CircRNA Information

General Information
circRNA Basic Information
CircID chr19:18931351|18931571
Strand -
CircType exon
Host Gene ENSG00000268193.4;
Algorism CIRI2;
Sequence GCTCGGCAGCCTCCAGGGCCTCGCGGGGCCCCCCAGTCTGACTCTTCAGGGTCTGAATCTCCTAGAGGAGAAGAGTTCCCAGGGTCTGTTGCGGGGGTCCTGGCTTTCCCACAGGAGGTGAGGGAAGGCGAGGCCCAGGAACCACACTTGGCACTCACCTGGTCCTTGGTTTGCACCAGAGCTTCCAGCTGTTCCAGCGACTGGCCCTGGCCCAGCCCCTC
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:18931351|18931571 hsa-miR-19a-5p 0 0 1
chr19:18931351|18931571 hsa-miR-19a-3p 0 0 1
chr19:18931351|18931571 hsa-miR-504-5p 0 0 1
chr19:18931351|18931571 hsa-miR-504-3p 0 0 1
chr19:18931351|18931571 hsa-miR-595 0 0 1
chr19:18931351|18931571 hsa-miR-637 0 1 1
chr19:18931351|18931571 hsa-miR-650 0 0 1
chr19:18931351|18931571 hsa-miR-942-5p 0 0 1
chr19:18931351|18931571 hsa-miR-942-3p 0 0 1
chr19:18931351|18931571 hsa-miR-1291 0 0 1
chr19:18931351|18931571 hsa-miR-1292-5p 0 0 1
chr19:18931351|18931571 hsa-miR-1292-3p 0 0 1
chr19:18931351|18931571 hsa-miR-671-5p 1 0 1
chr19:18931351|18931571 hsa-miR-125a-3p 1 0 1
chr19:18931351|18931571 hsa-miR-296-5p 0 1 1
chr19:18931351|18931571 hsa-miR-485-5p 0 0 1
chr19:18931351|18931571 hsa-miR-423-5p 0 0 1
chr19:18931351|18931571 hsa-miR-1207-3p 0 0 1
chr19:18931351|18931571 hsa-miR-642 0 0 1
chr19:18931351|18931571 hsa-miR-19b 0 0 1
chr19:18931351|18931571 hsa-miR-612 1 0 0
chr19:18931351|18931571 hsa-miR-762 1 1 0
chr19:18931351|18931571 hsa-miR-548q 0 1 0
chr19:18931351|18931571 hsa-miR-3131 1 0 0
chr19:18931351|18931571 hsa-miR-3153 0 1 0
chr19:18931351|18931571 hsa-miR-3918 0 1 0
chr19:18931351|18931571 hsa-miR-3135b 1 0 0
chr19:18931351|18931571 hsa-miR-4463 0 1 0
chr19:18931351|18931571 hsa-miR-4492 0 1 0
chr19:18931351|18931571 hsa-miR-4498 1 1 0
chr19:18931351|18931571 hsa-miR-4505 1 1 0
chr19:18931351|18931571 hsa-miR-4507 1 0 0
chr19:18931351|18931571 hsa-miR-4508 1 0 0
chr19:18931351|18931571 hsa-miR-1587 1 0 0
chr19:18931351|18931571 hsa-miR-4660 1 0 0
chr19:18931351|18931571 hsa-miR-4689 0 1 0
chr19:18931351|18931571 hsa-miR-5787 0 1 0
chr19:18931351|18931571 hsa-miR-6069 1 0 0
chr19:18931351|18931571 hsa-miR-6079 0 1 0
chr19:18931351|18931571 hsa-miR-6081 1 0 0
chr19:18931351|18931571 hsa-miR-6085 1 1 0
chr19:18931351|18931571 hsa-miR-134-3p 0 1 0
chr19:18931351|18931571 hsa-miR-6089 1 0 0
chr19:18931351|18931571 hsa-miR-6721-5p 1 0 0
chr19:18931351|18931571 hsa-miR-5589-5p 1 0 0
chr19:18931351|18931571 hsa-miR-7845-5p 1 0 0
chr19:18931351|18931571 hsa-miR-4725-5p 0 1 0
chr19:18931351|18931571 hsa-miR-6888-5p 0 1 0
chr19:18931351|18931571 hsa-miR-5008-5p 0 1 0
chr19:18931351|18931571 hsa-miR-5006-5p 1 0 0
chr19:18931351|18931571 hsa-miR-345-3p 0 1 0
chr19:18931351|18931571 hsa-miR-1343-3p 0 1 0
chr19:18931351|18931571 hsa-miR-615-5p 0 1 0
chr19:18931351|18931571 hsa-miR-939-3p 0 1 0
chr19:18931351|18931571 hsa-miR-7109-5p 0 1 0
chr19:18931351|18931571 hsa-miR-4640-5p 1 1 0
chr19:18931351|18931571 hsa-miR-6803-3p 0 1 0
chr19:18931351|18931571 hsa-miR-296-3p 1 0 0
chr19:18931351|18931571 hsa-miR-4776-5p 1 0 0
chr19:18931351|18931571 hsa-miR-6895-5p 0 1 0
chr19:18931351|18931571 hsa-miR-660-3p 0 1 0
chr19:18931351|18931571 hsa-miR-6513-3p 0 1 0
chr19:18931351|18931571 hsa-miR-551b-5p 0 1 0
chr19:18931351|18931571 hsa-miR-6859-3p 0 1 0
chr19:18931351|18931571 hsa-miR-6880-3p 0 1 0
chr19:18931351|18931571 hsa-miR-3124-3p 0 1 0
chr19:18931351|18931571 hsa-miR-6734-3p 0 1 0
chr19:18931351|18931571 hsa-miR-1233-5p 0 1 0
chr19:18931351|18931571 hsa-miR-4763-3p 1 0 0
chr19:18931351|18931571 hsa-miR-6816-5p 1 0 0
chr19:18931351|18931571 hsa-miR-5001-5p 1 1 0
chr19:18931351|18931571 hsa-miR-6743-5p 1 0 0
chr19:18931351|18931571 hsa-miR-6756-5p 1 0 0
chr19:18931351|18931571 hsa-miR-6813-5p 1 1 0
chr19:18931351|18931571 hsa-miR-3620-5p 1 1 0
chr19:18931351|18931571 hsa-miR-6836-5p 1 0 0
chr19:18931351|18931571 hsa-miR-10396a-5p 1 0 0
chr19:18931351|18931571 hsa-miR-10396b-5p 1 0 0
chr19:18931351|18931571 hsa-miR-1237-5p 1 0 0
chr19:18931351|18931571 hsa-miR-328-5p 0 1 0
chr19:18931351|18931571 hsa-miR-4649-5p 1 0 0
chr19:18931351|18931571 hsa-miR-4685-5p 1 1 0
chr19:18931351|18931571 hsa-miR-4726-5p 1 1 0
chr19:18931351|18931571 hsa-miR-6729-5p 1 0 0
chr19:18931351|18931571 hsa-miR-6846-5p 1 0 0
chr19:18931351|18931571 hsa-miR-6848-5p 1 1 0
chr19:18931351|18931571 hsa-miR-6885-5p 0 1 0
chr19:18931351|18931571 hsa-miR-3940-5p 1 0 0
chr19:18931351|18931571 hsa-miR-6724-5p 1 0 0
chr19:18931351|18931571 hsa-miR-6762-5p 1 0 0
chr19:18931351|18931571 hsa-miR-10401-3p 0 1 0
chr19:18931351|18931571 hsa-miR-6837-5p 1 1 0
chr19:18931351|18931571 hsa-miR-6775-3p 0 1 0
chr19:18931351|18931571 hsa-miR-6823-3p 0 1 0
chr19:18931351|18931571 hsa-miR-6783-3p 0 1 0
chr19:18931351|18931571 hsa-miR-6806-3p 0 1 0
chr19:18931351|18931571 hsa-miR-6733-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr19:18931351|18931571
ORF Type ORF1
Protein Length 40
Nucleotide Length 120
Protein Sequence MAFPQEVREGEAQEPHLALTWSLVCTRASSCSSDWPWPSP
Nucleotide Sequence CTGGCTTTCCCACAGGAGGTGAGGGAAGGCGAGGCCCAGGAACCACACTTGGCACTCACCTGGTCCTTGGTTTGCACCAGAGCTTCCAGCTGTTCCAGCGACTGGCCCTGGCCCAGCCCC
CircID chr19:18931351|18931571
ORF Type ORF2
Protein Length 27
Nucleotide Length 84
Protein Sequence MTLQGLNLLEEKSSQGLLRGSWLSHRR
Nucleotide Sequence CTGACTCTTCAGGGTCTGAATCTCCTAGAGGAGAAGAGTTCCCAGGGTCTGTTGCGGGGGTCCTGGCTTTCCCACAGGAGGTGA
CircID chr19:18931351|18931571
ORF Type ORF3
Protein Length 71
Nucleotide Length 213
Protein Sequence MGQGQSLEQLEALVQTKDQVSAKCGSWASPSLTSCGKARTPATDPGNSSPLGDSDPEESDWGAPRGPGGCR
Nucleotide Sequence CTGGGCCAGGGCCAGTCGCTGGAACAGCTGGAAGCTCTGGTGCAAACCAAGGACCAGGTGAGTGCCAAGTGTGGTTCCTGGGCCTCGCCTTCCCTCACCTCCTGTGGGAAAGCCAGGACCCCCGCAACAGACCCTGGGAACTCTTCTCCTCTAGGAGATTCAGACCCTGAAGAGTCAGACTGGGGGGCCCCGCGAGGCCCTGGAGGCTGCCGA
CircID chr19:18931351|18931571
ORF Type ORF4
Protein Length 30
Nucleotide Length 93
Protein Sequence MGLAFPHLLWESQDPRNRPWELFSSRRFRP
Nucleotide Sequence CTGGGCCTCGCCTTCCCTCACCTCCTGTGGGAAAGCCAGGACCCCCGCAACAGACCCTGGGAACTCTTCTCCTCTAGGAGATTCAGACCCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab