CircRNA Information

General Information
circRNA Basic Information
CircID chr19:18483830|18483990
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CCTGCCTGCCCTGCCCACCCTGCCTGCACCTCCATGGGTCAATCTCCAGGCATGGCCCAGGCCTGCTTCCAGGACAGTGCATCTCAGAGCCATGCAACCCATGCCTGGCACAAGCCCTCCTGCCAACACCTTAACTTTGCCTTTCCCCCTTATTATTCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:18483830|18483990 hsa-miR-18a-5p 0 0 1
chr19:18483830|18483990 hsa-miR-18a-3p 0 0 1
chr19:18483830|18483990 hsa-miR-143-5p 0 0 1
chr19:18483830|18483990 hsa-miR-143-3p 0 0 1
chr19:18483830|18483990 hsa-miR-18b-5p 0 0 1
chr19:18483830|18483990 hsa-miR-18b-3p 0 0 1
chr19:18483830|18483990 hsa-miR-620 0 0 1
chr19:18483830|18483990 hsa-miR-625-5p 0 0 1
chr19:18483830|18483990 hsa-miR-625-3p 0 0 1
chr19:18483830|18483990 hsa-miR-661 1 1 1
chr19:18483830|18483990 hsa-miR-541-5p 0 0 1
chr19:18483830|18483990 hsa-miR-541-3p 0 0 1
chr19:18483830|18483990 hsa-miR-760 0 0 1
chr19:18483830|18483990 hsa-miR-940 0 0 1
chr19:18483830|18483990 hsa-miR-1227-5p 0 0 1
chr19:18483830|18483990 hsa-miR-1227-3p 0 0 1
chr19:18483830|18483990 hsa-miR-1270 0 0 1
chr19:18483830|18483990 hsa-miR-671-5p 0 0 1
chr19:18483830|18483990 hsa-miR-654-5p 0 0 1
chr19:18483830|18483990 hsa-miR-1207-5p 1 1 1
chr19:18483830|18483990 hsa-miR-1308 0 0 1
chr19:18483830|18483990 hsa-miR-1254 0 0 1
chr19:18483830|18483990 hsa-miR-564 1 0 0
chr19:18483830|18483990 hsa-miR-663a 1 0 0
chr19:18483830|18483990 hsa-miR-762 1 0 0
chr19:18483830|18483990 hsa-miR-765 1 0 0
chr19:18483830|18483990 hsa-miR-1182 1 0 0
chr19:18483830|18483990 hsa-miR-2110 1 0 0
chr19:18483830|18483990 hsa-miR-2861 1 0 0
chr19:18483830|18483990 hsa-miR-3153 1 1 0
chr19:18483830|18483990 hsa-miR-3154 1 0 0
chr19:18483830|18483990 hsa-miR-3175 1 0 0
chr19:18483830|18483990 hsa-miR-3197 1 0 0
chr19:18483830|18483990 hsa-miR-4271 1 0 0
chr19:18483830|18483990 hsa-miR-3659 1 0 0
chr19:18483830|18483990 hsa-miR-3665 1 0 0
chr19:18483830|18483990 hsa-miR-3921 0 1 0
chr19:18483830|18483990 hsa-miR-3936 1 0 0
chr19:18483830|18483990 hsa-miR-3945 1 0 0
chr19:18483830|18483990 hsa-miR-4466 1 0 0
chr19:18483830|18483990 hsa-miR-4507 1 0 0
chr19:18483830|18483990 hsa-miR-4514 0 1 0
chr19:18483830|18483990 hsa-miR-4516 1 0 0
chr19:18483830|18483990 hsa-miR-4525 1 0 0
chr19:18483830|18483990 hsa-miR-4692 1 1 0
chr19:18483830|18483990 hsa-miR-4706 1 0 0
chr19:18483830|18483990 hsa-miR-4710 1 0 0
chr19:18483830|18483990 hsa-miR-4721 0 1 0
chr19:18483830|18483990 hsa-miR-4734 1 0 0
chr19:18483830|18483990 hsa-miR-4739 1 0 0
chr19:18483830|18483990 hsa-miR-4741 1 0 0
chr19:18483830|18483990 hsa-miR-5572 1 0 0
chr19:18483830|18483990 hsa-miR-5698 1 0 0
chr19:18483830|18483990 hsa-miR-6124 1 0 0
chr19:18483830|18483990 hsa-miR-6125 1 0 0
chr19:18483830|18483990 hsa-miR-6132 1 0 0
chr19:18483830|18483990 hsa-miR-6745 1 0 0
chr19:18483830|18483990 hsa-miR-7150 0 1 0
chr19:18483830|18483990 hsa-miR-8085 1 0 0
chr19:18483830|18483990 hsa-miR-8089 1 0 0
chr19:18483830|18483990 hsa-miR-152-5p 0 1 0
chr19:18483830|18483990 hsa-miR-6734-5p 1 0 0
chr19:18483830|18483990 hsa-miR-504-3p 1 0 0
chr19:18483830|18483990 hsa-miR-6765-5p 1 0 0
chr19:18483830|18483990 hsa-miR-218-2-3p 0 1 0
chr19:18483830|18483990 hsa-miR-3150a-3p 1 0 0
chr19:18483830|18483990 hsa-miR-4687-3p 1 0 0
chr19:18483830|18483990 hsa-miR-6799-5p 1 0 0
chr19:18483830|18483990 hsa-miR-6804-5p 1 0 0
chr19:18483830|18483990 hsa-miR-6873-5p 1 0 0
chr19:18483830|18483990 hsa-miR-6880-5p 1 0 0
chr19:18483830|18483990 hsa-miR-4722-5p 1 1 0
chr19:18483830|18483990 hsa-miR-6730-5p 1 0 0
chr19:18483830|18483990 hsa-miR-7160-5p 1 0 0
chr19:18483830|18483990 hsa-miR-3622b-5p 0 1 0
chr19:18483830|18483990 hsa-miR-6806-5p 1 1 0
chr19:18483830|18483990 hsa-miR-6721-5p 1 1 0
chr19:18483830|18483990 hsa-miR-197-5p 1 0 0
chr19:18483830|18483990 hsa-miR-6716-5p 1 0 0
chr19:18483830|18483990 hsa-miR-6772-5p 1 0 0
chr19:18483830|18483990 hsa-miR-6732-5p 1 0 0
chr19:18483830|18483990 hsa-miR-3190-3p 1 0 0
chr19:18483830|18483990 hsa-miR-6805-5p 1 0 0
chr19:18483830|18483990 hsa-miR-6798-5p 1 1 0
chr19:18483830|18483990 hsa-miR-6760-5p 1 0 0
chr19:18483830|18483990 hsa-miR-6881-5p 1 0 0
chr19:18483830|18483990 hsa-miR-2467-3p 1 0 0
chr19:18483830|18483990 hsa-miR-6782-5p 1 0 0
chr19:18483830|18483990 hsa-miR-5006-5p 0 1 0
chr19:18483830|18483990 hsa-miR-7109-5p 1 0 0
chr19:18483830|18483990 hsa-miR-1226-5p 0 1 0
chr19:18483830|18483990 hsa-miR-6853-5p 1 0 0
chr19:18483830|18483990 hsa-miR-1908-5p 1 0 0
chr19:18483830|18483990 hsa-miR-6771-5p 1 0 0
chr19:18483830|18483990 hsa-miR-4690-5p 0 1 0
chr19:18483830|18483990 hsa-miR-6823-5p 1 0 0
chr19:18483830|18483990 hsa-miR-6749-5p 1 0 0
chr19:18483830|18483990 hsa-miR-7854-3p 1 0 0
chr19:18483830|18483990 hsa-miR-4787-5p 1 0 0
chr19:18483830|18483990 hsa-miR-6824-5p 1 0 0
chr19:18483830|18483990 hsa-miR-6789-5p 1 0 0
chr19:18483830|18483990 hsa-miR-3162-5p 1 0 0
chr19:18483830|18483990 hsa-miR-6802-5p 1 0 0
chr19:18483830|18483990 hsa-miR-6892-5p 1 0 0
chr19:18483830|18483990 hsa-miR-5010-5p 1 0 0
chr19:18483830|18483990 hsa-miR-7112-5p 1 1 0
chr19:18483830|18483990 hsa-miR-423-5p 1 0 0
chr19:18483830|18483990 hsa-miR-6508-3p 0 1 0
chr19:18483830|18483990 hsa-miR-3680-3p 1 1 0
chr19:18483830|18483990 hsa-miR-4763-3p 1 1 0
chr19:18483830|18483990 hsa-miR-6787-5p 1 0 0
chr19:18483830|18483990 hsa-miR-6870-5p 1 0 0
chr19:18483830|18483990 hsa-miR-6893-5p 1 1 0
chr19:18483830|18483990 hsa-miR-6775-5p 1 0 0
chr19:18483830|18483990 hsa-miR-1343-5p 1 0 0
chr19:18483830|18483990 hsa-miR-6743-5p 1 0 0
chr19:18483830|18483990 hsa-miR-6752-5p 1 0 0
chr19:18483830|18483990 hsa-miR-6754-5p 1 0 0
chr19:18483830|18483990 hsa-miR-6756-5p 0 1 0
chr19:18483830|18483990 hsa-miR-6803-5p 1 1 0
chr19:18483830|18483990 hsa-miR-6851-5p 1 0 0
chr19:18483830|18483990 hsa-miR-7107-5p 1 0 0
chr19:18483830|18483990 hsa-miR-7110-5p 1 0 0
chr19:18483830|18483990 hsa-miR-6722-3p 1 0 0
chr19:18483830|18483990 hsa-miR-6751-5p 1 0 0
chr19:18483830|18483990 hsa-miR-6797-5p 1 0 0
chr19:18483830|18483990 hsa-miR-6808-5p 1 1 0
chr19:18483830|18483990 hsa-miR-6879-5p 1 1 0
chr19:18483830|18483990 hsa-miR-7111-5p 1 0 0
chr19:18483830|18483990 hsa-miR-5196-5p 1 0 0
chr19:18483830|18483990 hsa-miR-6780b-5p 1 0 0
chr19:18483830|18483990 hsa-miR-6836-5p 1 0 0
chr19:18483830|18483990 hsa-miR-10396b-5p 1 0 0
chr19:18483830|18483990 hsa-miR-10526-3p 1 0 0
chr19:18483830|18483990 hsa-miR-1909-3p 1 0 0
chr19:18483830|18483990 hsa-miR-328-5p 1 0 0
chr19:18483830|18483990 hsa-miR-4649-5p 1 0 0
chr19:18483830|18483990 hsa-miR-4725-3p 1 0 0
chr19:18483830|18483990 hsa-miR-6729-5p 1 0 0
chr19:18483830|18483990 hsa-miR-6738-5p 1 0 0
chr19:18483830|18483990 hsa-miR-675-5p 1 0 0
chr19:18483830|18483990 hsa-miR-6794-5p 1 0 0
chr19:18483830|18483990 hsa-miR-6795-5p 1 0 0
chr19:18483830|18483990 hsa-miR-6848-5p 1 0 0
chr19:18483830|18483990 hsa-miR-6858-5p 1 0 0
chr19:18483830|18483990 hsa-miR-6883-5p 1 0 0
chr19:18483830|18483990 hsa-miR-6887-5p 1 0 0
chr19:18483830|18483990 hsa-miR-4436b-3p 0 1 0
chr19:18483830|18483990 hsa-miR-4723-5p 1 0 0
chr19:18483830|18483990 hsa-miR-6831-5p 1 0 0
chr19:18483830|18483990 hsa-miR-6885-5p 1 0 0
chr19:18483830|18483990 hsa-miR-4758-5p 1 0 0
chr19:18483830|18483990 hsa-miR-6511a-5p 1 0 0
chr19:18483830|18483990 hsa-miR-6511b-5p 1 1 0
chr19:18483830|18483990 hsa-miR-3940-5p 1 0 0
chr19:18483830|18483990 hsa-miR-6731-5p 1 0 0
chr19:18483830|18483990 hsa-miR-3173-3p 1 0 0
chr19:18483830|18483990 hsa-miR-4747-5p 1 0 0
chr19:18483830|18483990 hsa-miR-6891-5p 1 0 0
chr19:18483830|18483990 hsa-miR-4716-3p 1 1 0
chr19:18483830|18483990 hsa-miR-6724-5p 1 0 0
chr19:18483830|18483990 hsa-miR-6791-5p 1 0 0
chr19:18483830|18483990 hsa-miR-6811-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:18483830|18483990
ORF Type ORF1
Protein Length 42
Nucleotide Length 126
Protein Sequence MGQSPGMAQACFQDSASQSHATHAWHKPSCQHLNFAFPPYYS
Nucleotide Sequence ATGGGTCAATCTCCAGGCATGGCCCAGGCCTGCTTCCAGGACAGTGCATCTCAGAGCCATGCAACCCATGCCTGGCACAAGCCCTCCTGCCAACACCTTAACTTTGCCTTTCCCCCTTATTATTCC
CircID chr19:18483830|18483990
ORF Type ORF2
Protein Length 53
Nucleotide Length 159
Protein Sequence LPALPTLPAPPWVNLQAWPRPASRTVHLRAMQPMPGTSPPANTLTLPFPLIIP
Nucleotide Sequence CTGCCTGCCCTGCCCACCCTGCCTGCACCTCCATGGGTCAATCTCCAGGCATGGCCCAGGCCTGCTTCCAGGACAGTGCATCTCAGAGCCATGCAACCCATGCCTGGCACAAGCCCTCCTGCCAACACCTTAACTTTGCCTTTCCCCCTTATTATTCCA
CircID chr19:18483830|18483990
ORF Type ORF3
Protein Length 42
Nucleotide Length 129
Protein Sequence MPCPPCLHLHGSISRHGPGLLPGQCISEPCNPCLAQALLPTP
Nucleotide Sequence CTGCCCTGCCCACCCTGCCTGCACCTCCATGGGTCAATCTCCAGGCATGGCCCAGGCCTGCTTCCAGGACAGTGCATCTCAGAGCCATGCAACCCATGCCTGGCACAAGCCCTCCTGCCAACACCTTAA
CircID chr19:18483830|18483990
ORF Type ORF4
Protein Length 32
Nucleotide Length 96
Protein Sequence MHGSEMHCPGSRPGPCLEIDPWRCRQGGQGRQ
Nucleotide Sequence TTGCATGGCTCTGAGATGCACTGTCCTGGAAGCAGGCCTGGGCCATGCCTGGAGATTGACCCATGGAGGTGCAGGCAGGGTGGGCAGGGCAGGCAG
CircID chr19:18483830|18483990
ORF Type ORF5
Protein Length 42
Nucleotide Length 126
Protein Sequence MAGGLVPGMGCMALRCTVLEAGLGHAWRLTHGGAGRVGRAGR
Nucleotide Sequence TTGGCAGGAGGGCTTGTGCCAGGCATGGGTTGCATGGCTCTGAGATGCACTGTCCTGGAAGCAGGCCTGGGCCATGCCTGGAGATTGACCCATGGAGGTGCAGGCAGGGTGGGCAGGGCAGGCAGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab