CircRNA Information

General Information
circRNA Basic Information
CircID chr19:18444121|18444222
Strand -
CircType exon
Host Gene ENSG00000105656.11;
Algorism CIRI2;
Sequence CTGGGCCACCCTGTTTGCTTGCTGGAGCAGAGACCCTGCCCAAGGAGGAGAGGCTGGGGAAAGGGGTGCCTAAACGTAGAGCCAGAGACCAGCAGAGGCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:18444121|18444222 hsa-miR-149-5p 0 0 1
chr19:18444121|18444222 hsa-miR-149-3p 0 0 1
chr19:18444121|18444222 hsa-miR-326 1 0 1
chr19:18444121|18444222 hsa-miR-593-5p 0 0 1
chr19:18444121|18444222 hsa-miR-593-3p 0 0 1
chr19:18444121|18444222 hsa-miR-635 0 0 1
chr19:18444121|18444222 hsa-miR-766-5p 0 0 1
chr19:18444121|18444222 hsa-miR-766-3p 0 0 1
chr19:18444121|18444222 hsa-miR-760 0 0 1
chr19:18444121|18444222 hsa-miR-1182 0 0 1
chr19:18444121|18444222 hsa-miR-663b 0 0 1
chr19:18444121|18444222 hsa-miR-767-3p 0 0 1
chr19:18444121|18444222 hsa-miR-338-3p 0 0 1
chr19:18444121|18444222 hsa-miR-1207-5p 0 0 1
chr19:18444121|18444222 hsa-miR-330-5p 1 0 1
chr19:18444121|18444222 hsa-miR-138 0 0 1
chr19:18444121|18444222 hsa-miR-612 1 1 0
chr19:18444121|18444222 hsa-miR-892b 1 0 0
chr19:18444121|18444222 hsa-miR-940 0 1 0
chr19:18444121|18444222 hsa-miR-1248 0 1 0
chr19:18444121|18444222 hsa-miR-3155a 1 0 0
chr19:18444121|18444222 hsa-miR-4686 1 0 0
chr19:18444121|18444222 hsa-miR-6860 1 0 0
chr19:18444121|18444222 hsa-miR-370-3p 1 0 0
chr19:18444121|18444222 hsa-miR-93-3p 1 0 0
chr19:18444121|18444222 hsa-miR-3194-3p 1 1 0
chr19:18444121|18444222 hsa-miR-6861-5p 1 0 0
chr19:18444121|18444222 hsa-miR-6822-3p 1 0 0
chr19:18444121|18444222 hsa-miR-3692-5p 1 1 0
chr19:18444121|18444222 hsa-miR-6842-3p 1 0 0
chr19:18444121|18444222 hsa-miR-6721-5p 0 1 0
chr19:18444121|18444222 hsa-miR-6849-3p 0 1 0
chr19:18444121|18444222 hsa-miR-6845-3p 0 1 0
chr19:18444121|18444222 hsa-miR-3663-5p 0 1 0
chr19:18444121|18444222 hsa-miR-6728-3p 1 1 0
chr19:18444121|18444222 hsa-miR-6735-3p 1 0 0
chr19:18444121|18444222 hsa-miR-6815-3p 1 0 0
chr19:18444121|18444222 hsa-miR-6763-3p 1 1 0
chr19:18444121|18444222 hsa-miR-3191-5p 0 1 0
chr19:18444121|18444222 hsa-miR-6878-3p 1 1 0
chr19:18444121|18444222 hsa-miR-4446-5p 1 1 0
chr19:18444121|18444222 hsa-miR-4707-5p 1 0 0
chr19:18444121|18444222 hsa-miR-1237-3p 1 0 0
chr19:18444121|18444222 hsa-miR-1236-3p 1 0 0
chr19:18444121|18444222 hsa-miR-6811-3p 1 0 0
chr19:18444121|18444222 hsa-miR-6895-3p 1 1 0
chr19:18444121|18444222 hsa-miR-6883-3p 1 0 0
chr19:18444121|18444222 hsa-miR-6789-3p 1 0 0
chr19:18444121|18444222 hsa-miR-6731-3p 1 0 0
chr19:18444121|18444222 hsa-miR-4763-3p 1 1 0
chr19:18444121|18444222 hsa-miR-6722-3p 1 0 0
chr19:18444121|18444222 hsa-miR-6774-5p 0 1 0
chr19:18444121|18444222 hsa-miR-6866-3p 0 1 0
chr19:18444121|18444222 hsa-miR-10396b-5p 1 0 0
chr19:18444121|18444222 hsa-miR-6791-3p 1 0 0
chr19:18444121|18444222 hsa-miR-6877-3p 1 1 0
chr19:18444121|18444222 hsa-miR-4757-5p 1 1 0
chr19:18444121|18444222 hsa-miR-6805-3p 1 0 0
chr19:18444121|18444222 hsa-miR-6810-3p 1 0 0
chr19:18444121|18444222 hsa-miR-6819-3p 1 0 0
chr19:18444121|18444222 hsa-miR-3085-3p 1 0 0
chr19:18444121|18444222 hsa-miR-6744-3p 1 1 0
chr19:18444121|18444222 hsa-miR-10394-5p 1 0 0
chr19:18444121|18444222 hsa-miR-6848-3p 1 1 0
chr19:18444121|18444222 hsa-miR-6781-3p 0 1 0
chr19:18444121|18444222 hsa-miR-6824-3p 1 0 0
chr19:18444121|18444222 hsa-miR-6843-3p 1 1 0
chr19:18444121|18444222 hsa-miR-10527-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


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    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr19:18444121|18444222
ORF Type ORF1
Protein Length 34
Nucleotide Length 102
Protein Sequence LGHPVCLLEQRPCPRRRGWGKGCLNVEPETSRGH
Nucleotide Sequence CTGGGCCACCCTGTTTGCTTGCTGGAGCAGAGACCCTGCCCAAGGAGGAGAGGCTGGGGAAAGGGGTGCCTAAACGTAGAGCCAGAGACCAGCAGAGGCCAC

CircID chr19:18444121|18444222
ORF Type ORF2
Protein Length 29
Nucleotide Length 87
Protein Sequence MLAGAETLPKEERLGKGVPKRRARDQQRP
Nucleotide Sequence TTGCTTGCTGGAGCAGAGACCCTGCCCAAGGAGGAGAGGCTGGGGAAAGGGGTGCCTAAACGTAGAGCCAGAGACCAGCAGAGGCCA

CircID chr19:18444121|18444222
ORF Type ORF3
Protein Length 31
Nucleotide Length 93
Protein Sequence MLVSGSTFRHPFPQPLLLGQGLCSSKQTGWP
Nucleotide Sequence CTGCTGGTCTCTGGCTCTACGTTTAGGCACCCCTTTCCCCAGCCTCTCCTCCTTGGGCAGGGTCTCTGCTCCAGCAAGCAAACAGGGTGGCCC

CircID chr19:18444121|18444222
ORF Type ORF4
Protein Length 28
Nucleotide Length 84
Protein Sequence MALRLGTPFPSLSSLGRVSAPASKQGGP
Nucleotide Sequence CTGGCTCTACGTTTAGGCACCCCTTTCCCCAGCCTCTCCTCCTTGGGCAGGGTCTCTGCTCCAGCAAGCAAACAGGGTGGCCCA

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites