CircRNA Information

General Information
circRNA Basic Information
CircID chr19:18919223|18919372
Strand -
CircType exon
Host Gene ENSG00000105669.11;
Algorism CIRI2;
Sequence CTTCACCCGCTGCGCCTCGTTTATGCACTGCTGGTAGCTGCCGATGTAGAAGGCGTTCTTTACGTCGAACAGCTCGTCTACCTCCCCGGAGCCGCCGGAGGCCGGGCCGGGGGCCGGAGGCGCCATTTCGCTGTCTTCTCACCAGCTCCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:18919223|18919372 hsa-let-7b-5p 0 0 1
chr19:18919223|18919372 hsa-let-7b-3p 0 0 1
chr19:18919223|18919372 hsa-let-7c-5p 0 0 1
chr19:18919223|18919372 hsa-let-7c-3p 0 0 1
chr19:18919223|18919372 hsa-let-7d-5p 0 0 1
chr19:18919223|18919372 hsa-let-7d-3p 0 0 1
chr19:18919223|18919372 hsa-let-7e-5p 0 0 1
chr19:18919223|18919372 hsa-let-7e-3p 0 0 1
chr19:18919223|18919372 hsa-miR-98-5p 0 0 1
chr19:18919223|18919372 hsa-miR-98-3p 0 0 1
chr19:18919223|18919372 hsa-miR-148a-5p 0 0 1
chr19:18919223|18919372 hsa-miR-148a-3p 0 0 1
chr19:18919223|18919372 hsa-let-7g-5p 0 0 1
chr19:18919223|18919372 hsa-let-7g-3p 0 0 1
chr19:18919223|18919372 hsa-let-7i-5p 0 0 1
chr19:18919223|18919372 hsa-let-7i-3p 0 0 1
chr19:18919223|18919372 hsa-miR-152-5p 0 0 1
chr19:18919223|18919372 hsa-miR-152-3p 0 0 1
chr19:18919223|18919372 hsa-miR-186-5p 0 0 1
chr19:18919223|18919372 hsa-miR-186-3p 0 0 1
chr19:18919223|18919372 hsa-miR-379-5p 0 0 1
chr19:18919223|18919372 hsa-miR-379-3p 0 0 1
chr19:18919223|18919372 hsa-miR-148b-5p 0 0 1
chr19:18919223|18919372 hsa-miR-148b-3p 0 0 1
chr19:18919223|18919372 hsa-miR-614 0 1 1
chr19:18919223|18919372 hsa-miR-634 0 0 1
chr19:18919223|18919372 hsa-miR-652-5p 0 0 1
chr19:18919223|18919372 hsa-miR-652-3p 0 0 1
chr19:18919223|18919372 hsa-miR-708-5p 0 0 1
chr19:18919223|18919372 hsa-miR-708-3p 0 0 1
chr19:18919223|18919372 hsa-miR-1253 0 0 1
chr19:18919223|18919372 hsa-miR-1281 0 1 1
chr19:18919223|18919372 hsa-miR-566 0 0 1
chr19:18919223|18919372 hsa-miR-28-5p 0 0 1
chr19:18919223|18919372 hsa-miR-138 0 0 1
chr19:18919223|18919372 hsa-let-7a 0 0 1
chr19:18919223|18919372 hsa-let-7f 0 0 1
chr19:18919223|18919372 hsa-miR-1300 0 0 1
chr19:18919223|18919372 hsa-miR-886-3p 0 0 1
chr19:18919223|18919372 hsa-miR-608 1 0 0
chr19:18919223|18919372 hsa-miR-762 1 0 0
chr19:18919223|18919372 hsa-miR-1202 1 0 0
chr19:18919223|18919372 hsa-miR-1538 1 1 0
chr19:18919223|18919372 hsa-miR-3185 1 0 0
chr19:18919223|18919372 hsa-miR-3197 0 1 0
chr19:18919223|18919372 hsa-miR-4299 0 1 0
chr19:18919223|18919372 hsa-miR-4487 1 1 0
chr19:18919223|18919372 hsa-miR-4489 1 0 0
chr19:18919223|18919372 hsa-miR-4492 1 0 0
chr19:18919223|18919372 hsa-miR-4519 0 1 0
chr19:18919223|18919372 hsa-miR-3960 1 0 0
chr19:18919223|18919372 hsa-miR-6131 1 0 0
chr19:18919223|18919372 hsa-miR-138-5p 1 0 0
chr19:18919223|18919372 hsa-miR-6836-3p 0 1 0
chr19:18919223|18919372 hsa-miR-6825-5p 0 1 0
chr19:18919223|18919372 hsa-miR-4687-3p 1 0 0
chr19:18919223|18919372 hsa-miR-6799-5p 0 1 0
chr19:18919223|18919372 hsa-miR-6842-3p 1 0 0
chr19:18919223|18919372 hsa-miR-185-3p 1 0 0
chr19:18919223|18919372 hsa-miR-4697-3p 1 0 0
chr19:18919223|18919372 hsa-miR-6829-5p 1 0 0
chr19:18919223|18919372 hsa-miR-7855-5p 1 0 0
chr19:18919223|18919372 hsa-miR-2277-3p 1 0 0
chr19:18919223|18919372 hsa-miR-1908-3p 1 0 0
chr19:18919223|18919372 hsa-miR-885-3p 1 0 0
chr19:18919223|18919372 hsa-miR-3160-3p 1 0 0
chr19:18919223|18919372 hsa-miR-4446-3p 1 0 0
chr19:18919223|18919372 hsa-miR-4707-5p 1 1 0
chr19:18919223|18919372 hsa-let-7a-5p 0 1 0
chr19:18919223|18919372 hsa-miR-4746-3p 1 0 0
chr19:18919223|18919372 hsa-miR-214-3p 1 0 0
chr19:18919223|18919372 hsa-miR-6816-5p 1 0 0
chr19:18919223|18919372 hsa-miR-6775-5p 1 0 0
chr19:18919223|18919372 hsa-miR-5001-5p 1 0 0
chr19:18919223|18919372 hsa-miR-6842-5p 1 0 0
chr19:18919223|18919372 hsa-miR-6851-5p 1 0 0
chr19:18919223|18919372 hsa-miR-3620-5p 1 0 0
chr19:18919223|18919372 hsa-miR-449c-5p 1 0 0
chr19:18919223|18919372 hsa-miR-4745-3p 0 1 0
chr19:18919223|18919372 hsa-miR-6777-5p 0 1 0
chr19:18919223|18919372 hsa-miR-6856-5p 1 0 0
chr19:18919223|18919372 hsa-miR-4700-5p 0 1 0
chr19:18919223|18919372 hsa-miR-6849-5p 1 0 0
chr19:18919223|18919372 hsa-miR-3529-5p 0 1 0
chr19:18919223|18919372 hsa-miR-10392-3p 1 1 0
chr19:18919223|18919372 hsa-miR-6500-5p 1 0 0
chr19:18919223|18919372 hsa-miR-3619-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:18919223|18919372
ORF Type ORF1
Protein Length 47
Nucleotide Length 141
Protein Sequence MRLVYALLVAADVEGVLYVEQLVYLPGAAGGRAGGRRRHFAVFSPAP
Nucleotide Sequence CTGCGCCTCGTTTATGCACTGCTGGTAGCTGCCGATGTAGAAGGCGTTCTTTACGTCGAACAGCTCGTCTACCTCCCCGGAGCCGCCGGAGGCCGGGCCGGGGGCCGGAGGCGCCATTTCGCTGTCTTCTCACCAGCTCCT
CircID chr19:18919223|18919372
ORF Type ORF2
Protein Length 42
Nucleotide Length 126
Protein Sequence MAPPAPGPASGGSGEVDELFDVKNAFYIGSYQQCINEAQRVK
Nucleotide Sequence ATGGCGCCTCCGGCCCCCGGCCCGGCCTCCGGCGGCTCCGGGGAGGTAGACGAGCTGTTCGACGTAAAGAACGCCTTCTACATCGGCAGCTACCAGCAGTGCATAAACGAGGCGCAGCGGGTGAAG
CircID chr19:18919223|18919372
ORF Type ORF3
Protein Length 48
Nucleotide Length 144
Protein Sequence MVRRQRNGASGPRPGLRRLRGGRRAVRRKERLLHRQLPAVHKRGAAGE
Nucleotide Sequence CTGGTGAGAAGACAGCGAAATGGCGCCTCCGGCCCCCGGCCCGGCCTCCGGCGGCTCCGGGGAGGTAGACGAGCTGTTCGACGTAAAGAACGCCTTCTACATCGGCAGCTACCAGCAGTGCATAAACGAGGCGCAGCGGGTGAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab