CircRNA Information

General Information
circRNA Basic Information
CircID chr19:18275727|18275915
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence TTGAAACCTTTTTGGAAAAAGTCCTGACTGCACCAGTCCCTGGGCTGGCCAGTGTCTCCTTTCAGGAGCCTCTCCACCCAAATTCCCAATATCCTGCCTTCCTGGCCTCAGGGTCTTTGCACGGCTGCAGCTGTAGTTCTGTGCCAGCTACTCTTCCCCCAGTCATGCAGCTGAGCGCCACCTCCCAGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:18275727|18275915 hsa-miR-19a-5p 0 0 1
chr19:18275727|18275915 hsa-miR-19a-3p 0 0 1
chr19:18275727|18275915 hsa-miR-185-5p 0 0 1
chr19:18275727|18275915 hsa-miR-185-3p 0 0 1
chr19:18275727|18275915 hsa-miR-488-5p 0 0 1
chr19:18275727|18275915 hsa-miR-488-3p 0 0 1
chr19:18275727|18275915 hsa-miR-193b-5p 0 0 1
chr19:18275727|18275915 hsa-miR-193b-3p 0 0 1
chr19:18275727|18275915 hsa-miR-527 0 0 1
chr19:18275727|18275915 hsa-miR-504-5p 0 0 1
chr19:18275727|18275915 hsa-miR-504-3p 0 0 1
chr19:18275727|18275915 hsa-miR-625-5p 0 0 1
chr19:18275727|18275915 hsa-miR-625-3p 0 0 1
chr19:18275727|18275915 hsa-miR-637 1 0 1
chr19:18275727|18275915 hsa-miR-940 0 0 1
chr19:18275727|18275915 hsa-miR-1293 0 0 1
chr19:18275727|18275915 hsa-miR-1262 0 0 1
chr19:18275727|18275915 hsa-miR-1275 1 1 1
chr19:18275727|18275915 hsa-miR-1184 0 0 1
chr19:18275727|18275915 hsa-miR-1207-3p 0 0 1
chr19:18275727|18275915 hsa-miR-125a-5p 0 0 1
chr19:18275727|18275915 hsa-miR-518a-5p 0 0 1
chr19:18275727|18275915 hsa-miR-193a-3p 0 0 1
chr19:18275727|18275915 hsa-miR-125b 0 0 1
chr19:18275727|18275915 hsa-miR-19b 0 0 1
chr19:18275727|18275915 hsa-miR-608 1 0 0
chr19:18275727|18275915 hsa-miR-762 1 0 0
chr19:18275727|18275915 hsa-miR-665 1 0 0
chr19:18275727|18275915 hsa-miR-1182 1 0 0
chr19:18275727|18275915 hsa-miR-1231 1 0 0
chr19:18275727|18275915 hsa-miR-1973 0 1 0
chr19:18275727|18275915 hsa-miR-2861 1 0 0
chr19:18275727|18275915 hsa-miR-3132 1 0 0
chr19:18275727|18275915 hsa-miR-3147 1 0 0
chr19:18275727|18275915 hsa-miR-3175 1 0 0
chr19:18275727|18275915 hsa-miR-4270 1 0 0
chr19:18275727|18275915 hsa-miR-4271 1 1 0
chr19:18275727|18275915 hsa-miR-4450 1 0 0
chr19:18275727|18275915 hsa-miR-3689c 0 1 0
chr19:18275727|18275915 hsa-miR-4486 1 0 0
chr19:18275727|18275915 hsa-miR-4489 1 0 0
chr19:18275727|18275915 hsa-miR-4505 1 0 0
chr19:18275727|18275915 hsa-miR-4514 1 0 0
chr19:18275727|18275915 hsa-miR-4525 1 0 0
chr19:18275727|18275915 hsa-miR-4706 1 0 0
chr19:18275727|18275915 hsa-miR-4736 1 0 0
chr19:18275727|18275915 hsa-miR-4739 1 0 0
chr19:18275727|18275915 hsa-miR-4794 0 1 0
chr19:18275727|18275915 hsa-miR-5047 0 1 0
chr19:18275727|18275915 hsa-miR-5698 1 0 0
chr19:18275727|18275915 hsa-miR-5787 1 0 0
chr19:18275727|18275915 hsa-miR-6076 1 1 0
chr19:18275727|18275915 hsa-miR-6081 1 0 0
chr19:18275727|18275915 hsa-miR-6086 1 0 0
chr19:18275727|18275915 hsa-miR-6125 1 0 0
chr19:18275727|18275915 hsa-miR-6132 1 0 0
chr19:18275727|18275915 hsa-miR-6133 1 0 0
chr19:18275727|18275915 hsa-miR-6745 1 1 0
chr19:18275727|18275915 hsa-miR-8052 0 1 0
chr19:18275727|18275915 hsa-miR-8089 1 0 0
chr19:18275727|18275915 hsa-miR-12119 1 1 0
chr19:18275727|18275915 hsa-miR-12127 1 0 0
chr19:18275727|18275915 hsa-miR-6765-5p 1 0 0
chr19:18275727|18275915 hsa-miR-7106-5p 1 0 0
chr19:18275727|18275915 hsa-miR-6825-5p 1 0 0
chr19:18275727|18275915 hsa-miR-6857-5p 1 0 0
chr19:18275727|18275915 hsa-miR-1972 1 0 0
chr19:18275727|18275915 hsa-miR-4687-3p 1 0 0
chr19:18275727|18275915 hsa-miR-6799-5p 1 1 0
chr19:18275727|18275915 hsa-miR-1227-5p 1 0 0
chr19:18275727|18275915 hsa-miR-6089 1 1 0
chr19:18275727|18275915 hsa-miR-3192-5p 0 1 0
chr19:18275727|18275915 hsa-miR-6880-5p 1 0 0
chr19:18275727|18275915 hsa-miR-7847-3p 1 0 0
chr19:18275727|18275915 hsa-miR-4695-5p 1 0 0
chr19:18275727|18275915 hsa-miR-4722-5p 1 0 0
chr19:18275727|18275915 hsa-miR-505-5p 1 0 0
chr19:18275727|18275915 hsa-miR-4474-3p 1 0 0
chr19:18275727|18275915 hsa-miR-6721-5p 1 0 0
chr19:18275727|18275915 hsa-miR-197-5p 1 0 0
chr19:18275727|18275915 hsa-miR-6787-3p 0 1 0
chr19:18275727|18275915 hsa-miR-6742-5p 1 0 0
chr19:18275727|18275915 hsa-miR-6716-5p 1 0 0
chr19:18275727|18275915 hsa-miR-6871-5p 1 0 0
chr19:18275727|18275915 hsa-miR-6748-5p 1 0 0
chr19:18275727|18275915 hsa-miR-6772-5p 1 0 0
chr19:18275727|18275915 hsa-miR-6732-5p 1 0 0
chr19:18275727|18275915 hsa-miR-2467-5p 1 0 0
chr19:18275727|18275915 hsa-miR-6798-5p 1 0 0
chr19:18275727|18275915 hsa-miR-3667-5p 1 1 0
chr19:18275727|18275915 hsa-miR-30b-3p 1 1 0
chr19:18275727|18275915 hsa-miR-5008-5p 1 0 0
chr19:18275727|18275915 hsa-miR-3934-3p 1 0 0
chr19:18275727|18275915 hsa-miR-6786-5p 1 0 0
chr19:18275727|18275915 hsa-miR-6835-5p 1 0 0
chr19:18275727|18275915 hsa-miR-7109-5p 1 0 0
chr19:18275727|18275915 hsa-miR-1226-5p 1 0 0
chr19:18275727|18275915 hsa-miR-6740-5p 1 1 0
chr19:18275727|18275915 hsa-miR-4640-5p 1 1 0
chr19:18275727|18275915 hsa-miR-6757-3p 0 1 0
chr19:18275727|18275915 hsa-miR-1908-5p 1 0 0
chr19:18275727|18275915 hsa-miR-6771-5p 1 0 0
chr19:18275727|18275915 hsa-miR-92b-5p 1 0 0
chr19:18275727|18275915 hsa-miR-4743-5p 1 0 0
chr19:18275727|18275915 hsa-miR-4787-5p 1 0 0
chr19:18275727|18275915 hsa-miR-149-3p 1 0 0
chr19:18275727|18275915 hsa-miR-3162-5p 1 0 0
chr19:18275727|18275915 hsa-miR-5010-5p 1 0 0
chr19:18275727|18275915 hsa-miR-3190-5p 0 1 0
chr19:18275727|18275915 hsa-miR-7113-5p 0 1 0
chr19:18275727|18275915 hsa-miR-4766-5p 0 1 0
chr19:18275727|18275915 hsa-miR-1207-5p 1 0 0
chr19:18275727|18275915 hsa-miR-1233-5p 1 0 0
chr19:18275727|18275915 hsa-miR-1273h-5p 1 1 0
chr19:18275727|18275915 hsa-miR-3689b-3p 0 1 0
chr19:18275727|18275915 hsa-miR-4763-3p 1 0 0
chr19:18275727|18275915 hsa-miR-6787-5p 1 0 0
chr19:18275727|18275915 hsa-miR-6812-5p 1 0 0
chr19:18275727|18275915 hsa-miR-6870-5p 1 0 0
chr19:18275727|18275915 hsa-miR-6893-5p 1 1 0
chr19:18275727|18275915 hsa-miR-6737-5p 1 0 0
chr19:18275727|18275915 hsa-miR-6754-5p 1 0 0
chr19:18275727|18275915 hsa-miR-6756-5p 1 0 0
chr19:18275727|18275915 hsa-miR-6803-5p 1 0 0
chr19:18275727|18275915 hsa-miR-6813-5p 1 1 0
chr19:18275727|18275915 hsa-miR-6815-5p 1 1 0
chr19:18275727|18275915 hsa-miR-6819-5p 1 0 0
chr19:18275727|18275915 hsa-miR-6851-5p 0 1 0
chr19:18275727|18275915 hsa-miR-7110-5p 1 0 0
chr19:18275727|18275915 hsa-miR-6751-5p 1 0 0
chr19:18275727|18275915 hsa-miR-6763-5p 1 0 0
chr19:18275727|18275915 hsa-miR-6779-5p 1 0 0
chr19:18275727|18275915 hsa-miR-6780a-5p 1 1 0
chr19:18275727|18275915 hsa-miR-6788-5p 1 0 0
chr19:18275727|18275915 hsa-miR-6797-5p 1 0 0
chr19:18275727|18275915 hsa-miR-6808-5p 1 1 0
chr19:18275727|18275915 hsa-miR-6879-5p 1 0 0
chr19:18275727|18275915 hsa-miR-7111-5p 1 0 0
chr19:18275727|18275915 hsa-miR-3620-5p 1 0 0
chr19:18275727|18275915 hsa-miR-4728-5p 1 0 0
chr19:18275727|18275915 hsa-miR-5196-5p 1 0 0
chr19:18275727|18275915 hsa-miR-6780b-5p 1 1 0
chr19:18275727|18275915 hsa-miR-10396b-5p 1 0 0
chr19:18275727|18275915 hsa-miR-1237-5p 1 0 0
chr19:18275727|18275915 hsa-miR-3689a-3p 0 1 0
chr19:18275727|18275915 hsa-miR-4632-5p 1 0 0
chr19:18275727|18275915 hsa-miR-4649-5p 1 0 0
chr19:18275727|18275915 hsa-miR-4725-3p 1 0 0
chr19:18275727|18275915 hsa-miR-4726-5p 1 0 0
chr19:18275727|18275915 hsa-miR-4745-5p 1 0 0
chr19:18275727|18275915 hsa-miR-6729-5p 1 0 0
chr19:18275727|18275915 hsa-miR-6795-5p 1 0 0
chr19:18275727|18275915 hsa-miR-6846-5p 1 0 0
chr19:18275727|18275915 hsa-miR-6858-5p 1 0 0
chr19:18275727|18275915 hsa-miR-6887-5p 1 0 0
chr19:18275727|18275915 hsa-miR-4436b-3p 1 0 0
chr19:18275727|18275915 hsa-miR-4723-5p 1 0 0
chr19:18275727|18275915 hsa-miR-6845-5p 1 0 0
chr19:18275727|18275915 hsa-miR-939-5p 1 0 0
chr19:18275727|18275915 hsa-miR-6511a-5p 1 0 0
chr19:18275727|18275915 hsa-miR-6773-5p 1 0 0
chr19:18275727|18275915 hsa-miR-4665-5p 1 1 0
chr19:18275727|18275915 hsa-miR-6736-5p 1 0 0
chr19:18275727|18275915 hsa-miR-6855-5p 1 0 0
chr19:18275727|18275915 hsa-miR-3679-5p 1 0 0
chr19:18275727|18275915 hsa-miR-4747-5p 1 0 0
chr19:18275727|18275915 hsa-miR-6891-5p 1 0 0
chr19:18275727|18275915 hsa-miR-4716-3p 1 0 0
chr19:18275727|18275915 hsa-miR-3689d 0 1 0
chr19:18275727|18275915 hsa-miR-6791-5p 1 1 0
chr19:18275727|18275915 hsa-miR-6762-5p 1 0 0
chr19:18275727|18275915 hsa-miR-137-5p 1 0 0
chr19:18275727|18275915 hsa-miR-6764-5p 1 1 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr19:18275727|18275915
ORF Type ORF1
Protein Length 48
Nucleotide Length 147
Protein Sequence MHQSLGWPVSPFRSLSTQIPNILPSWPQGLCTAAAVVLCQLLFPQSCS
Nucleotide Sequence CTGCACCAGTCCCTGGGCTGGCCAGTGTCTCCTTTCAGGAGCCTCTCCACCCAAATTCCCAATATCCTGCCTTCCTGGCCTCAGGGTCTTTGCACGGCTGCAGCTGTAGTTCTGTGCCAGCTACTCTTCCCCCAGTCATGCAGCTGA
CircID chr19:18275727|18275915
ORF Type ORF2
Protein Length 59
Nucleotide Length 177
Protein Sequence MEKVLTAPVPGLASVSFQEPLHPNSQYPAFLASGSLHGCSCSSVPATLPPVMQLSATSQ
Nucleotide Sequence TTGGAAAAAGTCCTGACTGCACCAGTCCCTGGGCTGGCCAGTGTCTCCTTTCAGGAGCCTCTCCACCCAAATTCCCAATATCCTGCCTTCCTGGCCTCAGGGTCTTTGCACGGCTGCAGCTGTAGTTCTGTGCCAGCTACTCTTCCCCCAGTCATGCAGCTGAGCGCCACCTCCCAG
CircID chr19:18275727|18275915
ORF Type ORF3
Protein Length 49
Nucleotide Length 147
Protein Sequence MAQNYSCSRAKTLRPGRQDIGNLGGEAPERRHWPAQGLVQSGLFPKRFQ
Nucleotide Sequence CTGGCACAGAACTACAGCTGCAGCCGTGCAAAGACCCTGAGGCCAGGAAGGCAGGATATTGGGAATTTGGGTGGAGAGGCTCCTGAAAGGAGACACTGGCCAGCCCAGGGACTGGTGCAGTCAGGACTTTTTCCAAAAAGGTTTCAA
CircID chr19:18275727|18275915
ORF Type ORF4
Protein Length 26
Nucleotide Length 81
Protein Sequence LGGGAQLHDWGKSSWHRTTAAAVQRP
Nucleotide Sequence CTGGGAGGTGGCGCTCAGCTGCATGACTGGGGGAAGAGTAGCTGGCACAGAACTACAGCTGCAGCCGTGCAAAGACCCTGA
CircID chr19:18275727|18275915
ORF Type ORF5
Protein Length 29
Nucleotide Length 87
Protein Sequence MGIWVERLLKGDTGQPRDWCSQDFFQKGF
Nucleotide Sequence TTGGGAATTTGGGTGGAGAGGCTCCTGAAAGGAGACACTGGCCAGCCCAGGGACTGGTGCAGTCAGGACTTTTTCCAAAAAGGTTTC
CircID chr19:18275727|18275915
ORF Type ORF6
Protein Length 34
Nucleotide Length 105
Protein Sequence MTGGRVAGTELQLQPCKDPEARKAGYWEFGWRGS
Nucleotide Sequence ATGACTGGGGGAAGAGTAGCTGGCACAGAACTACAGCTGCAGCCGTGCAAAGACCCTGAGGCCAGGAAGGCAGGATATTGGGAATTTGGGTGGAGAGGCTCCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab