CircRNA Information

General Information
circRNA Basic Information
CircID chr19:18175331|18177946
Strand +
CircType exon
Host Gene ENSG00000268173.1;
Algorism CIRI2;
Sequence TCGCCTCTGGTACAACTGGCAGACAAGGGTAAGGAGCTGGGTCTGATCTTCCAAGGGTTTCCCATTGACGGTGACCCAGGGCACATACTCGTGTGGTGGCTGGAGAGCATCTGTCCGCTGGGCGTTGGCGTGCATGAGCTGCATGCCGCGGTCCCCCATTGCACACTCCATGATAGTGTCTGGCGACAGCCCTGGGGCGTAGAGCTGCAGGCATAGTGGCAGACTTCTCTCCATGTCCTCAAACTCTTCCATGCAGACAATGGTCAGGAAGGCTAGCTCCATGTCAAGTTCATCCAACACGCAGGCCTCCACCTTGTTGAATTTGCACTCCTCTTCTCCATGCTGGCACTTGAACTCCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:18175331|18177946 hsa-miR-19a-5p 0 0 1
chr19:18175331|18177946 hsa-miR-19a-3p 0 0 1
chr19:18175331|18177946 hsa-miR-26b-5p 0 0 1
chr19:18175331|18177946 hsa-miR-26b-3p 0 0 1
chr19:18175331|18177946 hsa-miR-122-5p 0 0 1
chr19:18175331|18177946 hsa-miR-122-3p 0 0 1
chr19:18175331|18177946 hsa-miR-130a-5p 0 0 1
chr19:18175331|18177946 hsa-miR-130a-3p 0 0 1
chr19:18175331|18177946 hsa-miR-185-5p 0 0 1
chr19:18175331|18177946 hsa-miR-185-3p 0 0 1
chr19:18175331|18177946 hsa-miR-301a-5p 0 0 1
chr19:18175331|18177946 hsa-miR-301a-3p 0 0 1
chr19:18175331|18177946 hsa-miR-130b-5p 0 0 1
chr19:18175331|18177946 hsa-miR-130b-3p 0 0 1
chr19:18175331|18177946 hsa-miR-383-5p 0 0 1
chr19:18175331|18177946 hsa-miR-383-3p 0 0 1
chr19:18175331|18177946 hsa-miR-346 1 1 1
chr19:18175331|18177946 hsa-miR-489-5p 0 0 1
chr19:18175331|18177946 hsa-miR-489-3p 0 0 1
chr19:18175331|18177946 hsa-miR-591 0 0 1
chr19:18175331|18177946 hsa-miR-624-5p 0 0 1
chr19:18175331|18177946 hsa-miR-624-3p 0 0 1
chr19:18175331|18177946 hsa-miR-625-5p 0 0 1
chr19:18175331|18177946 hsa-miR-625-3p 0 0 1
chr19:18175331|18177946 hsa-miR-632 0 0 1
chr19:18175331|18177946 hsa-miR-648 0 1 1
chr19:18175331|18177946 hsa-miR-650 0 0 1
chr19:18175331|18177946 hsa-miR-421 0 0 1
chr19:18175331|18177946 hsa-miR-1301-5p 0 0 1
chr19:18175331|18177946 hsa-miR-1301-3p 0 0 1
chr19:18175331|18177946 hsa-miR-454-5p 0 0 1
chr19:18175331|18177946 hsa-miR-454-3p 0 0 1
chr19:18175331|18177946 hsa-miR-766-5p 0 0 1
chr19:18175331|18177946 hsa-miR-766-3p 0 0 1
chr19:18175331|18177946 hsa-miR-874-5p 0 0 1
chr19:18175331|18177946 hsa-miR-874-3p 0 0 1
chr19:18175331|18177946 hsa-miR-301b-5p 0 0 1
chr19:18175331|18177946 hsa-miR-301b-3p 0 0 1
chr19:18175331|18177946 hsa-miR-1231 0 0 1
chr19:18175331|18177946 hsa-miR-1200 0 0 1
chr19:18175331|18177946 hsa-miR-1202 1 1 1
chr19:18175331|18177946 hsa-miR-1297 0 0 1
chr19:18175331|18177946 hsa-miR-1304-5p 0 0 1
chr19:18175331|18177946 hsa-miR-1304-3p 0 0 1
chr19:18175331|18177946 hsa-miR-1253 0 0 1
chr19:18175331|18177946 hsa-miR-1255a 0 0 1
chr19:18175331|18177946 hsa-miR-1275 0 0 1
chr19:18175331|18177946 hsa-miR-1224-5p 0 1 1
chr19:18175331|18177946 hsa-miR-146b-3p 0 0 1
chr19:18175331|18177946 hsa-miR-1184 0 0 1
chr19:18175331|18177946 hsa-miR-574-5p 0 1 1
chr19:18175331|18177946 hsa-miR-532-5p 0 0 1
chr19:18175331|18177946 hsa-miR-490-5p 0 0 1
chr19:18175331|18177946 hsa-miR-455-5p 0 1 1
chr19:18175331|18177946 hsa-miR-338-3p 0 0 1
chr19:18175331|18177946 hsa-miR-1255b 0 0 1
chr19:18175331|18177946 hsa-miR-7 0 0 1
chr19:18175331|18177946 hsa-miR-26a 0 0 1
chr19:18175331|18177946 hsa-miR-19b 0 0 1
chr19:18175331|18177946 hsa-miR-638 1 1 0
chr19:18175331|18177946 hsa-miR-762 1 0 0
chr19:18175331|18177946 hsa-miR-765 1 0 0
chr19:18175331|18177946 hsa-miR-1262 0 1 0
chr19:18175331|18177946 hsa-miR-3137 1 0 0
chr19:18175331|18177946 hsa-miR-3154 1 0 0
chr19:18175331|18177946 hsa-miR-4297 0 1 0
chr19:18175331|18177946 hsa-miR-4327 1 0 0
chr19:18175331|18177946 hsa-miR-4271 1 0 0
chr19:18175331|18177946 hsa-miR-4443 0 1 0
chr19:18175331|18177946 hsa-miR-4448 0 1 0
chr19:18175331|18177946 hsa-miR-4660 0 1 0
chr19:18175331|18177946 hsa-miR-4689 1 0 0
chr19:18175331|18177946 hsa-miR-4706 1 0 0
chr19:18175331|18177946 hsa-miR-4739 1 0 0
chr19:18175331|18177946 hsa-miR-4741 1 0 0
chr19:18175331|18177946 hsa-miR-5572 1 0 0
chr19:18175331|18177946 hsa-miR-6068 1 0 0
chr19:18175331|18177946 hsa-miR-8085 1 0 0
chr19:18175331|18177946 hsa-miR-12114 1 1 0
chr19:18175331|18177946 hsa-miR-504-3p 1 1 0
chr19:18175331|18177946 hsa-miR-6809-5p 1 0 0
chr19:18175331|18177946 hsa-miR-671-5p 0 1 0
chr19:18175331|18177946 hsa-miR-4687-3p 1 0 0
chr19:18175331|18177946 hsa-miR-6089 1 0 0
chr19:18175331|18177946 hsa-miR-7847-3p 1 0 0
chr19:18175331|18177946 hsa-miR-4653-3p 1 0 0
chr19:18175331|18177946 hsa-miR-4709-3p 1 0 0
chr19:18175331|18177946 hsa-miR-6730-5p 1 0 0
chr19:18175331|18177946 hsa-miR-6762-3p 1 0 0
chr19:18175331|18177946 hsa-miR-6787-3p 1 0 0
chr19:18175331|18177946 hsa-miR-1915-5p 1 0 0
chr19:18175331|18177946 hsa-miR-6871-5p 1 0 0
chr19:18175331|18177946 hsa-miR-6772-5p 1 0 0
chr19:18175331|18177946 hsa-miR-4697-3p 1 0 0
chr19:18175331|18177946 hsa-miR-6760-5p 1 0 0
chr19:18175331|18177946 hsa-miR-6514-5p 0 1 0
chr19:18175331|18177946 hsa-miR-6874-5p 0 1 0
chr19:18175331|18177946 hsa-miR-4633-5p 0 1 0
chr19:18175331|18177946 hsa-miR-3194-5p 1 0 0
chr19:18175331|18177946 hsa-miR-5006-5p 1 0 0
chr19:18175331|18177946 hsa-miR-6740-5p 1 1 0
chr19:18175331|18177946 hsa-miR-6894-3p 0 1 0
chr19:18175331|18177946 hsa-miR-4691-3p 0 1 0
chr19:18175331|18177946 hsa-miR-3667-3p 0 1 0
chr19:18175331|18177946 hsa-miR-6749-5p 1 0 0
chr19:18175331|18177946 hsa-miR-2681-3p 0 1 0
chr19:18175331|18177946 hsa-miR-6736-3p 0 1 0
chr19:18175331|18177946 hsa-miR-2276-3p 1 0 0
chr19:18175331|18177946 hsa-miR-3614-3p 0 1 0
chr19:18175331|18177946 hsa-miR-4761-5p 1 1 0
chr19:18175331|18177946 hsa-miR-6738-3p 1 0 0
chr19:18175331|18177946 hsa-miR-5004-5p 0 1 0
chr19:18175331|18177946 hsa-miR-6780b-3p 0 1 0
chr19:18175331|18177946 hsa-miR-4727-5p 0 1 0
chr19:18175331|18177946 hsa-miR-7159-5p 0 1 0
chr19:18175331|18177946 hsa-miR-4520-5p 0 1 0
chr19:18175331|18177946 hsa-miR-4802-3p 0 1 0
chr19:18175331|18177946 hsa-miR-5586-5p 0 1 0
chr19:18175331|18177946 hsa-miR-1207-5p 1 0 0
chr19:18175331|18177946 hsa-miR-1233-5p 0 1 0
chr19:18175331|18177946 hsa-miR-1273h-5p 1 0 0
chr19:18175331|18177946 hsa-miR-6778-5p 0 1 0
chr19:18175331|18177946 hsa-miR-6787-5p 1 0 0
chr19:18175331|18177946 hsa-miR-6812-5p 1 0 0
chr19:18175331|18177946 hsa-miR-6803-5p 1 0 0
chr19:18175331|18177946 hsa-miR-6851-5p 1 0 0
chr19:18175331|18177946 hsa-miR-7107-5p 1 0 0
chr19:18175331|18177946 hsa-miR-10401-5p 1 0 0
chr19:18175331|18177946 hsa-miR-11181-3p 1 0 0
chr19:18175331|18177946 hsa-miR-6780a-5p 1 0 0
chr19:18175331|18177946 hsa-miR-1915-3p 0 1 0
chr19:18175331|18177946 hsa-miR-5196-5p 1 0 0
chr19:18175331|18177946 hsa-miR-4685-5p 1 1 0
chr19:18175331|18177946 hsa-miR-4745-3p 1 0 0
chr19:18175331|18177946 hsa-miR-6777-5p 1 0 0
chr19:18175331|18177946 hsa-miR-6794-5p 1 0 0
chr19:18175331|18177946 hsa-miR-6858-5p 1 0 0
chr19:18175331|18177946 hsa-miR-1266-5p 0 1 0
chr19:18175331|18177946 hsa-miR-4633-3p 1 1 0
chr19:18175331|18177946 hsa-miR-10396b-3p 1 0 0
chr19:18175331|18177946 hsa-miR-6856-5p 1 0 0
chr19:18175331|18177946 hsa-miR-1271-3p 1 0 0
chr19:18175331|18177946 hsa-miR-4665-5p 1 1 0
chr19:18175331|18177946 hsa-miR-3679-5p 1 1 0
chr19:18175331|18177946 hsa-miR-6762-5p 1 0 0
chr19:18175331|18177946 hsa-miR-6512-3p 0 1 0
chr19:18175331|18177946 hsa-miR-362-5p 0 1 0
chr19:18175331|18177946 hsa-miR-6500-5p 0 1 0
chr19:18175331|18177946 hsa-miR-6764-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:18175331|18177946
ORF Type ORF1
Protein Length 69
Nucleotide Length 210
Protein Sequence MVQLADKGKELGLIFQGFPIDGDPGHILVWWLESICPLGVGVHELHAAVPHCTLHDSVWRQPWGVELQA
Nucleotide Sequence CTGGTACAACTGGCAGACAAGGGTAAGGAGCTGGGTCTGATCTTCCAAGGGTTTCCCATTGACGGTGACCCAGGGCACATACTCGTGTGGTGGCTGGAGAGCATCTGTCCGCTGGGCGTTGGCGTGCATGAGCTGCATGCCGCGGTCCCCCATTGCACACTCCATGATAGTGTCTGGCGACAGCCCTGGGGCGTAGAGCTGCAGGCATAG
CircID chr19:18175331|18177946
ORF Type ORF2
Protein Length 45
Nucleotide Length 138
Protein Sequence MTVTQGTYSCGGWRASVRWALACMSCMPRSPIAHSMIVSGDSPGA
Nucleotide Sequence TTGACGGTGACCCAGGGCACATACTCGTGTGGTGGCTGGAGAGCATCTGTCCGCTGGGCGTTGGCGTGCATGAGCTGCATGCCGCGGTCCCCCATTGCACACTCCATGATAGTGTCTGGCGACAGCCCTGGGGCGTAG
CircID chr19:18175331|18177946
ORF Type ORF3
Protein Length 43
Nucleotide Length 129
Protein Sequence MSSNSSMQTMVRKASSMSSSSNTQASTLLNLHSSSPCWHLNSH
Nucleotide Sequence ATGTCCTCAAACTCTTCCATGCAGACAATGGTCAGGAAGGCTAGCTCCATGTCAAGTTCATCCAACACGCAGGCCTCCACCTTGTTGAATTTGCACTCCTCTTCTCCATGCTGGCACTTGAACTCCCAC
CircID chr19:18175331|18177946
ORF Type ORF4
Protein Length 46
Nucleotide Length 141
Protein Sequence MATALGRRAAGIVADFSPCPQTLPCRQWSGRLAPCQVHPTRRPPPC
Nucleotide Sequence CTGGCGACAGCCCTGGGGCGTAGAGCTGCAGGCATAGTGGCAGACTTCTCTCCATGTCCTCAAACTCTTCCATGCAGACAATGGTCAGGAAGGCTAGCTCCATGTCAAGTTCATCCAACACGCAGGCCTCCACCTTGTTGA
CircID chr19:18175331|18177946
ORF Type ORF5
Protein Length 71
Nucleotide Length 213
Protein Sequence MPAALRPRAVARHYHGVCNGGPRHAAHARQRPADRCSPATTRVCALGHRQWETLGRSDPAPYPCLPVVPEA
Nucleotide Sequence ATGCCTGCAGCTCTACGCCCCAGGGCTGTCGCCAGACACTATCATGGAGTGTGCAATGGGGGACCGCGGCATGCAGCTCATGCACGCCAACGCCCAGCGGACAGATGCTCTCCAGCCACCACACGAGTATGTGCCCTGGGTCACCGTCAATGGGAAACCCTTGGAAGATCAGACCCAGCTCCTTACCCTTGTCTGCCAGTTGTACCAGAGGCG
CircID chr19:18175331|18177946
ORF Type ORF6
Protein Length 99
Nucleotide Length 297
Protein Sequence MDELDMELAFLTIVCMEEFEDMERSLPLCLQLYAPGLSPDTIMECAMGDRGMQLMHANAQRTDALQPPHEYVPWVTVNGKPLEDQTQLLTLVCQLYQRR
Nucleotide Sequence TTGGATGAACTTGACATGGAGCTAGCCTTCCTGACCATTGTCTGCATGGAAGAGTTTGAGGACATGGAGAGAAGTCTGCCACTATGCCTGCAGCTCTACGCCCCAGGGCTGTCGCCAGACACTATCATGGAGTGTGCAATGGGGGACCGCGGCATGCAGCTCATGCACGCCAACGCCCAGCGGACAGATGCTCTCCAGCCACCACACGAGTATGTGCCCTGGGTCACCGTCAATGGGAAACCCTTGGAAGATCAGACCCAGCTCCTTACCCTTGTCTGCCAGTTGTACCAGAGGCGA
CircID chr19:18175331|18177946
ORF Type ORF7
Protein Length 86
Nucleotide Length 258
Protein Sequence MSAWKSLRTWREVCHYACSSTPQGCRQTLSWSVQWGTAACSSCTPTPSGQMLSSHHTSMCPGSPSMGNPWKIRPSSLPLSASCTRG
Nucleotide Sequence TTGTCTGCATGGAAGAGTTTGAGGACATGGAGAGAAGTCTGCCACTATGCCTGCAGCTCTACGCCCCAGGGCTGTCGCCAGACACTATCATGGAGTGTGCAATGGGGGACCGCGGCATGCAGCTCATGCACGCCAACGCCCAGCGGACAGATGCTCTCCAGCCACCACACGAGTATGTGCCCTGGGTCACCGTCAATGGGAAACCCTTGGAAGATCAGACCCAGCTCCTTACCCTTGTCTGCCAGTTGTACCAGAGGC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab