CircRNA Information

General Information
circRNA Basic Information
CircID chr19:19624341|19624545
Strand +
CircType exon
Host Gene ENSG00000064547.12;
Algorism CIRI2;
Sequence CAGGCCAGGTGGTACTGCTCCTGGATGGTTTAGGCTGTGAGTCCTGCAATGTCCTGGCTGTAGAAAAGTACTTCCTACTGTTGGCCGAGGCCAACTCCCTGGTCAATGCTGCTGTGTACTCTTGCCGAGATGCTGAGATGCGCCGCACCTTCCGCCGCCTTCTCTGCTGCGCGTGCCTCCGCCAGTCCACCCGCGAGTCTGTCCA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr19:19624341|19624545 hsa-miR-15a-5p 0 0 1
chr19:19624341|19624545 hsa-miR-15a-3p 0 0 1
chr19:19624341|19624545 hsa-miR-18a-5p 0 0 1
chr19:19624341|19624545 hsa-miR-18a-3p 0 0 1
chr19:19624341|19624545 hsa-miR-31-5p 0 0 1
chr19:19624341|19624545 hsa-miR-31-3p 0 0 1
chr19:19624341|19624545 hsa-miR-107 0 0 1
chr19:19624341|19624545 hsa-miR-15b-5p 0 0 1
chr19:19624341|19624545 hsa-miR-15b-3p 0 0 1
chr19:19624341|19624545 hsa-miR-195-5p 0 0 1
chr19:19624341|19624545 hsa-miR-195-3p 0 0 1
chr19:19624341|19624545 hsa-miR-424-5p 0 0 1
chr19:19624341|19624545 hsa-miR-424-3p 0 0 1
chr19:19624341|19624545 hsa-miR-18b-5p 0 0 1
chr19:19624341|19624545 hsa-miR-18b-3p 0 0 1
chr19:19624341|19624545 hsa-miR-497-5p 0 0 1
chr19:19624341|19624545 hsa-miR-497-3p 0 0 1
chr19:19624341|19624545 hsa-miR-571 0 0 1
chr19:19624341|19624545 hsa-miR-650 1 0 1
chr19:19624341|19624545 hsa-miR-658 0 0 1
chr19:19624341|19624545 hsa-miR-675-5p 0 0 1
chr19:19624341|19624545 hsa-miR-675-3p 0 0 1
chr19:19624341|19624545 hsa-miR-665 0 0 1
chr19:19624341|19624545 hsa-miR-922 0 0 1
chr19:19624341|19624545 hsa-miR-1286 0 0 1
chr19:19624341|19624545 hsa-miR-1288-5p 0 0 1
chr19:19624341|19624545 hsa-miR-1288-3p 0 0 1
chr19:19624341|19624545 hsa-miR-1307-5p 0 0 1
chr19:19624341|19624545 hsa-miR-1307-3p 0 0 1
chr19:19624341|19624545 hsa-miR-139-5p 0 0 1
chr19:19624341|19624545 hsa-miR-103 0 0 1
chr19:19624341|19624545 hsa-miR-16 0 0 1
chr19:19624341|19624545 hsa-miR-1269 0 0 1
chr19:19624341|19624545 hsa-miR-886-3p 0 0 1
chr19:19624341|19624545 hsa-miR-663a 1 0 0
chr19:19624341|19624545 hsa-miR-762 1 0 0
chr19:19624341|19624545 hsa-miR-1293 1 0 0
chr19:19624341|19624545 hsa-miR-3185 1 0 0
chr19:19624341|19624545 hsa-miR-3197 1 0 0
chr19:19624341|19624545 hsa-miR-3665 1 0 0
chr19:19624341|19624545 hsa-miR-4440 1 0 0
chr19:19624341|19624545 hsa-miR-4467 1 0 0
chr19:19624341|19624545 hsa-miR-4479 1 0 0
chr19:19624341|19624545 hsa-miR-4492 1 0 0
chr19:19624341|19624545 hsa-miR-4498 1 0 0
chr19:19624341|19624545 hsa-miR-3960 1 0 0
chr19:19624341|19624545 hsa-miR-4674 1 0 0
chr19:19624341|19624545 hsa-miR-4741 1 0 0
chr19:19624341|19624545 hsa-miR-5090 1 0 0
chr19:19624341|19624545 hsa-miR-5787 1 0 0
chr19:19624341|19624545 hsa-miR-6125 1 0 0
chr19:19624341|19624545 hsa-miR-8072 1 0 0
chr19:19624341|19624545 hsa-miR-6765-5p 1 0 0
chr19:19624341|19624545 hsa-miR-6825-5p 1 0 0
chr19:19624341|19624545 hsa-miR-8071 1 0 0
chr19:19624341|19624545 hsa-miR-6089 1 0 0
chr19:19624341|19624545 hsa-miR-6880-5p 1 0 0
chr19:19624341|19624545 hsa-miR-7847-3p 1 0 0
chr19:19624341|19624545 hsa-miR-4695-5p 1 0 0
chr19:19624341|19624545 hsa-miR-6820-5p 1 0 0
chr19:19624341|19624545 hsa-miR-6748-5p 1 0 0
chr19:19624341|19624545 hsa-miR-6732-5p 1 0 0
chr19:19624341|19624545 hsa-miR-6753-5p 1 0 0
chr19:19624341|19624545 hsa-miR-885-3p 1 0 0
chr19:19624341|19624545 hsa-miR-1228-5p 1 0 0
chr19:19624341|19624545 hsa-miR-6771-5p 1 0 0
chr19:19624341|19624545 hsa-miR-3677-3p 1 0 0
chr19:19624341|19624545 hsa-miR-4787-5p 1 0 0
chr19:19624341|19624545 hsa-miR-4446-3p 1 0 0
chr19:19624341|19624545 hsa-miR-654-5p 1 0 0
chr19:19624341|19624545 hsa-miR-3124-5p 1 0 0
chr19:19624341|19624545 hsa-miR-10400-5p 1 0 0
chr19:19624341|19624545 hsa-miR-1233-5p 1 0 0
chr19:19624341|19624545 hsa-miR-4763-3p 1 0 0
chr19:19624341|19624545 hsa-miR-6769b-5p 1 0 0
chr19:19624341|19624545 hsa-miR-6778-5p 1 0 0
chr19:19624341|19624545 hsa-miR-6787-5p 1 0 0
chr19:19624341|19624545 hsa-miR-5001-5p 1 0 0
chr19:19624341|19624545 hsa-miR-6756-5p 1 0 0
chr19:19624341|19624545 hsa-miR-6803-5p 1 0 0
chr19:19624341|19624545 hsa-miR-6751-5p 1 0 0
chr19:19624341|19624545 hsa-miR-6797-5p 1 0 0
chr19:19624341|19624545 hsa-miR-3620-5p 1 0 0
chr19:19624341|19624545 hsa-miR-5196-5p 1 0 0
chr19:19624341|19624545 hsa-miR-328-5p 1 0 0
chr19:19624341|19624545 hsa-miR-4632-5p 1 0 0
chr19:19624341|19624545 hsa-miR-6795-5p 1 0 0
chr19:19624341|19624545 hsa-miR-6885-5p 1 0 0
chr19:19624341|19624545 hsa-miR-6856-5p 1 0 0
chr19:19624341|19624545 hsa-miR-3619-5p 1 0 0
chr19:19624341|19624545 hsa-miR-6715b-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr19:19624341|19624545
ORF Type ORF1
Protein Length 33
Nucleotide Length 99
Protein Sequence MLLCTLAEMLRCAAPSAAFSAARASASPPASLS
Nucleotide Sequence ATGCTGCTGTGTACTCTTGCCGAGATGCTGAGATGCGCCGCACCTTCCGCCGCCTTCTCTGCTGCGCGTGCCTCCGCCAGTCCACCCGCGAGTCTGTCC
CircID chr19:19624341|19624545
ORF Type ORF2
Protein Length 30
Nucleotide Length 93
Protein Sequence MQCPGCRKVLPTVGRGQLPGQCCCVLLPRC
Nucleotide Sequence CTGCAATGTCCTGGCTGTAGAAAAGTACTTCCTACTGTTGGCCGAGGCCAACTCCCTGGTCAATGCTGCTGTGTACTCTTGCCGAGATGCTGA
CircID chr19:19624341|19624545
ORF Type ORF3
Protein Length 63
Nucleotide Length 189
Protein Sequence MLLDGLGCESCNVLAVEKYFLLLAEANSLVNAAVYSCRDAEMRRTFRRLLCCACLRQSTRESV
Nucleotide Sequence CTGCTCCTGGATGGTTTAGGCTGTGAGTCCTGCAATGTCCTGGCTGTAGAAAAGTACTTCCTACTGTTGGCCGAGGCCAACTCCCTGGTCAATGCTGCTGTGTACTCTTGCCGAGATGCTGAGATGCGCCGCACCTTCCGCCGCCTTCTCTGCTGCGCGTGCCTCCGCCAGTCCACCCGCGAGTCTGTC
CircID chr19:19624341|19624545
ORF Type ORF4
Protein Length 35
Nucleotide Length 105
Protein Sequence MTRELASANSRKYFSTARTLQDSQPKPSRSSTTWP
Nucleotide Sequence TTGACCAGGGAGTTGGCCTCGGCCAACAGTAGGAAGTACTTTTCTACAGCCAGGACATTGCAGGACTCACAGCCTAAACCATCCAGGAGCAGTACCACCTGGCCT
CircID chr19:19624341|19624545
ORF Type ORF5
Protein Length 36
Nucleotide Length 111
Protein Sequence MAEARAAEKAAEGAAHLSISARVHSSIDQGVGLGQQ
Nucleotide Sequence CTGGCGGAGGCACGCGCAGCAGAGAAGGCGGCGGAAGGTGCGGCGCATCTCAGCATCTCGGCAAGAGTACACAGCAGCATTGACCAGGGAGTTGGCCTCGGCCAACAGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab