CircRNA Information

General Information
circRNA Basic Information
CircID chr19:19534330|19534501
Strand +
CircType exon
Host Gene ENSG00000250067.10;
Algorism CIRI2;
Sequence CTGTCTCTGGCTGTTTCTGTATCTCTCAGACTCTCTGTGTCTCTGTCTGTCTGTCTCTGTCTCTCTCCGTCTCTGGCCGTCTCTGTGTCTGTCTGTATCTCTCAGACTCTCTGTGTCTCTGGCTCTCTTTGTGTCTCTGTCTCTCTCCATCTGTCTCTGGCTGTCTCTGTGT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:19534330|19534501 hsa-miR-185-5p 0 0 1
chr19:19534330|19534501 hsa-miR-185-3p 0 0 1
chr19:19534330|19534501 hsa-miR-1324 0 0 1
chr19:19534330|19534501 hsa-miR-198 1 0 0
chr19:19534330|19534501 hsa-miR-184 1 0 0
chr19:19534330|19534501 hsa-miR-571 1 0 0
chr19:19534330|19534501 hsa-miR-575 1 0 0
chr19:19534330|19534501 hsa-miR-1182 0 1 0
chr19:19534330|19534501 hsa-miR-3125 1 0 0
chr19:19534330|19534501 hsa-miR-3132 1 0 0
chr19:19534330|19534501 hsa-miR-3138 1 0 0
chr19:19534330|19534501 hsa-miR-3154 1 0 0
chr19:19534330|19534501 hsa-miR-3174 0 1 0
chr19:19534330|19534501 hsa-miR-3175 1 1 0
chr19:19534330|19534501 hsa-miR-3197 1 0 0
chr19:19534330|19534501 hsa-miR-4298 1 0 0
chr19:19534330|19534501 hsa-miR-4306 1 1 0
chr19:19534330|19534501 hsa-miR-4311 0 1 0
chr19:19534330|19534501 hsa-miR-4269 1 0 0
chr19:19534330|19534501 hsa-miR-4270 1 1 0
chr19:19534330|19534501 hsa-miR-3918 1 0 0
chr19:19534330|19534501 hsa-miR-3937 1 0 0
chr19:19534330|19534501 hsa-miR-4428 1 0 0
chr19:19534330|19534501 hsa-miR-4430 1 0 0
chr19:19534330|19534501 hsa-miR-4462 1 1 0
chr19:19534330|19534501 hsa-miR-4533 1 0 0
chr19:19534330|19534501 hsa-miR-4534 1 0 0
chr19:19534330|19534501 hsa-miR-3960 1 0 0
chr19:19534330|19534501 hsa-miR-3976 0 1 0
chr19:19534330|19534501 hsa-miR-4644 1 1 0
chr19:19534330|19534501 hsa-miR-4689 1 0 0
chr19:19534330|19534501 hsa-miR-4779 1 0 0
chr19:19534330|19534501 hsa-miR-5091 1 1 0
chr19:19534330|19534501 hsa-miR-5192 1 0 0
chr19:19534330|19534501 hsa-miR-5739 1 1 0
chr19:19534330|19534501 hsa-miR-6088 1 0 0
chr19:19534330|19534501 hsa-miR-6127 1 0 0
chr19:19534330|19534501 hsa-miR-8085 1 1 0
chr19:19534330|19534501 hsa-miR-12119 1 1 0
chr19:19534330|19534501 hsa-miR-12122 1 0 0
chr19:19534330|19534501 hsa-miR-211-3p 1 1 0
chr19:19534330|19534501 hsa-miR-150-3p 1 0 0
chr19:19534330|19534501 hsa-miR-4435 1 0 0
chr19:19534330|19534501 hsa-miR-6765-5p 1 0 0
chr19:19534330|19534501 hsa-miR-25-5p 1 0 0
chr19:19534330|19534501 hsa-miR-139-3p 1 0 0
chr19:19534330|19534501 hsa-miR-1236-5p 1 0 0
chr19:19534330|19534501 hsa-miR-6515-5p 1 0 0
chr19:19534330|19534501 hsa-miR-6807-5p 1 1 0
chr19:19534330|19534501 hsa-miR-6757-5p 1 0 0
chr19:19534330|19534501 hsa-miR-6873-5p 1 0 0
chr19:19534330|19534501 hsa-miR-6880-5p 1 0 0
chr19:19534330|19534501 hsa-miR-6730-5p 1 0 0
chr19:19534330|19534501 hsa-miR-197-5p 1 0 0
chr19:19534330|19534501 hsa-miR-7845-5p 1 1 0
chr19:19534330|19534501 hsa-miR-1288-3p 1 0 0
chr19:19534330|19534501 hsa-miR-6827-5p 1 0 0
chr19:19534330|19534501 hsa-miR-3126-5p 1 1 0
chr19:19534330|19534501 hsa-miR-6760-5p 1 0 0
chr19:19534330|19534501 hsa-miR-2467-3p 1 1 0
chr19:19534330|19534501 hsa-miR-5006-5p 1 0 0
chr19:19534330|19534501 hsa-miR-4691-3p 1 0 0
chr19:19534330|19534501 hsa-miR-92b-5p 1 0 0
chr19:19534330|19534501 hsa-miR-4713-3p 1 0 0
chr19:19534330|19534501 hsa-miR-6834-5p 1 0 0
chr19:19534330|19534501 hsa-miR-4743-5p 1 0 0
chr19:19534330|19534501 hsa-miR-149-3p 1 0 0
chr19:19534330|19534501 hsa-miR-6781-5p 1 0 0
chr19:19534330|19534501 hsa-miR-6895-5p 1 1 0
chr19:19534330|19534501 hsa-miR-6801-5p 1 1 0
chr19:19534330|19534501 hsa-miR-7113-5p 0 1 0
chr19:19534330|19534501 hsa-miR-483-5p 1 0 0
chr19:19534330|19534501 hsa-miR-6767-5p 1 1 0
chr19:19534330|19534501 hsa-miR-6761-5p 1 1 0
chr19:19534330|19534501 hsa-miR-5007-5p 0 1 0
chr19:19534330|19534501 hsa-miR-1207-5p 1 0 0
chr19:19534330|19534501 hsa-miR-6812-5p 1 0 0
chr19:19534330|19534501 hsa-miR-1343-5p 1 0 0
chr19:19534330|19534501 hsa-miR-6754-5p 1 0 0
chr19:19534330|19534501 hsa-miR-6815-5p 1 0 0
chr19:19534330|19534501 hsa-miR-1249-5p 1 1 0
chr19:19534330|19534501 hsa-miR-6763-5p 1 0 0
chr19:19534330|19534501 hsa-miR-6797-5p 1 1 0
chr19:19534330|19534501 hsa-miR-6875-5p 1 0 0
chr19:19534330|19534501 hsa-miR-4728-5p 0 1 0
chr19:19534330|19534501 hsa-miR-642b-3p 1 0 0
chr19:19534330|19534501 hsa-miR-4726-5p 1 1 0
chr19:19534330|19534501 hsa-miR-6777-5p 1 0 0
chr19:19534330|19534501 hsa-miR-6889-5p 1 1 0
chr19:19534330|19534501 hsa-miR-6831-5p 1 0 0
chr19:19534330|19534501 hsa-miR-6845-5p 1 0 0
chr19:19534330|19534501 hsa-miR-3199 1 0 0
chr19:19534330|19534501 hsa-miR-1910-3p 1 1 0
chr19:19534330|19534501 hsa-miR-6511a-5p 1 1 0
chr19:19534330|19534501 hsa-miR-6731-5p 1 0 0
chr19:19534330|19534501 hsa-miR-6758-5p 1 0 0
chr19:19534330|19534501 hsa-miR-10398-3p 1 0 0
chr19:19534330|19534501 hsa-miR-6891-5p 1 0 0
chr19:19534330|19534501 hsa-miR-6785-5p 1 0 0
chr19:19534330|19534501 hsa-miR-4667-5p 1 0 0
chr19:19534330|19534501 hsa-miR-6529-5p 1 1 0
chr19:19534330|19534501 hsa-miR-6859-5p 1 0 0
chr19:19534330|19534501 hsa-miR-4676-5p 1 0 0
chr19:19534330|19534501 hsa-miR-642a-3p 1 0 0
chr19:19534330|19534501 hsa-miR-2682-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr19:19534330|19534501
ORF Type ORF1
Protein Length 57
Nucleotide Length 171
Protein Sequence LSLAVSVSLRLSVSLSVCLCLSPSLAVSVSVCISQTLCVSGSLCVSVSLHLSLAVSV
Nucleotide Sequence CTGTCTCTGGCTGTTTCTGTATCTCTCAGACTCTCTGTGTCTCTGTCTGTCTGTCTCTGTCTCTCTCCGTCTCTGGCCGTCTCTGTGTCTGTCTGTATCTCTCAGACTCTCTGTGTCTCTGGCTCTCTTTGTGTCTCTGTCTCTCTCCATCTGTCTCTGGCTGTCTCTGTG
CircID chr19:19534330|19534501
ORF Type ORF2
Protein Length 54
Nucleotide Length 162
Protein Sequence MFLYLSDSLCLCLSVSVSLRLWPSLCLSVSLRLSVSLALFVSLSLSICLWLSLC
Nucleotide Sequence CTGTTTCTGTATCTCTCAGACTCTCTGTGTCTCTGTCTGTCTGTCTCTGTCTCTCTCCGTCTCTGGCCGTCTCTGTGTCTGTCTGTATCTCTCAGACTCTCTGTGTCTCTGGCTCTCTTTGTGTCTCTGTCTCTCTCCATCTGTCTCTGGCTGTCTCTGTGT
CircID chr19:19534330|19534501
ORF Type ORF3
Protein Length 40
Nucleotide Length 120
Protein Sequence MSLSLSVSGRLCVCLYLSDSLCLWLSLCLCLSPSVSGCLC
Nucleotide Sequence CTGTCTCTGTCTCTCTCCGTCTCTGGCCGTCTCTGTGTCTGTCTGTATCTCTCAGACTCTCTGTGTCTCTGGCTCTCTTTGTGTCTCTGTCTCTCTCCATCTGTCTCTGGCTGTCTCTGT
CircID chr19:19534330|19534501
ORF Type ORF4
Protein Length 50
Nucleotide Length 150
Protein Sequence MERDRDTKRARDTESLRDTDRHRDGQRRRETETDRQRHRESERYRNSQRQ
Nucleotide Sequence ATGGAGAGAGACAGAGACACAAAGAGAGCCAGAGACACAGAGAGTCTGAGAGATACAGACAGACACAGAGACGGCCAGAGACGGAGAGAGACAGAGACAGACAGACAGAGACACAGAGAGTCTGAGAGATACAGAAACAGCCAGAGACAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab