hsa-miR-665 1 0 0
chr19:17360528|17360813 hsa-miR-3125 0 1 0
chr19:17360528|17360813 hsa-miR-4323 0 1 0
chr19:17360528|17360813 hsa-miR-4292 0 1 0
chr19:17360528|17360813 hsa-miR-3916 0 1 0
chr19:17360528|17360813 hsa-miR-4449 1 0 0
chr19:17360528|17360813 hsa-miR-4469 0 1 0
chr19:17360528|17360813 hsa-miR-3972 0 1 0
chr19:17360528|17360813 hsa-miR-4688 0 1 0
chr19:17360528|17360813 hsa-miR-5685 0 1 0
chr19:17360528|17360813 hsa-miR-7974 1 0 0
chr19:17360528|17360813 hsa-miR-766-3p 0 1 0
chr19:17360528|17360813 hsa-miR-1236-5p 0 1 0
chr19:17360528|17360813 hsa-miR-6721-5p 0 1 0
chr19:17360528|17360813 hsa-miR-3189-5p 0 1 0
chr19:17360528|17360813 hsa-miR-7110-3p 0 1 0
chr19:17360528|17360813 hsa-miR-5008-5p 0 1 0
chr19:17360528|17360813 hsa-miR-4436b-5p 0 1 0
chr19:17360528|17360813 hsa-miR-7109-3p 0 1 0
chr19:17360528|17360813 hsa-miR-1343-3p 0 1 0
chr19:17360528|17360813 hsa-miR-7161-3p 0 1 0
chr19:17360528|17360813 hsa-miR-7113-3p 0 1 0
chr19:17360528|17360813 hsa-miR-6824-5p 0 1 0
chr19:17360528|17360813 hsa-miR-4640-3p 1 0 0
chr19:17360528|17360813 hsa-miR-3922-5p 0 1 0
chr19:17360528|17360813 hsa-miR-7106-3p 1 1 0
chr19:17360528|17360813 hsa-miR-4758-3p 0 1 0
chr19:17360528|17360813 hsa-miR-6867-3p 0 1 0
chr19:17360528|17360813 hsa-miR-6793-3p 1 1 0
chr19:17360528|17360813 hsa-miR-1224-3p 0 1 0
chr19:17360528|17360813 hsa-miR-4746-5p 1 0 0
chr19:17360528|17360813 hsa-miR-6777-3p 0 1 0
chr19:17360528|17360813 hsa-miR-3124-3p 0 1 0
chr19:17360528|17360813 hsa-miR-6748-3p 0 1 0
chr19:17360528|17360813 hsa-miR-7152-5p 0 1 0
chr19:17360528|17360813 hsa-miR-3184-3p 0 1 0
chr19:17360528|17360813 hsa-miR-4433a-5p 0 1 0
chr19:17360528|17360813 hsa-miR-1229-3p 0 1 0
chr19:17360528|17360813 hsa-miR-6847-3p 0 1 0
chr19:17360528|17360813 hsa-miR-3156-3p 0 1 0
chr19:17360528|17360813 hsa-miR-4763-3p 0 1 0
chr19:17360528|17360813 hsa-miR-6775-5p 0 1 0
chr19:17360528|17360813 hsa-miR-6743-5p 0 1 0
chr19:17360528|17360813 hsa-miR-7107-5p 1 0 0
chr19:17360528|17360813 hsa-miR-4685-3p 0 1 0
chr19:17360528|17360813 hsa-miR-1909-3p 0 1 0
chr19:17360528|17360813 hsa-miR-6511b-5p 0 1 0
chr19:17360528|17360813 hsa-miR-3198 0 1 0
chr19:17360528|17360813 hsa-miR-6799-3p 1 0 0
chr19:17360528|17360813 hsa-miR-1914-3p 1 0 0
chr19:17360528|17360813 hsa-miR-3184-5p 1 1 0
chr19:17360528|17360813 hsa-miR-6791-5p 1 1 0
chr19:17360528|17360813 hsa-miR-4722-3p 0 1 0
chr19:17360528|17360813 hsa-miR-6792-3p 0 1 0
chr19:17360528|17360813 hsa-miR-6810-3p 1 1 0
chr19:17360528|17360813 hsa-miR-6775-3p 1 1 0
chr19:17360528|17360813 hsa-miR-4723-3p 0 1 0
chr19:17360528|17360813 hsa-miR-6769b-3p 0 1 0
chr19:17360528|17360813 hsa-miR-6823-3p 1 1 0
chr19:17360528|17360813 hsa-miR-6891-3p 0 1 0
chr19:17360528|17360813 hsa-miR-6859-5p 0 1 0
chr19:17360528|17360813 hsa-miR-10394-5p 0 1 0
chr19:17360528|17360813 hsa-miR-4690-3p 0 1 0
chr19:17360528|17360813 hsa-miR-6811-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:17360528|17360813
ORF Type ORF1
Protein Length 33
Nucleotide Length 102
Protein Sequence LDGATGMPAGGLWDSRIFLLNSSRLAGSVEGER
Nucleotide Sequence CTGGATGGGGCTACAGGGATGCCTGCAGGGGGCCTCTGGGACTCCAGGATCTTCCTCTTGAACTCCTCCAGGCTAGCTGGGTCTGTGGAGGGAGAGAGGTGA
CircID chr19:17360528|17360813
ORF Type ORF2
Protein Length 60
Nucleotide Length 180
Protein Sequence MTYSFSCPCPWARDGLAAQGSGKVGLGWGSRWKGAPPLLGSVFCHSPMGWGLGTGPMGLD
Nucleotide Sequence TTGACCTACAGCTTCAGTTGCCCCTGCCCCTGGGCTAGGGATGGGCTGGCAGCCCAGGGGAGTGGGAAAGTGGGGCTGGGGTGGGGTTCGAGGTGGAAAGGGGCCCCTCCCCTACTTGGCTCTGTCTTTTGTCACTCACCGATGGGCTGGGGGTTGGGGACAGGGCCCATGGGCCTTGAC
CircID chr19:17360528|17360813
ORF Type ORF3
Protein Length 47
Nucleotide Length 141
Protein Sequence MGWQPRGVGKWGWGGVRGGKGPLPYLALSFVTHRWAGGWGQGPWALT
Nucleotide Sequence ATGGGCTGGCAGCCCAGGGGAGTGGGAAAGTGGGGCTGGGGTGGGGTTCGAGGTGGAAAGGGGCCCCTCCCCTACTTGGCTCTGTCTTTTGTCACTCACCGATGGGCTGGGGGTTGGGGACAGGGCCCATGGGCCTTGACA
CircID chr19:17360528|17360813
ORF Type ORF4
Protein Length 35
Nucleotide Length 108
Protein Sequence MGLQDLPLELLQASWVCGGREVRLDLQLQLPLPLG
Nucleotide Sequence CTGGGACTCCAGGATCTTCCTCTTGAACTCCTCCAGGCTAGCTGGGTCTGTGGAGGGAGAGAGGTGAGGCTTGACCTACAGCTTCAGTTGCCCCTGCCCCTGGGCTAG
CircID chr19:17360528|17360813
ORF Type ORF5
Protein Length 42
Nucleotide Length 129
Protein Sequence MSPTPSPSVSDKRQSQVGEGPLSTSNPTPAPLSHSPGLPAHP
Nucleotide Sequence CTGTCCCCAACCCCCAGCCCATCGGTGAGTGACAAAAGACAGAGCCAAGTAGGGGAGGGGCCCCTTTCCACCTCGAACCCCACCCCAGCCCCACTTTCCCACTCCCCTGGGCTGCCAGCCCATCCCTAG
CircID chr19:17360528|17360813
ORF Type ORF6
Protein Length 29
Nucleotide Length 90
Protein Sequence MGCQPIPSPGAGATEAVGQASPLSLHRPS
Nucleotide Sequence CTGGGCTGCCAGCCCATCCCTAGCCCAGGGGCAGGGGCAACTGAAGCTGTAGGTCAAGCCTCACCTCTCTCCCTCCACAGACCCAGCTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab