CircRNA Information

General Information
circRNA Basic Information
CircID chr19:18785805|18786061
Strand -
CircType exon
Host Gene ENSG00000105664.9;
Algorism CIRI2;
Sequence CTTGTCTGCATCAAAGTCGTCCTGGCACACGTCGCCCACGCCGTCCCCTGAGAGGTGGGAGACCCCTCGGTGGGCTAAAGTCAGGGCCCGCCCACCGTAGACCCCGCGCCAGGAGCCCCCACTGGCCCCGCCCCCACCGCAGGCCCCGCCCCCGCCGTACTGTCCGCGTCCTCCTGGCCGGGGTTAGGCACCAGGCGGCAGTTGTCCCGACTGTCAGGGACTCCGTCATTGTCGTCGTCGTCGTCGCAGGCATCACC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:18785805|18786061 hsa-miR-150-5p 0 0 1
chr19:18785805|18786061 hsa-miR-150-3p 0 0 1
chr19:18785805|18786061 hsa-miR-541-5p 0 0 1
chr19:18785805|18786061 hsa-miR-541-3p 0 0 1
chr19:18785805|18786061 hsa-miR-744-5p 0 0 1
chr19:18785805|18786061 hsa-miR-744-3p 0 0 1
chr19:18785805|18786061 hsa-miR-665 0 1 1
chr19:18785805|18786061 hsa-miR-1227-5p 0 0 1
chr19:18785805|18786061 hsa-miR-1227-3p 0 0 1
chr19:18785805|18786061 hsa-miR-1291 0 1 1
chr19:18785805|18786061 hsa-miR-1266-5p 0 0 1
chr19:18785805|18786061 hsa-miR-1266-3p 0 0 1
chr19:18785805|18786061 hsa-miR-532-3p 0 0 1
chr19:18785805|18786061 hsa-miR-1289 0 0 1
chr19:18785805|18786061 hsa-miR-654-5p 0 0 1
chr19:18785805|18786061 hsa-miR-1224-3p 0 0 1
chr19:18785805|18786061 hsa-miR-125a-5p 0 0 1
chr19:18785805|18786061 hsa-miR-1260 0 0 1
chr19:18785805|18786061 hsa-miR-1280 0 0 1
chr19:18785805|18786061 hsa-miR-125b 0 0 1
chr19:18785805|18786061 hsa-miR-663 0 0 1
chr19:18785805|18786061 hsa-miR-549 0 0 1
chr19:18785805|18786061 hsa-miR-101 0 0 1
chr19:18785805|18786061 hsa-miR-608 1 0 0
chr19:18785805|18786061 hsa-miR-637 1 0 0
chr19:18785805|18786061 hsa-miR-638 1 0 0
chr19:18785805|18786061 hsa-miR-663a 1 1 0
chr19:18785805|18786061 hsa-miR-658 1 0 0
chr19:18785805|18786061 hsa-miR-762 1 0 0
chr19:18785805|18786061 hsa-miR-1260a 0 1 0
chr19:18785805|18786061 hsa-miR-1268a 1 0 0
chr19:18785805|18786061 hsa-miR-1469 1 0 0
chr19:18785805|18786061 hsa-miR-2861 1 1 0
chr19:18785805|18786061 hsa-miR-3138 1 1 0
chr19:18785805|18786061 hsa-miR-3141 1 0 0
chr19:18785805|18786061 hsa-miR-1273c 0 1 0
chr19:18785805|18786061 hsa-miR-3196 1 1 0
chr19:18785805|18786061 hsa-miR-4304 1 0 0
chr19:18785805|18786061 hsa-miR-1268b 1 1 0
chr19:18785805|18786061 hsa-miR-4440 1 0 0
chr19:18785805|18786061 hsa-miR-4447 0 1 0
chr19:18785805|18786061 hsa-miR-4462 1 0 0
chr19:18785805|18786061 hsa-miR-4466 1 0 0
chr19:18785805|18786061 hsa-miR-4467 1 0 0
chr19:18785805|18786061 hsa-miR-4488 1 1 0
chr19:18785805|18786061 hsa-miR-4505 1 0 0
chr19:18785805|18786061 hsa-miR-4508 1 0 0
chr19:18785805|18786061 hsa-miR-4525 1 0 0
chr19:18785805|18786061 hsa-miR-4526 0 1 0
chr19:18785805|18786061 hsa-miR-3960 1 0 0
chr19:18785805|18786061 hsa-miR-4651 1 0 0
chr19:18785805|18786061 hsa-miR-4682 1 0 0
chr19:18785805|18786061 hsa-miR-4706 1 0 0
chr19:18785805|18786061 hsa-miR-4734 1 0 0
chr19:18785805|18786061 hsa-miR-4737 1 0 0
chr19:18785805|18786061 hsa-miR-4739 1 0 0
chr19:18785805|18786061 hsa-miR-4754 1 0 0
chr19:18785805|18786061 hsa-miR-5090 1 0 0
chr19:18785805|18786061 hsa-miR-5708 1 0 0
chr19:18785805|18786061 hsa-miR-5787 1 0 0
chr19:18785805|18786061 hsa-miR-7704 1 0 0
chr19:18785805|18786061 hsa-miR-7976 0 1 0
chr19:18785805|18786061 hsa-miR-8072 1 0 0
chr19:18785805|18786061 hsa-miR-8089 1 0 0
chr19:18785805|18786061 hsa-miR-12119 1 0 0
chr19:18785805|18786061 hsa-miR-6840-3p 1 0 0
chr19:18785805|18786061 hsa-miR-629-5p 0 1 0
chr19:18785805|18786061 hsa-miR-6765-5p 1 0 0
chr19:18785805|18786061 hsa-miR-6894-5p 1 0 0
chr19:18785805|18786061 hsa-miR-6089 1 0 0
chr19:18785805|18786061 hsa-miR-1225-3p 1 0 0
chr19:18785805|18786061 hsa-miR-6757-5p 1 0 0
chr19:18785805|18786061 hsa-miR-6727-5p 1 1 0
chr19:18785805|18786061 hsa-miR-3151-5p 1 0 0
chr19:18785805|18786061 hsa-miR-3180-3p 1 1 0
chr19:18785805|18786061 hsa-miR-6732-5p 1 0 0
chr19:18785805|18786061 hsa-miR-6805-5p 1 1 0
chr19:18785805|18786061 hsa-miR-23a-5p 0 1 0
chr19:18785805|18786061 hsa-miR-6798-5p 1 0 0
chr19:18785805|18786061 hsa-miR-6782-5p 1 0 0
chr19:18785805|18786061 hsa-miR-5006-5p 1 1 0
chr19:18785805|18786061 hsa-miR-4713-5p 0 1 0
chr19:18785805|18786061 hsa-miR-615-5p 1 1 0
chr19:18785805|18786061 hsa-miR-6786-5p 1 1 0
chr19:18785805|18786061 hsa-miR-6853-5p 0 1 0
chr19:18785805|18786061 hsa-miR-4640-5p 0 1 0
chr19:18785805|18786061 hsa-miR-1908-5p 1 1 0
chr19:18785805|18786061 hsa-miR-1228-5p 1 1 0
chr19:18785805|18786061 hsa-miR-92b-5p 1 0 0
chr19:18785805|18786061 hsa-miR-3677-3p 1 0 0
chr19:18785805|18786061 hsa-miR-6749-5p 1 1 0
chr19:18785805|18786061 hsa-miR-6847-5p 1 0 0
chr19:18785805|18786061 hsa-miR-3648 1 0 0
chr19:18785805|18786061 hsa-miR-4787-5p 1 0 0
chr19:18785805|18786061 hsa-miR-6717-5p 1 0 0
chr19:18785805|18786061 hsa-miR-6824-5p 1 0 0
chr19:18785805|18786061 hsa-miR-6789-5p 1 0 0
chr19:18785805|18786061 hsa-miR-6800-5p 1 0 0
chr19:18785805|18786061 hsa-miR-194-3p 0 1 0
chr19:18785805|18786061 hsa-miR-7160-3p 1 1 0
chr19:18785805|18786061 hsa-miR-3191-3p 1 1 0
chr19:18785805|18786061 hsa-miR-4707-5p 1 1 0
chr19:18785805|18786061 hsa-miR-6811-3p 1 0 0
chr19:18785805|18786061 hsa-miR-4732-3p 0 1 0
chr19:18785805|18786061 hsa-miR-4746-3p 1 0 0
chr19:18785805|18786061 hsa-miR-2277-5p 1 1 0
chr19:18785805|18786061 hsa-miR-3186-3p 1 0 0
chr19:18785805|18786061 hsa-miR-6800-3p 0 1 0
chr19:18785805|18786061 hsa-miR-10400-5p 1 0 0
chr19:18785805|18786061 hsa-miR-4763-3p 1 0 0
chr19:18785805|18786061 hsa-miR-6769b-5p 1 0 0
chr19:18785805|18786061 hsa-miR-6787-5p 1 1 0
chr19:18785805|18786061 hsa-miR-6816-5p 1 1 0
chr19:18785805|18786061 hsa-miR-6775-5p 1 0 0
chr19:18785805|18786061 hsa-miR-3180 1 1 0
chr19:18785805|18786061 hsa-miR-6737-5p 1 0 0
chr19:18785805|18786061 hsa-miR-6752-5p 1 1 0
chr19:18785805|18786061 hsa-miR-6756-5p 1 1 0
chr19:18785805|18786061 hsa-miR-6803-5p 1 1 0
chr19:18785805|18786061 hsa-miR-6819-5p 1 0 0
chr19:18785805|18786061 hsa-miR-6842-5p 1 0 0
chr19:18785805|18786061 hsa-miR-6851-5p 1 0 0
chr19:18785805|18786061 hsa-miR-10401-5p 1 0 0
chr19:18785805|18786061 hsa-miR-6722-3p 0 1 0
chr19:18785805|18786061 hsa-miR-6751-5p 1 1 0
chr19:18785805|18786061 hsa-miR-1915-3p 1 0 0
chr19:18785805|18786061 hsa-miR-6836-5p 1 0 0
chr19:18785805|18786061 hsa-miR-10396a-5p 1 1 0
chr19:18785805|18786061 hsa-miR-10396b-5p 1 1 0
chr19:18785805|18786061 hsa-miR-1237-5p 1 1 0
chr19:18785805|18786061 hsa-miR-1909-3p 1 0 0
chr19:18785805|18786061 hsa-miR-4649-5p 1 0 0
chr19:18785805|18786061 hsa-miR-4685-5p 1 0 0
chr19:18785805|18786061 hsa-miR-4701-3p 1 0 0
chr19:18785805|18786061 hsa-miR-4725-3p 1 0 0
chr19:18785805|18786061 hsa-miR-4726-5p 1 1 0
chr19:18785805|18786061 hsa-miR-4745-5p 1 1 0
chr19:18785805|18786061 hsa-miR-4749-5p 1 0 0
chr19:18785805|18786061 hsa-miR-6729-5p 1 0 0
chr19:18785805|18786061 hsa-miR-6777-5p 1 0 0
chr19:18785805|18786061 hsa-miR-6794-5p 1 0 0
chr19:18785805|18786061 hsa-miR-6795-5p 1 0 0
chr19:18785805|18786061 hsa-miR-6846-5p 1 0 0
chr19:18785805|18786061 hsa-miR-6848-5p 1 0 0
chr19:18785805|18786061 hsa-miR-6887-5p 1 0 0
chr19:18785805|18786061 hsa-miR-4697-5p 1 1 0
chr19:18785805|18786061 hsa-miR-10394-3p 1 0 0
chr19:18785805|18786061 hsa-miR-1914-3p 1 1 0
chr19:18785805|18786061 hsa-miR-4665-5p 1 0 0
chr19:18785805|18786061 hsa-miR-4472 0 1 0
chr19:18785805|18786061 hsa-miR-6785-5p 1 0 0
chr19:18785805|18786061 hsa-miR-6762-5p 0 1 0
chr19:18785805|18786061 hsa-miR-6775-3p 0 1 0
chr19:18785805|18786061 hsa-miR-10523-5p 0 1 0
chr19:18785805|18786061 hsa-miR-301a-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:18785805|18786061
ORF Type ORF1
Protein Length 32
Nucleotide Length 96
Protein Sequence MSASSWPGLGTRRQLSRLSGTPSLSSSSSQAS
Nucleotide Sequence CTGTCCGCGTCCTCCTGGCCGGGGTTAGGCACCAGGCGGCAGTTGTCCCGACTGTCAGGGACTCCGTCATTGTCGTCGTCGTCGTCGCAGGCATCA
CircID chr19:18785805|18786061
ORF Type ORF2
Protein Length 32
Nucleotide Length 99
Protein Sequence LSASKSSWHTSPTPSPERWETPRWAKVRARPP
Nucleotide Sequence TTGTCTGCATCAAAGTCGTCCTGGCACACGTCGCCCACGCCGTCCCCTGAGAGGTGGGAGACCCCTCGGTGGGCTAAAGTCAGGGCCCGCCCACCGTAG
CircID chr19:18785805|18786061
ORF Type ORF3
Protein Length 84
Nucleotide Length 252
Protein Sequence MHQSRPGTRRPRRPLRGGRPLGGLKSGPAHRRPRARSPHWPRPHRRPRPRRTVRVLLAGVRHQAAVVPTVRDSVIVVVVVAGIT
Nucleotide Sequence CTGCATCAAAGTCGTCCTGGCACACGTCGCCCACGCCGTCCCCTGAGAGGTGGGAGACCCCTCGGTGGGCTAAAGTCAGGGCCCGCCCACCGTAGACCCCGCGCCAGGAGCCCCCACTGGCCCCGCCCCCACCGCAGGCCCCGCCCCCGCCGTACTGTCCGCGTCCTCCTGGCCGGGGTTAGGCACCAGGCGGCAGTTGTCCCGACTGTCAGGGACTCCGTCATTGTCGTCGTCGTCGTCGCAGGCATCACC
CircID chr19:18785805|18786061
ORF Type ORF4
Protein Length 37
Nucleotide Length 114
Protein Sequence MVPNPGQEDADSTAGAGPAVGAGPVGAPGAGSTVGGP
Nucleotide Sequence CTGGTGCCTAACCCCGGCCAGGAGGACGCGGACAGTACGGCGGGGGCGGGGCCTGCGGTGGGGGCGGGGCCAGTGGGGGCTCCTGGCGCGGGGTCTACGGTGGGCGGGCCCTGA
CircID chr19:18785805|18786061
ORF Type ORF5
Protein Length 80
Nucleotide Length 243
Protein Sequence MPATTTTTMTESLTVGTTAAWCLTPARRTRTVRRGRGLRWGRGQWGLLARGLRWAGPDFSPPRGLPPLRGRRGRRVPGRL
Nucleotide Sequence ATGCCTGCGACGACGACGACGACAATGACGGAGTCCCTGACAGTCGGGACAACTGCCGCCTGGTGCCTAACCCCGGCCAGGAGGACGCGGACAGTACGGCGGGGGCGGGGCCTGCGGTGGGGGCGGGGCCAGTGGGGGCTCCTGGCGCGGGGTCTACGGTGGGCGGGCCCTGACTTTAGCCCACCGAGGGGTCTCCCACCTCTCAGGGGACGGCGTGGGCGACGTGTGCCAGGACGACTTTGA
CircID chr19:18785805|18786061
ORF Type ORF6
Protein Length 28
Nucleotide Length 84
Protein Sequence MTLAHRGVSHLSGDGVGDVCQDDFDADK
Nucleotide Sequence CTGACTTTAGCCCACCGAGGGGTCTCCCACCTCTCAGGGGACGGCGTGGGCGACGTGTGCCAGGACGACTTTGATGCAGACAAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab