CircRNA Information

General Information
circRNA Basic Information
CircID chr19:18013366|18013520
Strand +
CircType exon
Host Gene ENSG00000105643.8;
Algorism CIRI2;
Sequence CTGCCCTCTGAACCCCCAGTTCTACAATAAACGGGGTGGATTCCAAACGTCACTCAGCTCTGACCTTCTCTGACCTTTATTCCTCATTCGTCTGCCTGCTGAGCTCCTATTCGTACTCCAAAGCCTCAGCTAAAATGCCCTTTCCGCAAGGACGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:18013366|18013520 hsa-miR-214-5p 0 0 1
chr19:18013366|18013520 hsa-miR-214-3p 0 0 1
chr19:18013366|18013520 hsa-miR-493-5p 0 0 1
chr19:18013366|18013520 hsa-miR-493-3p 0 0 1
chr19:18013366|18013520 hsa-miR-637 0 1 1
chr19:18013366|18013520 hsa-miR-708-5p 0 0 1
chr19:18013366|18013520 hsa-miR-708-3p 0 0 1
chr19:18013366|18013520 hsa-miR-922 0 0 1
chr19:18013366|18013520 hsa-miR-548m 0 0 1
chr19:18013366|18013520 hsa-miR-485-5p 0 0 1
chr19:18013366|18013520 hsa-miR-28-5p 0 1 1
chr19:18013366|18013520 hsa-miR-502-5p 0 0 1
chr19:18013366|18013520 hsa-miR-768-5p 0 0 1
chr19:18013366|18013520 hsa-miR-2110 1 0 0
chr19:18013366|18013520 hsa-miR-3132 1 0 0
chr19:18013366|18013520 hsa-miR-3139 0 1 0
chr19:18013366|18013520 hsa-miR-3154 1 0 0
chr19:18013366|18013520 hsa-miR-3188 1 1 0
chr19:18013366|18013520 hsa-miR-4303 1 0 0
chr19:18013366|18013520 hsa-miR-4451 1 0 0
chr19:18013366|18013520 hsa-miR-3135b 1 0 0
chr19:18013366|18013520 hsa-miR-4463 1 0 0
chr19:18013366|18013520 hsa-miR-4478 1 0 0
chr19:18013366|18013520 hsa-miR-4487 1 0 0
chr19:18013366|18013520 hsa-miR-4514 1 1 0
chr19:18013366|18013520 hsa-miR-4516 1 0 0
chr19:18013366|18013520 hsa-miR-3974 1 1 0
chr19:18013366|18013520 hsa-miR-4656 1 0 0
chr19:18013366|18013520 hsa-miR-4657 1 0 0
chr19:18013366|18013520 hsa-miR-4663 1 0 0
chr19:18013366|18013520 hsa-miR-4688 1 0 0
chr19:18013366|18013520 hsa-miR-4689 1 0 0
chr19:18013366|18013520 hsa-miR-4734 1 0 0
chr19:18013366|18013520 hsa-miR-4739 1 0 0
chr19:18013366|18013520 hsa-miR-8077 0 1 0
chr19:18013366|18013520 hsa-miR-4433b-3p 1 0 0
chr19:18013366|18013520 hsa-miR-6765-5p 1 0 0
chr19:18013366|18013520 hsa-miR-6894-5p 1 0 0
chr19:18013366|18013520 hsa-miR-6857-5p 1 0 0
chr19:18013366|18013520 hsa-miR-219a-1-3p 1 0 0
chr19:18013366|18013520 hsa-miR-6510-5p 1 0 0
chr19:18013366|18013520 hsa-miR-5187-5p 1 0 0
chr19:18013366|18013520 hsa-miR-7160-5p 1 1 0
chr19:18013366|18013520 hsa-miR-6890-5p 1 0 0
chr19:18013366|18013520 hsa-miR-6806-5p 1 0 0
chr19:18013366|18013520 hsa-miR-197-5p 1 0 0
chr19:18013366|18013520 hsa-miR-7845-5p 1 0 0
chr19:18013366|18013520 hsa-miR-6798-5p 1 0 0
chr19:18013366|18013520 hsa-miR-6770-5p 1 1 0
chr19:18013366|18013520 hsa-miR-6881-5p 1 0 0
chr19:18013366|18013520 hsa-miR-2467-3p 1 0 0
chr19:18013366|18013520 hsa-miR-6852-5p 0 1 0
chr19:18013366|18013520 hsa-miR-1226-5p 1 0 0
chr19:18013366|18013520 hsa-miR-193b-5p 0 1 0
chr19:18013366|18013520 hsa-miR-6784-5p 1 0 0
chr19:18013366|18013520 hsa-miR-3127-5p 1 0 0
chr19:18013366|18013520 hsa-miR-4690-5p 1 1 0
chr19:18013366|18013520 hsa-miR-4732-5p 1 0 0
chr19:18013366|18013520 hsa-miR-3160-3p 0 1 0
chr19:18013366|18013520 hsa-miR-3616-3p 1 1 0
chr19:18013366|18013520 hsa-miR-6789-5p 1 0 0
chr19:18013366|18013520 hsa-miR-7162-3p 1 0 0
chr19:18013366|18013520 hsa-miR-6801-5p 1 1 0
chr19:18013366|18013520 hsa-miR-1207-5p 1 0 0
chr19:18013366|18013520 hsa-miR-4763-3p 1 0 0
chr19:18013366|18013520 hsa-miR-6893-5p 1 0 0
chr19:18013366|18013520 hsa-miR-6775-5p 1 0 0
chr19:18013366|18013520 hsa-miR-6743-5p 1 0 0
chr19:18013366|18013520 hsa-miR-6803-5p 0 1 0
chr19:18013366|18013520 hsa-miR-11181-3p 1 0 0
chr19:18013366|18013520 hsa-miR-6879-5p 1 1 0
chr19:18013366|18013520 hsa-miR-5196-5p 1 0 0
chr19:18013366|18013520 hsa-miR-6862-5p 1 0 0
chr19:18013366|18013520 hsa-miR-10526-3p 1 0 0
chr19:18013366|18013520 hsa-miR-1909-3p 1 0 0
chr19:18013366|18013520 hsa-miR-4632-5p 1 0 0
chr19:18013366|18013520 hsa-miR-4685-5p 1 0 0
chr19:18013366|18013520 hsa-miR-4726-5p 1 0 0
chr19:18013366|18013520 hsa-miR-6735-5p 1 0 0
chr19:18013366|18013520 hsa-miR-6858-5p 1 0 0
chr19:18013366|18013520 hsa-miR-6831-5p 1 1 0
chr19:18013366|18013520 hsa-miR-1910-3p 0 1 0
chr19:18013366|18013520 hsa-miR-4633-3p 1 0 0
chr19:18013366|18013520 hsa-miR-6511a-5p 1 1 0
chr19:18013366|18013520 hsa-miR-6511b-5p 1 0 0
chr19:18013366|18013520 hsa-miR-6758-5p 1 0 0
chr19:18013366|18013520 hsa-miR-6856-5p 1 0 0
chr19:18013366|18013520 hsa-miR-7843-5p 1 0 0
chr19:18013366|18013520 hsa-miR-6855-5p 0 1 0
chr19:18013366|18013520 hsa-miR-3173-3p 1 0 0
chr19:18013366|18013520 hsa-miR-4646-5p 1 0 0
chr19:18013366|18013520 hsa-miR-6529-5p 1 0 0
chr19:18013366|18013520 hsa-miR-320a-3p 1 0 0
chr19:18013366|18013520 hsa-miR-320b 1 0 0
chr19:18013366|18013520 hsa-miR-320c 1 0 0
chr19:18013366|18013520 hsa-miR-3619-5p 1 1 0
chr19:18013366|18013520 hsa-miR-4509 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr19:18013366|18013520
ORF Type ORF1
Protein Length 32
Nucleotide Length 96
Protein Sequence MTFSDLYSSFVCLLSSYSYSKASAKMPFPQGR
Nucleotide Sequence CTGACCTTCTCTGACCTTTATTCCTCATTCGTCTGCCTGCTGAGCTCCTATTCGTACTCCAAAGCCTCAGCTAAAATGCCCTTTCCGCAAGGACGC
CircID chr19:18013366|18013520
ORF Type ORF2
Protein Length 35
Nucleotide Length 108
Protein Sequence MRLWSTNRSSAGRRMRNKGQRRSELSDVWNPPRLL
Nucleotide Sequence CTGAGGCTTTGGAGTACGAATAGGAGCTCAGCAGGCAGACGAATGAGGAATAAAGGTCAGAGAAGGTCAGAGCTGAGTGACGTTTGGAATCCACCCCGTTTATTGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab